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1.
Proc Natl Acad Sci U S A ; 120(38): e2220283120, 2023 09 19.
Artigo em Inglês | MEDLINE | ID: mdl-37695904

RESUMO

Research in both ecology and AI strives for predictive understanding of complex systems, where nonlinearities arise from multidimensional interactions and feedbacks across multiple scales. After a century of independent, asynchronous advances in computational and ecological research, we foresee a critical need for intentional synergy to meet current societal challenges against the backdrop of global change. These challenges include understanding the unpredictability of systems-level phenomena and resilience dynamics on a rapidly changing planet. Here, we spotlight both the promise and the urgency of a convergence research paradigm between ecology and AI. Ecological systems are a challenge to fully and holistically model, even using the most prominent AI technique today: deep neural networks. Moreover, ecological systems have emergent and resilient behaviors that may inspire new, robust AI architectures and methodologies. We share examples of how challenges in ecological systems modeling would benefit from advances in AI techniques that are themselves inspired by the systems they seek to model. Both fields have inspired each other, albeit indirectly, in an evolution toward this convergence. We emphasize the need for more purposeful synergy to accelerate the understanding of ecological resilience whilst building the resilience currently lacking in modern AI systems, which have been shown to fail at times because of poor generalization in different contexts. Persistent epistemic barriers would benefit from attention in both disciplines. The implications of a successful convergence go beyond advancing ecological disciplines or achieving an artificial general intelligence-they are critical for both persisting and thriving in an uncertain future.


Assuntos
Inteligência Artificial , Lepidópteros , Animais , Ecossistema , Generalização Psicológica , Redes Neurais de Computação
2.
Proc Natl Acad Sci U S A ; 120(52): e2301055120, 2023 Dec 26.
Artigo em Inglês | MEDLINE | ID: mdl-38109531

RESUMO

Predicting how the range dynamics of migratory species will respond to climate change requires a mechanistic understanding of the factors that operate across the annual cycle to control the distribution and abundance of a species. Here, we use multiple lines of evidence to reveal that environmental conditions during the nonbreeding season influence range dynamics across the life cycle of a migratory songbird, the American redstart (Setophaga ruticilla). Using long-term data from the nonbreeding grounds and breeding origins estimated from stable hydrogen isotopes in tail feathers, we found that the relationship between annual survival and migration distance is mediated by precipitation, but only during dry years. A long-term drying trend throughout the Caribbean is associated with higher mortality for individuals from the northern portion of the species' breeding range, resulting in an approximate 500 km southward shift in breeding origins of this Jamaican population over the past 30 y. This shift in connectivity is mirrored by changes in the redstart's breeding distribution and abundance. These results demonstrate that the climatic effects on demographic processes originating during the tropical nonbreeding season are actively shaping range dynamics in a migratory bird.


Assuntos
Passeriformes , Aves Canoras , Animais , Migração Animal , Região do Caribe , Dinâmica Populacional , Estações do Ano
3.
J Environ Manage ; 334: 117415, 2023 May 15.
Artigo em Inglês | MEDLINE | ID: mdl-36780814

