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1.
Environ Sci Technol ; 53(24): 14273-14284, 2019 12 17.
Artigo em Inglês | MEDLINE | ID: mdl-31751506

RESUMO

Phenazine-1-carboxylic acid (PCA) is a broad-spectrum antibiotic produced by rhizobacteria in the dryland wheat fields of the Columbia Plateau. PCA and other phenazines reductively dissolve Fe and Mn oxyhydroxides in bacterial culture systems, but the impact of PCA upon Fe and Mn cycling in the rhizosphere is unknown. Here, concentrations of dithionite-extractable and poorly crystalline Fe were approximately 10% and 30-40% higher, respectively, in dryland and irrigated rhizospheres inoculated with the PCA-producing (PCA+) strain Pseudomonas synxantha 2-79 than in rhizospheres inoculated with a PCA-deficient mutant. However, rhizosphere concentrations of Fe(II) and Mn did not differ significantly, indicating that PCA-mediated redox transformations of Fe and Mn were transient or were masked by competing processes. Total Fe and Mn uptake into wheat biomass also did not differ significantly, but the PCA+ strain significantly altered Fe translocation into shoots. X-ray absorption near edge spectroscopy revealed an abundance of Fe-bearing oxyhydroxides and phyllosilicates in all rhizospheres. These results indicate that the PCA+ strain enhanced the reactivity and mobility of Fe derived from soil minerals without producing parallel changes in plant Fe uptake. This is the first report that directly links significant alterations of Fe-bearing minerals in the rhizosphere to a single bacterial trait.


Assuntos
Rizosfera , Triticum , Ferro , Minerais , Fenazinas , Microbiologia do Solo
2.
Environ Microbiol ; 20(6): 2178-2194, 2018 06.
Artigo em Inglês | MEDLINE | ID: mdl-29687554

RESUMO

Phenazine-1-carboxylic acid (PCA) is produced by rhizobacteria in dryland but not in irrigated wheat fields of the Pacific Northwest, USA. PCA promotes biofilm development in bacterial cultures and bacterial colonization of wheat rhizospheres. However, its impact upon biofilm development has not been demonstrated in the rhizosphere, where biofilms influence terrestrial carbon and nitrogen cycles with ramifications for crop and soil health. Furthermore, the relationships between soil moisture and the rates of PCA biosynthesis and degradation have not been established. In this study, expression of PCA biosynthesis genes was upregulated relative to background transcription, and persistence of PCA was slightly decreased in dryland relative to irrigated wheat rhizospheres. Biofilms in dryland rhizospheres inoculated with the PCA-producing (PCA+ ) strain Pseudomonas synxantha 2-79RN10 were more robust than those in rhizospheres inoculated with an isogenic PCA-deficient (PCA- ) mutant strain. This trend was reversed in irrigated rhizospheres. In dryland PCA+ rhizospheres, the turnover of 15 N-labelled rhizobacterial biomass was slower than in the PCA- and irrigated PCA+ treatments, and incorporation of bacterial 15 N into root cell walls was observed in multiple treatments. These results indicate that PCA promotes biofilm development in dryland rhizospheres, and likely influences crop nutrition and soil health in dryland wheat fields.


Assuntos
Raízes de Plantas/microbiologia , Pseudomonas/fisiologia , Solo/química , Triticum/microbiologia , Biofilmes/crescimento & desenvolvimento , Biomassa , Fenazinas/farmacologia , Rizosfera , Microbiologia do Solo
3.
Proc Natl Acad Sci U S A ; 110(16): 6346-51, 2013 Apr 16.
Artigo em Inglês | MEDLINE | ID: mdl-23538304

