Antimicrobial susceptibility of Viridians Group of Streptococci isolated from infective endocarditis patients from 2018 to 2023.

INTRODUCTION: Viridans Group of Streptococci (VGS) are heterogeneous alpha hemolytic Streptococci that form commensal flora in the oral cavity, upper respiratory tract, gastrointestinal tract and female genital tract and are potential pathogens that can cause serious infections like infective endocarditis and bacteremia. Penicillin or Ceftriaxone is the recommended first line agent for definitive therapy of VGS endocarditis. Alteration in penicillin binding proteins can decrease the susceptibility of VGS to penicillin and other beta-lactam agents and complicate antimicrobial therapy for serious VGS infections like Infective endocarditis. The aim of our study was to determine the antimicrobial susceptibility pattern of viridians group Streptococci isolated from blood samples of infective endocarditis patients from April 2018 to September 2023 against betalactam and other agents. MATERIAL AND METHODS: Three sets of blood cultures with 8-10 ml per bottle were collected from suspected infective endocarditis and incubated in automated blood culture system (BACTEC from BD diagnostics). The broth from positive bottles was streaked on Blood agar, Chocolate agar and MacConkey agar plates and incubated at 37°C. Alpha hemolytic Streptococci that grew after 24-48 h were further identified and antimicrobial susceptibility determined by Vitek 2 system. RESULTS: A total of 100 VGS was isolated from blood samples of Infective endocarditis patients. The species most commonly isolated in our study was S. sanguinis (25%) and S.mitis/oralis group (23%) followed by Non speciated Viridans Streptococci (17%). The lowest penicillin susceptibility ie. PEN MIC <0.12 µg/ml of 40% was observed in S. alactolyticus group, followed by S. mitis (52%) and S. gallolyticus (56%). S. mitis/oralis group showed the lowest susceptibilities to betalactam antibiotics among all speciated and non speciated VGS. CONCLUSION: Infective endocarditis carries a very high mortality and morbidity and the emergence of resistance to betalactam agents like penicillin will only narrow available therapeutic options and further challenge the treatment.

Transmission, characterization and occurrence of recombination in Indian strain of squash leaf curl China virus associated with yellow mosaic and leaf curl disease of Summer squash.

Summer squash is one of the important vegetable crops and its production is hampered by various abiotic and biotic stresses. Of the different biotic stresses, viral infections are responsible for causing great losses to this crop. Diseases caused by begomoviruses are becoming a major constraint in the cultivation of summer squash. Samples from summer squash plants exhibiting severe yellow mosaic and leaf curl symptoms were collected from the Varanasi district of Uttar Pradesh (India) and begomovirus associated with these plants was transmitted through whiteflies (Bemisia tabaci) to healthy squash plants. The relationship between causal virus and whitefly vector was determined. The minimum acquisition access period (AAP) and inoculation feeding period (IFP) required by B. tabaci to transmit the virus was determined to be 10 min and female insects have greater efficiency in transmitting virus than male insects. The partial genome of the virus was amplified by PCR (1.2 kb), cloned and sequenced from the ten infected plant samples collected from field. Partial genome sequence analysis (1.2 kb) obtained from the ten samples revealed that they are associated with begomovirus species closely related to the Indian strain of Squash leaf curl China virus (SLCCNV). Therefore, one representative sample (Sq-1) was selected and complete genome of the virus was amplified by rolling circle amplification (RCA) method. Sequence analysis by Sequence Demarcation Tool (SDT) showed that the current isolate has maximum nucleotide (nt) identity of 93.7-98.4% and 89-98.1% with respect to DNA A DNA B, respectively with Indian strains of SLCCNV infecting cucurbits in India. Recombination analysis of genomes (DNA A and DNA B components) showed that a major part of genomes likely to be originated from already known begomoviruses (ToLCNDV, SLCCNV-CN and SLCCNV-IN) are infecting cucurbitaceous crops. Serological assays such as triple antibody sandwich-enzyme-linked immune-sorbent (TAS-ELISA) assay, dot blot immunobinding assay (DIBA), immuno-capture polymerase chain reaction (IC-PCR) were developed for the detection of SLCCNV. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-021-02821-9.