RESUMO

Much remains unknown about variation in pathogen transmission across the geographic range of a free-ranging fish or animal species and about the influence of movement (associated with husbandry practices or animal behavior) on pathogen transmission. Salmonid hatcheries are an ideal system in which to study these processes. Salmonid hatcheries are managed for endangered species recovery, supplementation of threatened or at-risk fish stocks, support of fisheries, and ecosystem stability. Infectious hematopoietic necrosis virus (IHNV) is a rhabdovirus of significant concern to salmon aquaculture. Landscape IHNV transmission dynamics previously had been estimated only for salmonid hatcheries in the Lower Columbia River Basin (LCRB). The objectives of this study were to estimate IHNV transmission dynamics in a unique geographic region, the Snake River Basin (SRB), and to quantitatively estimate the effect of model coproduction on inference because previous assessments of coproduction have been qualitative. In contrast to the LCRB, the SRB has hatchery complexes consisting of a main hatchery and ≥1 satellite facility. Knowledge about hatchery complexes was held by a subset of project researchers but would not have been available to project modelers without coproduction. Project modelers generated and tested multiple versions of Bayesian susceptible-exposedinfected models to realistically represent the SRB and estimate the effect of coproduction. Models estimated the frequency of transmission routes, route-specific infection probabilities, and infection probabilities for combinations of salmonid hosts and IHNV lineages. Model results indicated that in the SRB, avoiding exposure to IHNV-positive adult salmonids is the most important action to prevent juvenile infections. Migrating adult salmonids exposed juvenile cohort-sites most frequently, and the infection probability was greatest following exposure to migrating adults. Without coproduction, the frequency of exposure by migrating adults would have been overestimated by 70 cohort-sites, and the infection probability following exposure to migrating adults would have been underestimated by∼0.09. The coproduced model had less uncertainty in the infection probability if no transmission route could be identified (Bayesian credible interval (BCI) width = 0.12) compared to the model without coproduction (BCI width = 0.34). Evidence for virus lineage MD specialization on steelhead and rainbow trout (both Oncorhynchus mykiss) was apparent without model coproduction. In the SRB, we found a greater probability of virus lineage UC infection in Chinook salmon (Oncorhynchus tshawytscha) compared to in O. mykiss, whereas in the LCRB, UC more clearly exhibited a generalist approach. Coproduction influenced estimates that depended on transmission routes, which operated differently at main hatcheries and satellite sites within hatchery complexes. Hatchery complexes are found outside of the SRB and are not specific to salmonid hatcheries alone. There is great potential for coproduction and modeling spatial contact networks to advance understanding about infectious disease transmission in complex production systems and surrounding free-ranging animal populations.


Assuntos
Doenças dos Peixes , Vírus da Necrose Hematopoética Infecciosa , Salmonidae , Animais , Rios , Ecossistema , Teorema de Bayes , Salmão
4.
Ecol Appl ; 32(5): e2590, 2022 07.
Artigo em Inglês | MEDLINE | ID: mdl-35343013

RESUMO

Near-term ecological forecasts provide resource managers advance notice of changes in ecosystem services, such as fisheries stocks, timber yields, or water quality. Importantly, ecological forecasts can identify where there is uncertainty in the forecasting system, which is necessary to improve forecast skill and guide interpretation of forecast results. Uncertainty partitioning identifies the relative contributions to total forecast variance introduced by different sources, including specification of the model structure, errors in driver data, and estimation of current states (initial conditions). Uncertainty partitioning could be particularly useful in improving forecasts of highly variable cyanobacterial densities, which are difficult to predict and present a persistent challenge for lake managers. As cyanobacteria can produce toxic and unsightly surface scums, advance warning when cyanobacterial densities are increasing could help managers mitigate water quality issues. Here, we fit 13 Bayesian state-space models to evaluate different hypotheses about cyanobacterial densities in a low nutrient lake that experiences sporadic surface scums of the toxin-producing cyanobacterium, Gloeotrichia echinulata. We used data from several summers of weekly cyanobacteria samples to identify dominant sources of uncertainty for near-term (1- to 4-week) forecasts of G. echinulata densities. Water temperature was an important predictor of cyanobacterial densities during model fitting and at the 4-week forecast horizon. However, no physical covariates improved model performance over a simple model including the previous week's densities in 1-week-ahead forecasts. Even the best fit models exhibited large variance in forecasted cyanobacterial densities and did not capture rare peak occurrences, indicating that significant explanatory variables when fitting models to historical data are not always effective for forecasting. Uncertainty partitioning revealed that model process specification and initial conditions dominated forecast uncertainty. These findings indicate that long-term studies of different cyanobacterial life stages and movement in the water column as well as measurements of drivers relevant to different life stages could improve model process representation of cyanobacteria abundance. In addition, improved observation protocols could better define initial conditions and reduce spatial misalignment of environmental data and cyanobacteria observations. Our results emphasize the importance of ecological forecasting principles and uncertainty partitioning to refine and understand predictive capacity across ecosystems.