RESUMO

The mineral-respiring bacterium Shewanella oneidensis uses a protein complex, MtrCAB, composed of two decaheme cytochromes, MtrC and MtrA, brought together inside a transmembrane porin, MtrB, to transport electrons across the outer membrane to a variety of mineral-based electron acceptors. A proteoliposome system containing a pool of internalized electron carriers was used to investigate how the topology of the MtrCAB complex relates to its ability to transport electrons across a lipid bilayer to externally located Fe(III) oxides. With MtrA facing the interior and MtrC exposed on the outer surface of the phospholipid bilayer, the established in vivo orientation, electron transfer from the interior electron carrier pool through MtrCAB to solid-phase Fe(III) oxides was demonstrated. The rates were 10(3) times higher than those reported for reduction of goethite, hematite, and lepidocrocite by S. oneidensis, and the order of the reaction rates was consistent with those observed in S. oneidensis cultures. In contrast, established rates for single turnover reactions between purified MtrC and Fe(III) oxides were 10(3) times lower. By providing a continuous flow of electrons, the proteoliposome experiments demonstrate that conduction through MtrCAB directly to Fe(III) oxides is sufficient to support in vivo, anaerobic, solid-phase iron respiration.


Assuntos
Citocromos/metabolismo , Transporte de Elétrons/fisiologia , Compostos Férricos/metabolismo , Modelos Moleculares , Complexos Multiproteicos/química , Complexos Multiproteicos/metabolismo , Shewanella/metabolismo , Transportadores de Cassetes de Ligação de ATP/química , Transportadores de Cassetes de Ligação de ATP/metabolismo , Sequência de Aminoácidos , Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Grupo dos Citocromos c/química , Grupo dos Citocromos c/metabolismo , Immunoblotting , Anotação de Sequência Molecular , Dados de Sequência Molecular
4.
Analyst ; 139(7): 1609-13, 2014 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-24571001

RESUMO

A novel microfluidic reactor for biofilm growth and in situ characterization using time-of-flight secondary ion mass spectrometry (ToF-SIMS) was constructed to enable two-dimensional chemical imaging of hydrated biofilms. We demonstrate the detection of characteristic fatty acid fragments from microfluidic reactor-grown biofilms and illustrate advantages of hydrated-state ToF-SIMS imaging.


Assuntos
Biofilmes/crescimento & desenvolvimento , Técnicas Analíticas Microfluídicas/métodos , Imagem Molecular/métodos , Espectrometria de Massa de Íon Secundário/métodos , Água , Desenho de Equipamento , Técnicas Analíticas Microfluídicas/instrumentação , Imagem Molecular/instrumentação , Espectrometria de Massa de Íon Secundário/instrumentação , Água/química
5.
Proc Natl Acad Sci U S A ; 108(23): 9384-9, 2011 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-21606337

RESUMO

Some bacterial species are able to utilize extracellular mineral forms of iron and manganese as respiratory electron acceptors. In Shewanella oneidensis this involves decaheme cytochromes that are located on the bacterial cell surface at the termini of trans-outer-membrane electron transfer conduits. The cell surface cytochromes can potentially play multiple roles in mediating electron transfer directly to insoluble electron sinks, catalyzing electron exchange with flavin electron shuttles or participating in extracellular intercytochrome electron exchange along "nanowire" appendages. We present a 3.2-Å crystal structure of one of these decaheme cytochromes, MtrF, that allows the spatial organization of the 10 hemes to be visualized for the first time. The hemes are organized across four domains in a unique crossed conformation, in which a staggered 65-Å octaheme chain transects the length of the protein and is bisected by a planar 45-Å tetraheme chain that connects two extended Greek key split ß-barrel domains. The structure provides molecular insight into how reduction of insoluble substrate (e.g., minerals), soluble substrates (e.g., flavins), and cytochrome redox partners might be possible in tandem at different termini of a trifurcated electron transport chain on the cell surface.


