Automatic phase aberration compensation for digital holographic microscopy based on phase variation minimization.

We propose a numerical and totally automatic phase aberration compensation method in digital holographic microscopy. The phase aberrations are extracted in a nonlinear optimization procedure in which the phase variation of the reconstructed object wave is minimized. Not only phase curvature but also high-order aberrations could be corrected without extra devices. The correction is directly carried out with the wrapped phase map, which is not affected by phase unwrapping or fitting errors. Numerical simulation proves that the proposed method is more accurate than the conventional surface fitting method without selecting a cell-free background. Experimental results demonstrate the availability of the proposed method in real-time analysis of living cells.

[Compressed sensing magnetic resonance image reconstruction based on double sparse model].

The medical magnetic resonance (MR) image reconstruction is one of the key technologies in the field of magnetic resonance imaging (MRI). The compressed sensing (CS) theory indicates that the image can be reconstructed accurately from highly undersampled measurements by using the sparsity of the MR image. However, how to improve the image reconstruction quality by employing more sparse priors of the image becomes a crucial issue for MRI. In this paper, an adaptive image reconstruction model fusing the double dictionary learning is proposed by exploiting sparse priors of the MR image in the image domain and transform domain. The double sparse model which combines synthesis sparse model with sparse transform model is applied to the CS MR image reconstruction according to the complementarity of synthesis sparse and sparse transform model. Making full use of the two sparse priors of the image under the synthesis dictionary and transform dictionary learning, the proposed model is tackled in stages by the iterative alternating minimization algorithm. The solution procedure needs to utilize the synthesis and transform K-singular value decomposition (K-SVD) algorithms. Compared with the existing MRI models, the experimental results show that the proposed model can more efficiently improve the quality of the image reconstruction, and has faster convergence speed and better robustness to noise.

Multi-Center Agent Loss for Visual Identification of Chinese Simmental in the Wild.

Visual identification of cattle in the wild provides an essential way for real-time cattle monitoring applicable to precision livestock farming. Chinese Simmental exhibit a yellow or brown coat with individually characteristic white stripes or spots, which makes a biometric identifier for identification possible. This work employed the observable biometric characteristics to perform cattle identification with an image from any viewpoint. We propose multi-center agent loss to jointly supervise the learning of DCNNs by SoftMax with multiple centers and the agent triplet. We reformulated SoftMax with multiple centers to reduce intra-class variance by offering more centers for feature clustering. Then, we utilized the agent triplet, which consisted of the features and the agents, to enforce separation among different classes. As there are no datasets for the identification of cattle with multi-view images, we created CNSID100, consisting of 11,635 images from 100 Chinese Simmental identities. Our proposed loss was comprehensively compared with several well-known losses on CNSID100 and OpenCows2020 and analyzed in an engineering application in the farming environment. It was encouraging to find that our approach outperformed the state-of-the-art models on the datasets above. The engineering application demonstrated that our pipeline with detection and recognition is promising for continuous cattle identification in real livestock farming scenarios.

RatUNet: residual U-Net based on attention mechanism for image denoising.

Deep convolutional neural networks (CNNs) have been very successful in image denoising. However, with the growth of the depth of plain networks, CNNs may result in performance degradation. The lack of network depth leads to the limited ability of the network to extract image features and difficults to fuse the shallow image features into the deep image information. In this work, we propose an improved deep convolutional U-Net framework (RatUNet) for image denoising. RatUNet improves Unet as follows: (1) RatUNet uses the residual blocks of ResNet to deepen the network depth, so as to avoid the network performance saturation. (2) RatUNet improves the down-sampling method, which is conducive to extracting image features. (3) RatUNet improves the up-sampling method, which is used to restore image details. (4) RatUNet improves the skip-connection method of the U-Net network, which is used to fuse the shallow feature information into the deep image details, and it is more conducive to restore the clean image. (5) In order to better process the edge information of the image, RatUNet uses depthwise and polarized self-attention mechanism to guide a CNN for image denoising. Extensive experiments show that our RatUNet is more efficient and has better performance than existing state-of-the-art denoising methods, especially in SSIM metrics, the denoising effect of the RatUNet achieves very high performance. Visualization results show that the denoised image by RatUNet is smoother and sharper than other methods.

Compressed sensing MRI based on image decomposition model and group sparsity.

The image representation plays an important role in compressed sensing magnetic resonance imaging (CSMRI). However, how to adaptive sparsely represent images is a challenge for accurately reconstructing magnetic resonance (MR) images from highly undersampled data with noise. In order to further improve the reconstruction quality of the MR image, this paper first proposes tight frame-based group sparsity (TFGS) regularization that can capture the structure information of images appropriately, then TFGS regularization is employed to the image cartoon-texture decomposition model to construct CSMRI algorithm, termed cartoon-texture decomposition CSMRI algorithm (CD-MRI). CD-MRI effectively integrates the total variation and TFGS regularization into the image cartoon-texture decomposition framework, and utilizes the sparse priors of image cartoon and texture components to reconstruct MR images. Virtually, CD-MRI exploits the global sparse representations of image cartoon components by the total variation regularization, and explores group sparse representations of image texture components via the adaptive tight frame learning technique and group sparsity regularization. The alternating iterative method combining with the majorization-minimization algorithm is applied to solve the formulated optimization problem. Finally, simulation experiments demonstrate that the proposed algorithm can achieve high-quality MR image reconstruction from undersampled K-space data, and can remove noise in different sampling schemes. Compared to the previous CSMRI algorithms, the proposed approach can lead to better image reconstruction performance and better robustness to noise.

Review of Sparse Representation-Based Classification Methods on EEG Signal Processing for Epilepsy Detection, Brain-Computer Interface and Cognitive Impairment.

At present, the sparse representation-based classification (SRC) has become an important approach in electroencephalograph (EEG) signal analysis, by which the data is sparsely represented on the basis of a fixed dictionary or learned dictionary and classified based on the reconstruction criteria. SRC methods have been used to analyze the EEG signals of epilepsy, cognitive impairment and brain computer interface (BCI), which made rapid progress including the improvement in computational accuracy, efficiency and robustness. However, these methods have deficiencies in real-time performance, generalization ability and the dependence of labeled sample in the analysis of the EEG signals. This mini review described the advantages and disadvantages of the SRC methods in the EEG signal analysis with the expectation that these methods can provide the better tools for analyzing EEG signals.