Assuntos
Cianobactérias , Lagos , Teorema de Bayes , Ecossistema , Eutrofização , Incerteza
5.
Mol Ecol ; 30(9): 1943-1945, 2021 05.
Artigo em Inglês | MEDLINE | ID: mdl-33587763

RESUMO

Leptospirosis is a disease that disproportionately affects impoverished urban communities, but is likely to become more prevalent as changing climate alters flooding regimes. The persistence and transmission of the Leptospira pathogen is reliant on small vertebrate animals, predominantly rodents. In this issue of Molecular Ecology, Peterson et al. demonstrate how changes in rodent diversity and abundances across the complex mosaic of abandonment and recovery investment in post-Katrina New Orleans can predict zoonotic infection prevalence. Understanding the ecological conditions that support persistence and transmission of zoonotic pathogens in urban ecosystems, where they are most likely to affect humans, is critical to effective monitoring and prevention.


Assuntos
Leptospira , Leptospirose , Animais , Ecossistema , Nova Orleans , Roedores
6.
Bioscience ; 70(4): 297-314, 2020 Apr 01.
Artigo em Inglês | MEDLINE | ID: mdl-32284630

RESUMO

The Earth's population will become more than 80% urban during this century. This threshold is often regarded as sufficient justification for pursuing urban ecology. However, pursuit has primarily focused on building empirical richness, and urban ecology theory is rarely discussed. The Baltimore Ecosystem Study (BES) has been grounded in theory since its inception and its two decades of data collection have stimulated progress toward comprehensive urban theory. Emerging urban ecology theory integrates biology, physical sciences, social sciences, and urban design, probes interdisciplinary frontiers while being founded on textbook disciplinary theories, and accommodates surprising empirical results. Theoretical growth in urban ecology has relied on refined frameworks, increased disciplinary scope, and longevity of interdisciplinary interactions. We describe the theories used by BES initially, and trace ongoing theoretical development that increasingly reflects the hybrid biological-physical-social nature of the Baltimore ecosystem. The specific mix of theories used in Baltimore likely will require modification when applied to other urban areas, but the developmental process, and the key results, will continue to benefit other urban social-ecological research projects.

7.
Ecology ; 98(1): 283, 2017 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-28052389

RESUMO

Surveillance records of the acute RNA pathogen of Pacific salmonid fish infectious hematopoietic necrosis virus are combined for the first time to enable landscape-level ecological analyses and modeling. The study area is the freshwater ecosystems of the large Columbia River watershed in the U.S. states of Washington, Oregon, and Idaho, as well as coastal rivers in Washington and Oregon. The study period is 2000-2012, and records were contributed by all five resource management agencies that operate conservation hatcheries in the study area. Additional records from wild fish were collected from the National Wild Fish Health Survey, operated by the U.S. Fish and Wildlife Survey. After curation and normalization, the data set consists of 6766 records, representing 1146 sample sites and 15 different fish hosts. The virus was found in an average of 12.4% of records, and of these 66.2% also have viral genetic analysis available. This data set is used to conduct univariate ecological and epidemiological analyses and develop a novel hierarchical landscape transmission model for an aquatic pathogen.


Assuntos
Doenças dos Peixes/epidemiologia , Vírus da Necrose Hematopoética Infecciosa/genética , Infecções por Rhabdoviridae/epidemiologia , Animais , Oregon , Filogenia , Washington
8.
J Am Mosq Control Assoc ; 33(3): 241-245, 2017 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-28854108

RESUMO

In this paper, we share our findings from a 2-year citizen science program called Mosquito Stoppers. This pest-oriented citizen science project is part of a larger coupled natural-human systems project seeking to understand the fundamental drivers of mosquito population density and spatial variability in potential exposure to mosquito-borne pathogens in a matrix of human construction, urban renewal, and individual behaviors. Focusing on residents in West Baltimore, participants were recruited through neighborhood workshops and festivals. Citizen scientists participated in yard surveys of potential mosquito habitat and in evaluating mosquito nuisance. We found that citizen scientists, with minimal education and training, were able to accurately collect data that reflect trends found in a comparable researcher-generated database.