Assuntos
Proteínas da Membrana Bacteriana Externa/química , Grupo dos Citocromos c/química , Citocromos/química , Heme/química , Sequência de Aminoácidos , Proteínas da Membrana Bacteriana Externa/genética , Proteínas da Membrana Bacteriana Externa/metabolismo , Sítios de Ligação/genética , Cristalografia por Raios X , Cisteína/química , Cisteína/genética , Cisteína/metabolismo , Grupo dos Citocromos c/genética , Grupo dos Citocromos c/metabolismo , Citocromos/genética , Citocromos/metabolismo , Dissulfetos/química , Espectroscopia de Ressonância de Spin Eletrônica , Transporte de Elétrons , Mononucleotídeo de Flavina/química , Mononucleotídeo de Flavina/metabolismo , Mononucleotídeo de Flavina/farmacologia , Heme/metabolismo , Ferro/química , Ferro/metabolismo , Ferro/farmacologia , Modelos Moleculares , Dados de Sequência Molecular , Oxirredução/efeitos dos fármacos , Potenciometria , Ligação Proteica , Estrutura Terciária de Proteína , Shewanella/genética , Shewanella/metabolismo
6.
Proc Natl Acad Sci U S A ; 106(52): 22169-74, 2009 Dec 29.
Artigo em Inglês | MEDLINE | ID: mdl-20018742

RESUMO

A number of species of Gram-negative bacteria can use insoluble minerals of Fe(III) and Mn(IV) as extracellular respiratory electron acceptors. In some species of Shewanella, deca-heme electron transfer proteins lie at the extracellular face of the outer membrane (OM), where they can interact with insoluble substrates. To reduce extracellular substrates, these redox proteins must be charged by the inner membrane/periplasmic electron transfer system. Here, we present a spectro-potentiometric characterization of a trans-OM icosa-heme complex, MtrCAB, and demonstrate its capacity to move electrons across a lipid bilayer after incorporation into proteoliposomes. We also show that a stable MtrAB subcomplex can assemble in the absence of MtrC; an MtrBC subcomplex is not assembled in the absence of MtrA; and MtrA is only associated to the membrane in cells when MtrB is present. We propose a model for the modular organization of the MtrCAB complex in which MtrC is an extracellular element that mediates electron transfer to extracellular substrates and MtrB is a trans-OM spanning beta-barrel protein that serves as a sheath, within which MtrA and MtrC exchange electrons. We have identified the MtrAB module in a range of bacterial phyla, suggesting that it is widely used in electron exchange with the extracellular environment.


Assuntos
Transportadores de Cassetes de Ligação de ATP/metabolismo , Proteínas da Membrana Bacteriana Externa/metabolismo , Proteínas de Bactérias/metabolismo , Grupo dos Citocromos c/metabolismo , Transporte de Elétrons , Shewanella/metabolismo , Transportadores de Cassetes de Ligação de ATP/química , Transportadores de Cassetes de Ligação de ATP/genética , Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Grupo dos Citocromos c/química , Grupo dos Citocromos c/genética , Deleção de Genes , Genes Bacterianos , Ferro/metabolismo , Cinética , Manganês/metabolismo , Micelas , Modelos Biológicos , Complexos Multiproteicos , Oxirredução , Filogenia , Domínios e Motivos de Interação entre Proteínas , Proteolipídeos , Shewanella/genética , Termodinâmica
7.
Ecotoxicol Environ Saf ; 80: 195-202, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22444725

RESUMO

Foam delivery technology (FDT) uses surfactant based foam to immobilize subsurface contaminants in situ. Where traditional approaches are impractical, FDT has the potential to overcome many of the technical challenges facing the remediation of contaminated deep vadose zone environments. However, little is known about the effects these reactive chemicals may have on microorganisms inhabiting the contaminated subsurface. In addition, there are currently no standard assays to assess microbial responses to subsurface remedial treatments while these agents are under development. The objective of this study was to develop a rapid laboratory assay to assess the potential growth inhibition and/or stimulation of microorganisms following exposure to candidate FDT components. Calcium polysulfide (CPS) and several surfactants (i.e. sodium laureth sulfate (SLES), sodium dodecyl sulfate (SDS), cocamidopropyl betaine (CAPB) and NINOL40-CO) have diverse chemistries and are candidate components of FDT. Shewanella oneidensis MR-1 cultures were exposed to a range of concentrations of these chemicals to determine the minimum bactericidal concentration (MBC) and the growth and viability potential of these components. Concentrations of SDS higher than 700 µM were toxic to S. oneidensis MR-1 growth over the course of four days of exposure. The relative acute toxicity order for these compounds was SDS >> CPS >> NINOL 40-CO>SLES≥CAPB. Dose dependent growth decreases (20-100mM) were observed in the CAPB and SLES treated cultures and both CPS and NINOL 40-CO were toxic at all concentrations tested (1.45-7.25 mM CPS). Both SLES (20-100mM) and SDS at lower concentrations (20-500 µM) were stimulatory to S. oneidensis MR-1 indicating a capacity to be used as a carbon source. These studies also identified potentially key component characteristics, such as precipitate formation and oxygen availability, which may prove valuable in assessing the response of subsurface microorganisms. This benchtop system provides a capability to assess adverse microbial-remediation responses and contributes to the development of in situ remedial chemistries before they are deployed in the field.


