Detalhe da pesquisa
1.
Structure of an internal loop motif with three consecutive Uâ¢U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA.
Nucleic Acids Res
; 2024 May 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-38783391
2.
Structural and dynamic effects of pseudouridine modifications on noncanonical interactions in RNA.
RNA
; 29(6): 790-807, 2023 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-36868785
3.
Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations.
J Chem Inf Model
; 64(9): 3896-3911, 2024 May 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-38630447
4.
Spontaneous binding of single-stranded RNAs to RRM proteins visualized by unbiased atomistic simulations with a rescaled RNA force field.
Nucleic Acids Res
; 50(21): 12480-12496, 2022 11 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-36454011
5.
Complexity of Guanine Quadruplex Unfolding Pathways Revealed by Atomistic Pulling Simulations.
J Chem Inf Model
; 63(15): 4716-4731, 2023 08 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-37458574
6.
Atomistic Picture of Opening-Closing Dynamics of DNA Holliday Junction Obtained by Molecular Simulations.
J Chem Inf Model
; 63(9): 2794-2809, 2023 05 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-37126365
7.
MD simulations reveal the basis for dynamic assembly of Hfq-RNA complexes.
J Biol Chem
; 296: 100656, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-33857481
8.
Molecular basis for AU-rich element recognition and dimerization by the HuR C-terminal RRM.
Proc Natl Acad Sci U S A
; 116(8): 2935-2944, 2019 02 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-30718402
9.
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.
Chem Rev
; 118(8): 4177-4338, 2018 04 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-29297679
10.
An intricate balance of hydrogen bonding, ion atmosphere and dynamics facilitates a seamless uracil to cytosine substitution in the U-turn of the neomycin-sensing riboswitch.
Nucleic Acids Res
; 46(13): 6528-6543, 2018 07 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-29893898
11.
Mechanism of polypurine tract primer generation by HIV-1 reverse transcriptase.
J Biol Chem
; 293(1): 191-202, 2018 01 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29122886
12.
Molecular basis for the increased affinity of an RNA recognition motif with re-engineered specificity: A molecular dynamics and enhanced sampling simulations study.
PLoS Comput Biol
; 14(12): e1006642, 2018 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-30521520
13.
Structural study of the Fox-1 RRM protein hydration reveals a role for key water molecules in RRM-RNA recognition.
Nucleic Acids Res
; 45(13): 8046-8063, 2017 Jul 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-28505313
14.
Coordination between the polymerase and RNase H activity of HIV-1 reverse transcriptase.
Nucleic Acids Res
; 45(6): 3341-3352, 2017 04 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-28108662
15.
Synergy between NMR measurements and MD simulations of protein/RNA complexes: application to the RRMs, the most common RNA recognition motifs.
Nucleic Acids Res
; 44(13): 6452-70, 2016 07 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-27193998
16.
Extended molecular dynamics of a c-kit promoter quadruplex.
Nucleic Acids Res
; 43(18): 8673-93, 2015 Oct 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-26245347
17.
Molecular dynamic simulations of protein/RNA complexes: CRISPR/Csy4 endoribonuclease.
Biochim Biophys Acta
; 1850(5): 1072-1090, 2015 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-25450173
18.
Structural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations.
Nucleic Acids Res
; 41(14): 7128-43, 2013 Aug.
Artigo
em Inglês
| MEDLINE | ID: mdl-23700306
19.
Benchmark quantum-chemical calculations on a complete set of rotameric families of the DNA sugar-phosphate backbone and their comparison with modern density functional theory.
Phys Chem Chem Phys
; 15(19): 7295-310, 2013 May 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-23575975
20.
Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations.
J Chem Theory Comput
; 19(22): 8423-8433, 2023 Nov 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-37944118