Assuntos
Participação da Comunidade , Coleta de Dados/métodos , Controle de Mosquitos/métodos , Baltimore
9.
Ecol Appl ; 26(5): 1437-1455, 2016 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-27755760

RESUMO

We review and synthesize information on invasions of nonnative forest insects and diseases in the United States, including their ecological and economic impacts, pathways of arrival, distribution within the United States, and policy options for reducing future invasions. Nonnative insects have accumulated in United States forests at a rate of ~2.5 per yr over the last 150 yr. Currently the two major pathways of introduction are importation of live plants and wood packing material such as pallets and crates. Introduced insects and diseases occur in forests and cities throughout the United States, and the problem is particularly severe in the Northeast and Upper Midwest. Nonnative forest pests are the only disturbance agent that has effectively eliminated entire tree species or genera from United States forests within decades. The resulting shift in forest structure and species composition alters ecosystem functions such as productivity, nutrient cycling, and wildlife habitat. In urban and suburban areas, loss of trees from streets, yards, and parks affects aesthetics, property values, shading, stormwater runoff, and human health. The economic damage from nonnative pests is not yet fully known, but is likely in the billions of dollars per year, with the majority of this economic burden borne by municipalities and residential property owners. Current policies for preventing introductions are having positive effects but are insufficient to reduce the influx of pests in the face of burgeoning global trade. Options are available to strengthen the defenses against pest arrival and establishment, including measures taken in the exporting country prior to shipment, measures to ensure clean shipments of plants and wood products, inspections at ports of entry, and post-entry measures such as quarantines, surveillance, and eradication programs. Improved data collection procedures for inspections, greater data accessibility, and better reporting would support better evaluation of policy effectiveness. Lack of additional action places the nation, local municipalities, and property owners at high risk of further damaging and costly invasions. Adopting stronger policies to reduce establishments of new forest insects and diseases would shift the major costs of control to the source and alleviate the economic burden now borne by homeowners and municipalities.


Assuntos
Florestas , Insetos/classificação , Espécies Introduzidas , Animais , Monitoramento Ambiental , Estados Unidos
10.
Conserv Biol ; 30(3): 487-95, 2016 06.
Artigo em Inglês | MEDLINE | ID: mdl-26585836

RESUMO

Citizen science has generated a growing interest among scientists and community groups, and citizen science programs have been created specifically for conservation. We examined collaborative science, a highly interactive form of citizen science, which we developed within a theoretically informed framework. In this essay, we focused on 2 aspects of our framework: social learning and adaptive management. Social learning, in contrast to individual-based learning, stresses collaborative and generative insight making and is well-suited for adaptive management. Adaptive-management integrates feedback loops that are informed by what is learned and is guided by iterative decision making. Participants engaged in citizen science are able to add to what they are learning through primary data collection, which can result in the real-time information that is often necessary for conservation. Our work is particularly timely because research publications consistently report a lack of established frameworks and evaluation plans to address the extent of conservation outcomes in citizen science. To illustrate how our framework supports conservation through citizen science, we examined how 2 programs enacted our collaborative science framework. Further, we inspected preliminary conservation outcomes of our case-study programs. These programs, despite their recent implementation, are demonstrating promise with regard to positive conservation outcomes. To date, they are independently earning funds to support research, earning buy-in from local partners to engage in experimentation, and, in the absence of leading scientists, are collecting data to test ideas. We argue that this success is due to citizen scientists being organized around local issues and engaging in iterative, collaborative, and adaptive learning.