Assuntos
Compostos de Cálcio/química , Shewanella/efeitos dos fármacos , Sulfetos/química , Tensoativos/toxicidade , Tiossulfatos/química , Recuperação e Remediação Ambiental/métodos , Oxigênio/metabolismo , Shewanella/crescimento & desenvolvimento , Dodecilsulfato de Sódio/análogos & derivados , Dodecilsulfato de Sódio/metabolismo , Dodecilsulfato de Sódio/toxicidade , Tensoativos/metabolismo
8.
Environ Microbiol ; 13(4): 1018-31, 2011 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-21251176

RESUMO

The composition of extracellular polymeric substances (EPS) from Shewanella sp. HRCR-1 biofilms was investigated using infrared spectroscopy and proteomics to provide insight into potential ecophysiological functions and redox activity of the EPS. Both bound and loosely associated EPS were extracted from Shewanella sp. HRCR-1 biofilms prepared using a hollow-fibre membrane biofilm reactor. Fourier transform infrared spectra revealed the presence of proteins, polysaccharides, nucleic acids, membrane lipids and fatty acids in the EPS fractions. Using a global proteomic approach, a total of 58 extracellular and outer membrane proteins were identified in the EPS. These included homologues of multiple Shewanella oneidensis MR-1 proteins that potentially contribute to key physiological biofilm processes, such as biofilm-promoting protein BpfA, surface-associated serine protease, nucleotidases (CpdB and UshA), an extracellular lipase, and oligopeptidases (PtrB and a M13 family oligopeptidase lipoprotein). In addition, 20 redox proteins were found in extracted EPS. Among the detected redox proteins were the homologues of two S. oneidensis MR-1 c-type cytochromes, MtrC and OmcA, which have been implicated in extracellular electron transfer. Given their detection in the EPS of Shewanella sp. HRCR-1 biofilms, c-type cytochromes may contribute to the possible redox activity of the biofilm matrix and play important roles in extracellular electron transfer reactions.


Assuntos
Biofilmes , Espaço Extracelular/química , Polímeros/química , Shewanella/química , Proteínas de Bactérias/análise , Reatores Biológicos , Cromatografia Líquida , Grupo dos Citocromos c/química , Transporte de Elétrons , Proteínas de Membrana/análise , Oxirredução , Proteômica , Espectroscopia de Infravermelho com Transformada de Fourier , Espectrometria de Massas em Tandem
9.
Appl Environ Microbiol ; 77(15): 5521-3, 2011 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-21652739

RESUMO

UndA(HRCR-6) was identified from the metal-reducing bacterium Shewanella sp. strain HRCR-6. Both in vivo and in vitro characterization results indicate that UndA(HRCR-6) is an outer membrane endecaheme c-type cytochrome and probably has a key functional role in the extracellular reduction of iron [Fe(III)] oxides and uranium [U(VI)] by Shewanella sp. HRCR-6.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Grupo dos Citocromos c/metabolismo , Shewanella/enzimologia , Sequência de Aminoácidos , Proteínas da Membrana Bacteriana Externa/análise , Sequência de Bases , Biodegradação Ambiental , Grupo dos Citocromos c/análise , Grupo dos Citocromos c/genética , Compostos Férricos/metabolismo , Oxirredução , Filogenia , Reação em Cadeia da Polimerase , Análise de Sequência de DNA , Shewanella/genética , Urânio/metabolismo
10.
Appl Environ Microbiol ; 77(4): 1254-62, 2011 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-21169451