In silico docking analysis revealed the potential of phytochemicals present in Phyllanthus amarus and Andrographis paniculata, used in Ayurveda medicine in inhibiting SARS-CoV-2.

The Severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) has resulted in outbreak of global pandemic, fatal pneumonia in human referred as Coronavirus Disease-2019 (Covid-19). Ayurveda, the age old practice of treating human ailments in India, can be considered against SARS-CoV-2. Attempt was made to provide preliminary evidences for interaction of 35 phytochemicals from two plants (Phyllanthus amarus and Andrographis paniculata used in Ayurveda) with SARS-CoV-2 proteins (open & closed state S protein, 3CLpro, PLpro and RdRp) through in silico docking analysis. The nucleotide analogue remdesivir, being used in treatment of SARS-CoV-2, was used as a positive control. The results revealed that 18 phytochemicals from P. amarus and 14 phytochemicals from A. paniculata shown binding energy affinity/dock score < - 6.0 kcal/mol, which is considered as minimum threshold for any compound to be used for drug development. Phytochemicals used for docking studies in the current study from P. amarus and A. paniculata showed binding affinity up to - 9.10 kcal/mol and - 10.60 kcal/mol, respectively. There was no significant difference in the binding affinities of these compounds with closed and open state S protein. Further, flavonoids (astragalin, kaempferol, quercetin, quercetin-3-O-glucoside and quercetin) and tannins (corilagin, furosin and geraniin) present in P. amarus have shown more binding affinity (up to - 10.60 kcal/mol) than remdesivir (up to - 9.50 kcal/mol). The pharmacokinetic predictions suggest that compounds from the two plants species studied in the current study are found to be non-carcinogenic, water soluble and biologically safe. The phytochemicals present in the extracts of P. amarus and A. paniculata might have synergistic effect with action on multiple target sites of SARS-CoV-2. The information generated here might serve as preliminary evidence for anti SARS-CoV-2 activity of phytochemicals present from P. amarus and A. paniculata and the potential of Ayurveda medicine in combating the virus. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s13205-020-02578-7.

Environmental effects of ozone depletion and its interactions with climate change: progress report, 2009.

The parties to the Montreal Protocol are informed by three panels of experts. One of these is the Environmental Effects Assessment Panel (EEAP), which deals with UV radiation and its effects on human health, animals, plants, biogeochemistry, air quality and materials. Since 2000, the analyses and interpretation of these effects have included interactions between UV radiation and global climate change. When considering the effects of climate change, it has become clear that processes resulting in changes in stratospheric ozone are more complex than believed previously. As a result of this, human health and environmental problems will likely be longer-lasting and more regionally variable. Like the other panels, the EEAP produces a detailed report every four years; the most recent was that for 2006 (Photochem. Photobiol. Sci., 2007, 6, 201-332). In the years in between, the EEAP produces a less detailed and shorter progress report, as is the case for this present one for 2009. A full quadrennial report will follow for 2010.

Minimally invasive spinal fusion and decompression for thoracolumbar spondylodiscitis.

OBJECTIVE: The objective was to study the results of the treatment of thoracolumbar spondylodiscitis (SD) through minimally invasive fusion and decompression technique. MATERIALS AND METHODS: All the patients were evaluated clinically and radiologically (X-ray, magnetic resonance imaging, and computed tomography scan) along with necessary laboratory investigations. They underwent the minimally invasive spinal (MIS) decompression and fusion procedure using tubular retractor system and percutaneous transpedicular fixation done under fluoroscopy guidance. They were assessed using pre- and postoperative Visual Analog Scale (VAS), Oswestry Disability Index (ODI), and Kirkaldy-Willis functional outcome criteria. Postoperative radiological assessment of fusion was done. Operating time and fluoroscopy duration were also studied. RESULTS: There were a total of 12 patients, with an equal sex ratio of 1:1 with 8 and 4 patients having the involvement of the lumbar and dorsal spine, respectively. The fixation was done in the involved vertebrae in 8 patients and adjacent normal vertebrae in 4 patients. There was an improvement in VAS score from 7.8 to 2.1 and ODI from 64.3 to 16.4. 4 patients had excellent, 7 had good, and 1 had fair outcome in Kirkaldy-Willis functional outcome criteria. There was Grade 2 and 3 fusion in 4 cases each, and 2 patients had Grade 4 fusion. The laboratory studies were found positive for tuberculosis in 3 cases with 7 having necrotizing granulomatous inflammation, and 2 patients had negative results. CONCLUSION: The MIS procedure is a safe and effective method of the management of SD in the thoracolumbar spine.