Assuntos
Participação da Comunidade , Conservação dos Recursos Naturais , Tomada de Decisões , Aprendizagem , Humanos , Pesquisa
11.
Ecology ; 95(5): 1360-9, 2014 May.
Artigo em Inglês | MEDLINE | ID: mdl-25000767

RESUMO

Many animal species can carry considerable burdens of ectoparasites: parasites living on the outside of a host's body. Ectoparasite infestation can decrease host survival, but the magnitude and even direction of survival effects can vary depending on the type of ectoparasite and the nature and duration of the association. When ectoparasites also serve as vectors of pathogens, the effects of ectoparasite infestation on host survival have the potential to alter disease dynamics by regulating host populations and stabilizing transmission. We quantified the impact of larval Ixodes scapularis tick burdens on both within-season and overwinter survival of white-footed mice (Peromyscus leucopus) using a hierarchical Bayesian capture-mark-recapture model. I. scapularis and P. leucopus are, respectively, vectors and competent reservoirs for the causative agents of Lyme disease, anaplasmosis, and babesiosis. Using a data set of 5587 individual mouse capture histories over sixteen years, we found little evidence for any effect of tick burdens on either within-season or overwinter mouse survival probabilities. In male mice, tick burdens were positively correlated with within-season survival probabilities. Mean maximum tick burdens were also positively correlated with population rates of change during the concurrent breeding season. The apparent indifference of mice to high tick burdens may contribute to their effectiveness as reservoir hosts for several human zoonotic pathogens.


Assuntos
Peromyscus/parasitologia , Infestações por Carrapato/veterinária , Carrapatos/fisiologia , Animais , Feminino , Interações Hospedeiro-Parasita , Larva/fisiologia , Masculino , Modelos Biológicos , Modelos Estatísticos , Análise de Sobrevida , Infestações por Carrapato/parasitologia
12.
J Med Entomol ; 50(4): 764-72, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23926774

RESUMO

Mosquito populations are largely regulated by processes occurring at the larval stage. We sampled mosquito larval microhabitats (mostly water-holding containers) in six neighborhoods in the Washington, DC, area that varied in socioeconomic status (SES) and housing structure (row houses vs. stand-alone houses) to test associations among these neighborhood characteristics, microhabitat abundance and parameters, and mosquito occurrence and densities. Thirty-four percent (33.9%) of sampled microhabitats contained mosquito larvae, and 93.1% of larvae were Aedes albopictus Skuse or Culex pipiens L. Five specific container types (drains, corrugated flexible drainpipes, planters, garbage cans, and buckets) accounted for the majority of water-holding (56.0%) and mosquito-positive (50.6%) microhabitats sampled. We found no associations between SES or housing structure with total microhabitat abundance per yard, mosquito occurrence or mosquito densities per microhabitat. In contrast, container purpose varied with SES, with low SES neighborhoods having greater numbers of disused containers and lower numbers of functional containers than low and medium SES neighborhoods. Ae. albopictus were 83% more abundant in disused containers, whereas Cx. pipiens were more abundant in structural and functional containers, possibly owing to species-specific oviposition and development related to water quality. Ae. albopictus densities increased over the summer, whereas Cx. pipiens densities remained constant. Ae. albopictus is usually the dominant pest in urban areas in the eastern United States; therefore, integrated mosquito management programs should incorporate the elimination of disused containers to reduce its infestation and adult production, especially in low SES neighborhoods where they occur most frequently.


Assuntos
Distribuição Animal , Culicidae/fisiologia , Ecossistema , Características de Residência , Animais , District of Columbia , Humanos , Larva/fisiologia , Classe Social
13.
Nature ; 447(7145): 710-3, 2007 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-17507930

RESUMO

Emerging infectious diseases present a formidable challenge to the conservation of native species in the twenty-first century. Diseases caused by introduced pathogens have had large impacts on species abundances, including the American chestnut, Hawaiian bird species and many amphibians. Changes in host population sizes can lead to marked shifts in community composition and ecosystem functioning. However, identifying the impacts of an introduced disease and distinguishing it from other forces that influence population dynamics (for example, climate) is challenging and requires abundance data that extend before and after the introduction. Here we use 26 yr of Breeding Bird Survey (BBS) data to determine the impact of West Nile virus (WNV) on 20 potential avian hosts across North America. We demonstrate significant changes in population trajectories for seven species from four families that concur with a priori predictions and the spatio-temporal intensity of pathogen transmission. The American crow population declined by up to 45% since WNV arrival, and only two of the seven species with documented impact recovered to pre-WNV levels by 2005. Our findings demonstrate the potential impacts of an invasive species on a diverse faunal assemblage across broad geographical scales, and underscore the complexity of subsequent community response.