RESUMO

Microbe-mineral and -metal interactions represent a major intersection between the biosphere and geosphere but require high-resolution imaging and analytical tools for investigation of microscale associations. Electron microscopy has been used extensively for geomicrobial investigations, and although used bona fide, the traditional methods of sample preparation do not preserve the native morphology of microbiological components, especially extracellular polymers. Herein, we present a direct comparative analysis of microbial interactions by conventional electron microscopy approaches with imaging at room temperature and a suite of cryogenic electron microscopy methods providing imaging in the close-to-natural hydrated state. In situ, we observed an irreversible transformation of the hydrated bacterial extracellular polymers during the traditional dehydration-based sample preparation that resulted in their collapse into filamentous structures. Dehydration-induced polymer collapse can lead to inaccurate spatial relationships and hence could subsequently affect conclusions regarding the nature of interactions between microbial extracellular polymers and their environment.


Assuntos
Microscopia Crioeletrônica/métodos , Microscopia Eletrônica/métodos , Polímeros/metabolismo , Shewanella/química , Shewanella/ultraestrutura , Desidratação , Metais/metabolismo , Interações Microbianas , Minerais/metabolismo , Shewanella/fisiologia
11.
Environ Sci Technol ; 45(13): 5483-90, 2011 Jul 01.
Artigo em Inglês | MEDLINE | ID: mdl-21627155

RESUMO

The goal of this study was to quantify the contribution of extracellular polymeric substances (EPS) to U(VI) immobilization by Shewanella sp. HRCR-1. Through comparison of U(VI) immobilization using cells with bound EPS (bEPS) and cells with minimal EPS, we show that (i) bEPS from Shewanella sp. HRCR-1 biofilms contribute significantly to U(VI) immobilization, especially at low initial U(VI) concentrations, through both sorption and reduction; (ii) bEPS can be considered a functional extension of the cells for U(VI) immobilization and they likely play more important roles at lower initial U(VI) concentrations; and (iii) the U(VI) reduction efficiency is dependent upon the initial U(VI) concentration and decreases at lower concentrations. To quantify the relative contributions of sorption and reduction to U(VI) immobilization by EPS fractions, we isolated loosely associated EPS (laEPS) and bEPS from Shewanella sp. HRCR-1 biofilms grown in a hollow fiber membrane biofilm reactor and tested their reactivity with U(VI). We found that, when reduced, the isolated cell-free EPS fractions could reduce U(VI). Polysaccharides in the EPS likely contributed to U(VI) sorption and dominated the reactivity of laEPS, while redox active components (e.g., outer membrane c-type cytochromes), especially in bEPS, possibly facilitated U(VI) reduction.


Assuntos
Biofilmes , Espaço Extracelular/química , Substâncias Macromoleculares/metabolismo , Polissacarídeos/metabolismo , Shewanella/química , Compostos de Urânio/metabolismo , Substâncias Macromoleculares/análise , Espectroscopia de Ressonância Magnética , Polissacarídeos/análise , Rios/microbiologia , Washington
12.
Environ Sci Technol ; 45(3): 951-7, 2011 Feb 01.
Artigo em Inglês | MEDLINE | ID: mdl-21210705