Tungsten-induced inactivation of molybdoenzymes in Anabaena.

The effect of tungsten on growth and activity of two molybdoenzymes has been studied in a nitrogen-fixing heterocystous cyanobacterium, Anabaena. Sodium tungstate inhibited growth and inactivated nitrogenase and nitrate reductase. The activity of both enzymes was restored by the addition of molybdenum. Tungstate treatment caused increase in heterocyst frequency both in NO3- medium and in medium free of combined nitrogen. These results suggest that tungstate treatment inactivates the molybdoenzymes in this cyanobacterium.

Differential effect of ultraviolet-B radiation on certain metabolic processes in a chromatically adapting Nostoc.

The impact of UV-B radiation on growth, pigmentation and certain physiological processes has been studied in a N2-fixing chromatically adapting cyanobacterium, Nostoc spongiaeforme. A brownish form (phycoerythrin rich) was found to be more tolerant to UV-B than the blue-green (phycocyanin rich) form of N. spongiaeforme. Continuous exposure to UV-B (5.5 W m-2) for 90 min caused complete killing of the blue-green strain whereas the brown strain showed complete loss of survival after 180 min. Pigment content was more strongly inhibited in the blue-green strain than in the brown. Nitrogenase activity was completely abolished in both strains within 35 min of UV-B treatment. Restoration of nitrogenase occurred upon transfer to fluorescent or incandescent light after a lag of 5-6 h, suggesting fresh synthesis of nitrogenase. Unlike the above processes, in vivo nitrate reductase activity was stimulated by UV-B treatment, the degree of enhancement being significantly higher in the blue-green strain. Like the effect of UV-B on nitrogenase, 14CO2 uptake was also completely abolished by UV-B treatment in both strains. Our findings suggest that UV-B may produce a deleterious effect on several metabolic activities of cyanobacteria, especially in cells lacking phycoerythrin. Strains containing phycoerythrin appear to be more tolerant to UV-B, probably because of their inherent property of adapting to a variety of light qualities.

Mutagenesis by ethidium bromide, proflavine and mitomycin C in the cyanobacterium Nostoc sp.

Ethidium bromide, proflavine, and mitomycin C were strongly lethal but weakly mutagenic to the cyanobacterium Nostoc sp. With a view to studying the mode of action of these weak mutagens, their binding to Nostoc DNA was studied. The spectral changes resulting from the binding of these mutagens to the DNA in vitro indicated that probably only electrostatic forces may be involved in the mutagen-DNA binding. A similar low level of DNA binding in vivo would explain the weakly mutagenic action of the dyes observed. Since the dyes do not effectively intercalate into DNA, they may not be effective in inducing frameshift mutations but still can interfere with replication and/or transcription of the DNA.

Environmental effects of ozone depletion and its interactions with climate change: progress report, 2008.

After the enthusiastic celebration of the 20th Anniversary of the Montreal Protocol on Substances that Deplete the Ozone Layer in 2007, the work for the protection of the ozone layer continues. The Environmental Effects Assessment Panel is one of the three expert panels within the Montreal Protocol. This EEAP deals with the increase of the UV irradiance on the Earth's surface and its effects on human health, animals, plants, biogeochemistry, air quality and materials. For the past few years, interactions of ozone depletion with climate change have also been considered. It has become clear that the environmental problems will be long-lasting. In spite of the fact that the worldwide production of ozone depleting chemicals has already been reduced by 95%, the environmental disturbances are expected to persist for about the next half a century, even if the protective work is actively continued, and completed. The latest full report was published in Photochem. Photobiol. Sci., 2007, 6, 201-332, and the last progress report in Photochem. Photobiol. Sci., 2008, 7, 15-27. The next full report on environmental effects is scheduled for the year 2010. The present progress report 2008 is one of the short interim reports, appearing annually.

Effects of solar UV radiation on aquatic ecosystems and interactions with climate change.