Assuntos
Doenças das Aves/mortalidade , Doenças das Aves/virologia , Aves/fisiologia , Aves/virologia , Febre do Nilo Ocidental/veterinária , Vírus do Nilo Ocidental/fisiologia , Animais , Doenças das Aves/epidemiologia , Aves/classificação , Coleta de Dados , Maryland/epidemiologia , América do Norte/epidemiologia , Densidade Demográfica , Aves Canoras/classificação , Aves Canoras/fisiologia , Aves Canoras/virologia , Taxa de Sobrevida , Febre do Nilo Ocidental/epidemiologia , Febre do Nilo Ocidental/mortalidade , Vírus do Nilo Ocidental/isolamento & purificação
14.
J Med Entomol ; 59(3): 843-854, 2022 05 11.
Artigo em Inglês | MEDLINE | ID: mdl-35388898

RESUMO

Environmental conditions associated with urbanization are likely to influence the composition and abundance of mosquito (Diptera, Culicidae) assemblages through effects on juvenile stages, with important consequences for human disease risk. We present six years (2011-2016) of weekly juvenile mosquito data from distributed standardized ovitraps and evaluate how variation in impervious cover and temperature affect the composition and abundance of container-breeding mosquito species in Maryland, USA. Species richness and evenness were lowest at sites with high impervious cover (>60% in 100-m buffer). However, peak diversity was recorded at sites with intermediate impervious cover (28-35%). Four species were observed at all sites, including two recent invasives (Aedes albopictus Skuse, Ae. japonicus Theobald), an established resident (Culex pipiens L), and one native (Cx. restuans Theobald). All four are viral vectors in zoonotic or human transmission cycles. Temperature was a positive predictor of weekly larval abundance during the growing season for each species, as well as a positive predictor of rapid pupal development. Despite being observed at all sites, each species responded differently to impervious cover. Abundance of Ae. albopictus larvae was positively associated with impervious cover, emphasizing that this medically-important vector not only persists in the warmer, impervious urban landscape but is positively associated with it. Positive temperature effects in our models of larval abundance and pupae occurrence in container habitats suggest that these four vector species are likely to continue to be present and abundant in temperate cities under future temperature scenarios.


Assuntos
Aedes , Arbovírus , Culex , Animais , Ecossistema , Larva , Mosquitos Vetores , Pupa , Urbanização
15.
Ecology ; 92(9): 1789-98, 2011 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-21939075

RESUMO

Geographic variation in the population dynamics of a species can result from regional variability in climate and how it affects reproduction and survival. Identifying such effects for migratory birds requires the integration of population models with knowledge of migratory connectivity between breeding and nonbreeding areas. We used Bayesian hierarchical models with 26 years of Breeding Bird Survey data (1982-2007) to investigate the impacts of breeding- and nonbreeding-season climate on abundance of American Redstarts (Setophaga ruticilla) across the species range. We focused on 15 populations defined by Bird Conservation Regions, and we included variation across routes and observers as well as temporal trends and climate effects. American Redstart populations that breed in eastern North America showed increased abundance following winters with higher plant productivity in the Caribbean where they are expected to overwinter. In contrast, western breeding populations showed little response to conditions in their expected wintering areas in west Mexico, perhaps reflecting lower migratory connectivity or differential effects of winter rainfall on individuals across the species range. Unlike the case with winter climate, we found few effects of temperature prior to arrival in spring (March-April) or during the nesting period (May-June) on abundance the following year. Eight populations showed significant changes in abundance, with the steepest declines in the Atlantic Northern Forest (-3.4%/yr) and the greatest increases in the Prairie Hardwood Transition (4%/yr). This study emphasizes how the effects of climate on populations of migratory birds are context dependent and can vary depending on geographic location and the period of the annual cycle. Such knowledge is essential for predicting regional variation in how populations of a species might vary in their response to climate change.