RESUMO

The fate of pertechnetate ((99)Tc(VII)O(4)(-)) during bioreduction was investigated in the presence of 2-line ferrihydrite (Fh) and various dissimilatory metal reducing bacteria (DMRB) (Geobacter, Anaeromyxobacter, Shewanella) in comparison with TcO(4)(-) bioreduction in the absence of Fh. In the presence of Fh, Tc was present primarily as a fine-grained Tc(IV)/Fe precipitate that was distinct from the Tc(IV)O(2)·nH(2)O solids produced by direct biological Tc(VII) reduction. Aqueous Tc concentrations (<0.2 µm) in the bioreduced Fh suspensions (1.7 to 3.2 × 10(-9) mol L(-1)) were over 1 order of magnitude lower than when TcO(4)(-) was biologically reduced in the absence of Fh (4.0 × 10(-8) to 1.0 × 10(-7) mol L(-1)). EXAFS analyses of the bioreduced Fh-Tc products were consistent with variable chain length Tc-O octahedra bonded to Fe-O octahedra associated with the surface of the residual or secondary Fe(III) oxide. In contrast, biogenic TcO(2)·nH(2)O had significantly more Tc-Tc second neighbors and a distinct long-range order consistent with small particle polymers of TcO(2). In Fe-rich subsurface sediments, the reduction of Tc(VII) by Fe(II) may predominate over direct microbial pathways, potentially leading to lower concentrations of aqueous (99)Tc(IV).


Assuntos
Deltaproteobacteria/metabolismo , Compostos Férricos/metabolismo , Poluentes Radioativos/metabolismo , Shewanella/metabolismo , Pertecnetato Tc 99m de Sódio/metabolismo , Biotransformação , Compostos Férricos/química , Geobacter/metabolismo , Myxococcales/metabolismo , Oxirredução , Poluentes Radioativos/química , Pertecnetato Tc 99m de Sódio/química , Espectroscopia por Absorção de Raios X
13.
Environ Microbiol ; 11(2): 534-43, 2009 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-19196283

RESUMO

Anaeromyxobacter dehalogenans strain 2CP-C reduces U(VI) and Tc(VII) to U(IV)O(2(s)) (uraninite) and Tc(IV)O(2(S)) respectively. Kinetic studies with resting cells revealed that U(VI) or Tc(VII) reduction rates using H(2) as electron donor exceeded those observed in acetate-amended incubations. The reduction of U(VI) by A. dehalogenans 2CP-C resulted in extracellular accumulation of approximately 5 nm uraninite nanoparticles in association with a lectin-binding extracellular polymeric substance (EPS). The electron donor did not affect UO(2(S)) nanoparticle size or association with EPS, but the utilization of acetate as the source of reducing equivalents resulted in distinct UO(2(S)) nanoparticle aggregates that were approximately 50 nm in diameter. In contrast, reduction of Tc(VII) by A. dehalogenans 2CP-C cell suspensions produced dense clusters of TcO(2) particles, which were localized within the cell periplasm and on the outside of the outer membrane. In addition to direct reduction, A. dehalogenans 2CP-C cell suspensions reduced Tc(VII) indirectly via an Fe(II)-mediated mechanism. Fe(II) produced by strain 2CP-C from either ferrihydrite or Hanford Site sediment rapidly removed (99)Tc(VII)O(4)(-) from solution. These findings expand our knowledge of the radionuclide reduction processes catalysed by Anaeromyxobacter spp. that may influence the fate and transport of radionuclide contaminants in the subsurface.


Assuntos
Elétrons , Myxococcales/metabolismo , Nanopartículas/microbiologia , Radioisótopos/metabolismo , Acetatos/metabolismo , Compostos Férricos/metabolismo , Compostos Ferrosos/metabolismo , Hidrogênio/metabolismo , Cinética , Oxirredução , Periplasma/química , Polímeros/metabolismo , Tecnécio/metabolismo , Urânio/metabolismo
14.
PLoS Biol ; 4(9): e268, 2006 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-16875436