Recent results continue to show the general consensus that ozone-related increases in UV-B radiation can negatively influence many aquatic species and aquatic ecosystems (e.g., lakes, rivers, marshes, oceans). Solar UV radiation penetrates to ecological significant depths in aquatic systems and can affect both marine and freshwater systems from major biomass producers (phytoplankton) to consumers (e.g., zooplankton, fish, etc.) higher in the food web. Many factors influence the depth of penetration of radiation into natural waters including dissolved organic compounds whose concentration and chemical composition are likely to be influenced by future climate and UV radiation variability. There is also considerable evidence that aquatic species utilize many mechanisms for photoprotection against excessive radiation. Often, these protective mechanisms pose conflicting selection pressures on species making UV radiation an additional stressor on the organism. It is at the ecosystem level where assessments of anthropogenic climate change and UV-related effects are interrelated and where much recent research has been directed. Several studies suggest that the influence of UV-B at the ecosystem level may be more pronounced on community and trophic level structure, and hence on subsequent biogeochemical cycles, than on biomass levels per se.

Environmental effects of ozone depletion and its interactions with climate change: progress report, 2004.

The complexity of the linkages between ozone depletion, UV-B radiation and climate change has become more apparent.

Pyruvate-induced stimulation of nitrogenase activity in Aulosira fertilissima.

The effect of pyruvate on nitrogenase activity in the N2-fixing cyanobacterium Aulosira fertilissima has been studied. Addition of 0.01-1.0 mM concentrations of pyruvate to actively N2-fixing cultures stimulated the enzyme activity in light; the maximum stimulation was observed with 0.3 mM pyruvate. There was no detectable stimulation of nitrogenase activity in the dark. Addition of pyruvate had no effect on the growth rate. DCMU gradually inhibited nitrogenase activity, but supplementation of 0.3 mM pyruvate to such cultures restored normal activity. Furthermore, pyruvate-induced stimulation of nitrogenase activity was found to be stimulated by anaerobic conditions. The inactivation of nitrogenase activity by the addition of O2 was restored by pyruvate. From 14CO2 uptake studies it appears that the alga preferred to take up pyruvate even in the presence of 14CO2. Thus it appears that pyruvate is taken up and metabolized by the alga, which manifests the observed effects.

Lipid and hydrocarbon production byBotryococcus spp. under nitrogen limitation and anaerobiosis.

The production of lipids and hydrocarbons in batch cultures of the algaeBotryococcus braunii andB. protuberans has been studied with respect to nitrogen limitation under aerobic and anaerobic conditions. Nitrogen deficiency significantly decreased the dry weight, chlorophylla and protein contents but the amounts of carotenoids, carbohydrates and lipids increased in both the species. Nitrogen starvation gave a 1.6-fold increase in lipid content. Anaerobiosis under nitrogen deficient conditions gave greater lipid production than anaerobiosis in nitrogen supplemented medium. Under nitrogen deficiency, the hydrocarbon fraction increased and the polar lipids decreased. Anaerobiosis induced hydrocarbon synthesis more significantly than nitrogen deficiency but decreased other non-polar and polar lipids.

Effect of light quality, anaerobiosis and glucose on nitrogen-fixation by the rice field cyanobacterium Aulosira fertilissima Ghose.

Anaerobiosis enhanced the nitrogenase activity of the rice field alga Aulosira fertilissima both in light and dark. The activity was maximum in white light, lesser in red, blue and green light and least in the dark. Glucose stimulated the activity both in light and dark.

Adaptation of a strain of Spirulina platensis to grow in cobalt- and iodine-enriched media.

Cobalt- and iodide-enriched (adapted, tolerant) strains of the protein-rich cyanobacterium, Spirulina platensis, were produced by repeated sub-culturing in increasing concentrations of the two trace elements. The strains enriched with cobalt and iodide showed higher uptake of these elements than the controls. The LD50 values for the parent and cobalt-adapted strains were 95 and 231 mumol l-1 CO2+, respectively. Likewise, the LD50 values for parent and iodide-adapted strains were 12 and 42 mmol l-1 I-. The carotenoid:chlorophyll a ratio of the parent strains increased after cobalt addition. The cobalt-adapted strain showed a much higher ratio than the cobalt-grown parent (sensitive) cells which remained unchanged after cobalt addition. Intracellular CO2+ uptake by the cells was concentration-dependent and followed Michaelis-Menten kinetics with saturation in uptake occurring in the parent and adapted strains at 126 and 189 mumol l-1 Co2+, respectively. At saturating concentrations, the maximum CO2+ uptake was 39.73 and 158.43 nmol CO2+ mg-1 protein, respectively for the parent and adapted strains. The adapted strain also showed greater cobalt adsorption. The Km of intracellular CO2+ uptake was lower in the case of adapted cells as compared with the parent, whereas Vmax showed an opposite trend. Thus, the adapted cells appear to be more efficient than the parent strain in intracellular uptake of cobalt. Differences between kinetic constants of both the strains suggest that the strains may be physiologically different. Likewise, iodide uptake was significantly higher in iodide-adapted cells than in controls.