Assuntos
Migração Animal , Mudança Climática , Reprodução/fisiologia , Estações do Ano , Aves Canoras/fisiologia , Animais , América do Norte , Densidade Demográfica
16.
Ecol Appl ; 21(5): 1443-60, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21830694

RESUMO

Ecologists worldwide are challenged to contribute solutions to urgent and pressing environmental problems by forecasting how populations, communities, and ecosystems will respond to global change. Rising to this challenge requires organizing ecological information derived from diverse sources and formally assimilating data with models of ecological processes. The study of infectious disease has depended on strategies for integrating patterns of observed disease incidence with mechanistic process models since John Snow first mapped cholera cases around a London water pump in 1854. Still, zoonotic and vector-borne diseases increasingly affect human populations, and methods used to successfully characterize directly transmitted diseases are often insufficient. We use four case studies to demonstrate that advances in disease forecasting require better understanding of zoonotic host and vector populations, as well of the dynamics that facilitate pathogen amplification and disease spillover into humans. In each case study, this goal is complicated by limited data, spatiotemporal variability in pathogen transmission and impact, and often, insufficient biological understanding. We present a conceptual framework for data-model fusion in infectious disease research that addresses these fundamental challenges using a hierarchical state-space structure to (1) integrate multiple data sources and spatial scales to inform latent parameters, (2) partition uncertainty in process and observation models, and (3) explicitly build upon existing ecological and epidemiological understanding. Given the constraints inherent in the study of infectious disease and the urgent need for progress, fusion of data and expertise via this type of conceptual framework should prove an indispensable tool.


Assuntos
Doenças Transmissíveis Emergentes/epidemiologia , Doenças Transmissíveis/epidemiologia , Previsões/métodos , Modelos Biológicos , Modelos Estatísticos , Animais , Dengue/epidemiologia , Surtos de Doenças/estatística & dados numéricos , Saúde Global , Humanos , Doença de Lyme/epidemiologia , Síndrome Respiratória Aguda Grave/epidemiologia , Febre do Nilo Ocidental/epidemiologia , Zoonoses
17.
Ecol Appl ; 21(5): 1429-42, 2011 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-21830693

RESUMO

Several forces are converging to transform ecological research and increase its emphasis on quantitative forecasting. These forces include (1) dramatically increased volumes of data from observational and experimental networks, (2) increases in computational power, (3) advances in ecological models and related statistical and optimization methodologies, and most importantly, (4) societal needs to develop better strategies for natural resource management in a world of ongoing global change. Traditionally, ecological forecasting has been based on process-oriented models, informed by data in largely ad hoc ways. Although most ecological models incorporate some representation of mechanistic processes, today's models are generally not adequate to quantify real-world dynamics and provide reliable forecasts with accompanying estimates of uncertainty. A key tool to improve ecological forecasting and estimates of uncertainty is data assimilation (DA), which uses data to inform initial conditions and model parameters, thereby constraining a model during simulation to yield results that approximate reality as closely as possible. This paper discusses the meaning and history of DA in ecological research and highlights its role in refining inference and generating forecasts. DA can advance ecological forecasting by (1) improving estimates of model parameters and state variables, (2) facilitating selection of alternative model structures, and (3) quantifying uncertainties arising from observations, models, and their interactions. However, DA may not improve forecasts when ecological processes are not well understood or never observed. Overall, we suggest that DA is a key technique for converting raw data into ecologically meaningful products, which is especially important in this era of dramatically increased availability of data from observational and experimental networks.