RESUMO

Modern approaches for bioremediation of radionuclide contaminated environments are based on the ability of microorganisms to effectively catalyze changes in the oxidation states of metals that in turn influence their solubility. Although microbial metal reduction has been identified as an effective means for immobilizing highly-soluble uranium(VI) complexes in situ, the biomolecular mechanisms of U(VI) reduction are not well understood. Here, we show that c-type cytochromes of a dissimilatory metal-reducing bacterium, Shewanella oneidensis MR-1, are essential for the reduction of U(VI) and formation of extracellular UO(2) nanoparticles. In particular, the outer membrane (OM) decaheme cytochrome MtrC (metal reduction), previously implicated in Mn(IV) and Fe(III) reduction, directly transferred electrons to U(VI). Additionally, deletions of mtrC and/or omcA significantly affected the in vivo U(VI) reduction rate relative to wild-type MR-1. Similar to the wild-type, the mutants accumulated UO(2) nanoparticles extracellularly to high densities in association with an extracellular polymeric substance (EPS). In wild-type cells, this UO(2)-EPS matrix exhibited glycocalyx-like properties and contained multiple elements of the OM, polysaccharide, and heme-containing proteins. Using a novel combination of methods including synchrotron-based X-ray fluorescence microscopy and high-resolution immune-electron microscopy, we demonstrate a close association of the extracellular UO(2) nanoparticles with MtrC and OmcA (outer membrane cytochrome). This is the first study to our knowledge to directly localize the OM-associated cytochromes with EPS, which contains biogenic UO(2) nanoparticles. In the environment, such association of UO(2) nanoparticles with biopolymers may exert a strong influence on subsequent behavior including susceptibility to oxidation by O(2) or transport in soils and sediments.


Assuntos
Grupo dos Citocromos c/metabolismo , Shewanella/metabolismo , Compostos de Urânio/metabolismo , Proteínas da Membrana Bacteriana Externa/metabolismo , Biodegradação Ambiental , Glicocálix/química , Ferro/metabolismo , Nanopartículas Metálicas/química , Oxirredução , Fósforo/metabolismo , Polissacarídeos Bacterianos/metabolismo , Distribuição Tecidual , Urânio/farmacocinética , Compostos de Urânio/farmacocinética
15.
Sci Rep ; 9(1): 8055, 2019 05 30.
Artigo em Inglês | MEDLINE | ID: mdl-31147559

RESUMO

The agar culture plate has played a crucial role in bacteriology since the origins of the discipline and is a staple bioanalytical method for efforts ranging from research to standard clinical diagnostic tests. However, plating, inoculating, and waiting for microbes to develop colonies that are visible is time-consuming. In this work, we demonstrate white-light interferometry (WLI) as a practical tool for accelerated and improved measurement of bacterial cultures. High resolution WLI surface profile imaging was used for nondestructive characterization and counting of bacterial colonies on agar before they became visible to the naked eye. The three-dimensional (3D) morphology of Gram-negative (Pseudomonas fluorescens) and Gram-positive (Bacillus thuringiensis) bacterial species were monitored with WLI over time by collecting surface profiles of colonies on agar plates with high vertical resolution (3-5 nanometers) and large field of view (3-5 mm). This unique combination of sensitive vertical resolution and large field of view uniquely provided by WLI enables measurement of colony morphologies and nondestructive monitoring of hundreds of microcolonies. Individual bacteria were imaged within the first few hours after plating and colonies were accurately counted with results comparing favorably to counts made by traditional methods that require much longer wait times. Nondestructive imaging was used to track single cells multiplying into small colonies and the volume changes over time in these colonies were used to measure their growth rates. Based on the results herein, bioimaging with WLI was demonstrated as a novel rapid bacterial culture assay with several advantageous capabilities. Fast nondestructive counting of colony-forming units in a culture and simultaneous measurement of bacterial growth rates and colony morphology with this method may be beneficial in research and clinical applications where current methods are either too slow or are destructive.