Variability of nitrogen fixation in some isolates of Nostoc linckia.

Four clonal isolates of Nostoc linckia isolated from different localities were compared with respect to growth, nitrogen content (cellular and extracellular), and pigment composition. A considerable range of variation was observed among these isolates. This indicates the existence of genetically distinct clonal populations of the alga in natural habitats.

Some characteristics of two morphological mutants of Nostoc linckia induced by nitrosoguanidine.

The blue-green alga Nostoc linckia was treated with nitrosoguanidine and two classes of morphological mutant clones were isolated. One class shows certain abnormal phenotypic features of vegetative cells, spores, and heterocysts. It has increased heterocyst frequency and impaired growth rate. The other class exhibits an altered heterocyst spacing pattern. Both classes of mutants have reduced nitrogenase activity.

Differential effects of amino acid analogs on growth and heterocyst differentiation in two nitrogen-fixing blue-green algae.

Effects of a few amino acid analogs on growth and heterocyst differentiation have been studied in two nitrogen-fixing species ofAnabaena. All the analogs except α-methyl-DL-aspartic acid inhibited growth. Exposure ofAnabaena doliolum, toDL-5-fluorotryptophan andDL-p-fluorophenylalanine caused pronounced fragmentation of filaments into single cells. At low concentrations (0.01 mM), α-methyl-DL-aspartic acid stimulated growth of the strain ofA. doliolum as well as the strain of the second (unidentified)Anabaena species. Ethionine,DL-p-fluorophenylalanine,DL-5-fluorotryptophan, and canavanine blocked heterocyst differentiation, whereas α-methyl-DL-aspartic acid, α-methyl-DL-methionine,N-o-nitrophenylsulfenyl-L-tryptophan, norleucine, andS-2-aminoethyl-L-cysteine did not show any significant effect. Treatment with 7-azatryptophan,DL-ß-hydroxynorvaline,L-methionine-DL-sulfoximine,L-methionine sulfone, and ß-2-thienyl-DL-alanine led to a twofold increase in heterocyst frequency. Possible modes of action of the analogs in growth inhibition and changes in heterocyst frequency are discussed.

Response of a wild type and a non-nitrogen-fixing mutant of Anabaena doliolum towards different amino acids.

The effects of various amino acids on growth and heterocyst differentiation have been studied on wild type and a heterocystous, non-nitrogen-fixing (het+ nif-) mutant of Anabaena doliolum. Glutamine, arginine and asparagine showed maximum stimulation of growth. Serine, proline and alanine elicited slight stimulation of growth of wild type but failed to show any stimulatory effect on mutant strain. Valine, glutamic acid, iso-leucine and leucine at a concentration of as low as 0.1 mM were inhibitory to growth of parent type. Methionine, aspartic acid, threonine, cysteine, and tryptophan did not affect growth at concentrations lower than 0.5 mM. But at 1 mM, these amino acids were inhibitory. In addition to the stimulatory effects of glutamine, arginine and asparagine, the heterocyst frequency was also repressed by these amino acids. Glutamine and arginine at 2 mM completely repressed heterocyst differentiation in the mutant strain; however, other amino acids failed to repress the differentiation of heterocysts. Our results suggest that glutamine and arginine are utilized as nitrogen sources. This is strongly supported from the data of growth and heterocyst differentiation of mutant strain, where at least with glutamine there is good growth without heterocyst formation. Studies with glutamine and arginine on other N2-fixing blue-green algae may reveal the regulation of the heterocyst-nitrogenase sub-system.