Assuntos
Simulação por Computador , Ecologia/métodos , Ecologia/tendências , Previsões/métodos , Modelos Teóricos , Fatores de Tempo
18.
Ecol Res ; 26(5): 909-916, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-32214652

RESUMO

West Nile virus (WNV) was first detected in the western hemisphere during the summer of 1999, reawakening US public awareness of the potential severity of vector-borne pathogens. Since its New World introduction, WNV has caused disease in human, avian, and mammalian communities across the continent. American crows (Corvus brachyrhynchos) are a highly susceptible WNV host and when modeled appropriately, changes in crow abundances can serve as a proxy for the spatio-temporal presence of WNV. We use the dramatic declines in abundance of this avian host to examine spatio-temporal heterogeneity in WNV intensity across the northeastern US, where WNV was first detected. Using data from the Breeding Bird Survey, we identify significant declines in crow abundance after WNV emergence that are associated with lower forest cover, more urban land use, and warmer winter temperatures. Importantly, we document continued declines as WNV was present in an area over consecutive years. Our findings support the urban-pathogen link that human WNV incidence studies have shown. For each 1% increase in urban land cover we expect an additional 5% decline in the log crow abundance beyond the decline attributed to WNV in undeveloped areas. We also demonstrate a significant relationship between above-average winter temperatures and WNV-related declines in crow abundance. The mechanisms behind these patterns remain uncertain and hypotheses requiring further research are suggested. In particular, a strong positive relationship between urban land cover and winter temperatures may confound mechanistic understanding, especially when a temperature-sensitive vector is involved.

19.
Insects ; 12(11)2021 Nov 04.
Artigo em Inglês | MEDLINE | ID: mdl-34821793

RESUMO

Condition-specific competition, when environmental conditions alter the outcome of competition, can foster the persistence of resident species after the invasion of a competitively superior invader. We test whether condition-specific competition can facilitate the areawide persistence of the resident and principal West Nile virus vector mosquito Culex pipiens with the competitively superior invasive Aedes albopictus in water from different urban container habitats. (2) Methods: We tested the effects of manipulated numbers of A. albopictus on C. pipiens' survival and development in water collected from common functional and discarded containers in Baltimore, MD, USA. The experiment was conducted with typical numbers of larvae found in field surveys of C. pipiens and A. albopictus and container water quality. (3) Results: We found increased densities of A. albopictus negatively affected the survivorship and development of C. pipiens in water from discarded containers but had little effect in water from functional containers. This finding was driven by water from trash cans, which allowed consistently higher C. pipiens' survival and development and had greater mean ammonia and nitrate concentrations that can promote microbial food than other container types. (4) Conclusions: These results suggest that the contents of different urban containers alter the effects of invasive A. albopictus competition on resident C. pipiens, that trash cans, in particular, facilitate the persistence of C. pipiens, and that there could be implications for West Nile virus risk as a result.

20.
J Med Entomol ; 58(3): 1424-1428, 2021 05 15.
Artigo em Inglês | MEDLINE | ID: mdl-33257956

RESUMO

The temperate United States has experienced increasing incidence of mosquito-borne diseases. Recent studies conducted in Baltimore, MD have demonstrated a negative relationship between abundances of Aedes albopictus (Skuse) and Culex mosquitoes and mean neighborhood income level, but have not looked at the presence of pathogens. Mosquitoes collected from five socioeconomically variable neighborhoods were tested for infection by West Nile, chikungunya, and Zika viruses in 2015 and 2016, and again from four of the neighborhoods in 2017. Minimum infection rates of pooled samples were compared among neighborhoods for each year, as well as among individual blocks in 2017. West Nile virus was detected in both Ae. albopictus and Culex pools from all neighborhoods sampled in 2015 and 2017. No infected pools were detected in any year for chikungunya or Zika viruses, and none of the target viruses were detected in 2016. Infection rates were consistently higher for Culex than for Ae. albopictus. Minimum infection rate was negatively associated with mean neighborhood income for both species in 2015. Although earlier work has shown a positive association between block-level abandonment and mosquito abundance, no association was detected in this study. Still, we demonstrate that viral infection in mosquito pools can differ substantially across adjacent urban neighborhoods that vary by income. Though trap security and accessibility often inform city sampling locations, detecting and managing arboviral risk requires surveillance across neighborhoods that vary in socioeconomics, including lower income areas that may be less accessible and secure but have higher infection rates.


Assuntos
Aedes/virologia , Culex/virologia , População Urbana/estatística & dados numéricos , Vírus do Nilo Ocidental/fisiologia , Animais , Baltimore , Pobreza , Febre do Nilo Ocidental/transmissão
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