Assuntos
Bacillus thuringiensis/crescimento & desenvolvimento , Imageamento Tridimensional/métodos , Imagem Óptica/métodos , Pseudomonas fluorescens/crescimento & desenvolvimento , Contagem de Colônia Microbiana/métodos , Estudos de Viabilidade , Interferometria/métodos , Luz
16.
J Bacteriol ; 190(15): 5512-6, 2008 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-18502849

RESUMO

MtrC and OmcA are cell surface-exposed lipoproteins important for reducing solid metal oxides. Deletions of type II secretion system (T2SS) genes reduced their extracellular release and their accessibility to the proteinase K treatment, demonstrating the direct involvement of T2SS in translocation of MtrC and OmcA to the bacterial cell surface.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Citocromos/metabolismo , Proteínas de Membrana Transportadoras/metabolismo , Shewanella/metabolismo , Deleção de Genes , Proteínas de Membrana Transportadoras/genética , Shewanella/genética
17.
Environ Microbiol ; 10(1): 125-36, 2008 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-17888007

RESUMO

Pertechnetate, (99)Tc(VII)O(4)(-), is a highly mobile radionuclide contaminant at US Department of Energy sites that can be enzymatically reduced by a range of anaerobic and facultatively anaerobic microorganisms, including Shewanella oneidensis MR-1, to poorly soluble Tc(IV)O(2(s)). In other microorganisms, Tc(VII)O(4)(-) reduction is generally considered to be catalysed by hydrogenase. Here, we provide evidence that although the NiFe hydrogenase of MR-1 was involved in the H(2)-driven reduction of Tc(VII)O(4)(-)[presumably through a direct coupling of H(2) oxidation and Tc(VII) reduction], the deletion of both hydrogenase genes did not completely eliminate the ability of MR-1 to reduce Tc(VII). With lactate as the electron donor, mutants lacking the outer membrane c-type cytochromes MtrC and OmcA or the proteins required for the maturation of c-type cytochromes were defective in reducing Tc(VII) to nanoparticulate TcO(2) x nH(2)O((s)) relative to MR-1 or a NiFe hydrogenase mutant. In addition, reduced MtrC and OmcA were oxidized by Tc(VII)O(4)(-), confirming the capacity for direct electron transfer from these OMCs to TcO(4)(-). c-Type cytochrome-catalysed Tc(VII) reduction could be a potentially important mechanism in environments where organic electron donor concentrations are sufficient to allow this reaction to dominate.


Assuntos
Grupo dos Citocromos c/metabolismo , Hidrogenase/metabolismo , Proteínas Ferro-Enxofre/metabolismo , Shewanella/metabolismo , Pertecnetato Tc 99m de Sódio/metabolismo , Proteínas da Membrana Bacteriana Externa/química , Proteínas da Membrana Bacteriana Externa/metabolismo , Grupo dos Citocromos c/química , Grupo dos Citocromos c/genética , Transporte de Elétrons , Hidrogênio/metabolismo , Hidrogenase/química , Hidrogenase/genética , Proteínas Ferro-Enxofre/química , Proteínas Ferro-Enxofre/genética , Oxirredução , Óxidos/química , Óxidos/metabolismo , Shewanella/química , Shewanella/enzimologia , Shewanella/genética , Pertecnetato Tc 99m de Sódio/química , Vitamina K 2/química
18.
Appl Environ Microbiol ; 74(21): 6746-55, 2008 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-18791025

RESUMO

Because of their cell surface locations, the outer membrane c-type cytochromes MtrC and OmcA of Shewanella oneidensis MR-1 have been suggested to be the terminal reductases for a range of redox-reactive metals that form poorly soluble solids or that do not readily cross the outer membrane. In this work, we determined the kinetics of reduction of a series of Fe(III) complexes with citrate, nitrilotriacetic acid (NTA), and EDTA by MtrC and OmcA using a stopped-flow technique in combination with theoretical computation methods. Stopped-flow kinetic data showed that the reaction proceeded in two stages, a fast stage that was completed in less than 1 s, followed by a second, relatively slower stage. For a given complex, electron transfer by MtrC was faster than that by OmcA. For a given cytochrome, the reaction was completed in the order Fe-EDTA > Fe-NTA > Fe-citrate. The kinetic data could be modeled by two parallel second-order bimolecular redox reactions with second-order rate constants ranging from 0.872 microM(-1) s(-1) for the reaction between MtrC and the Fe-EDTA complex to 0.012 microM(-1) s(-1) for the reaction between OmcA and Fe-citrate. The biphasic reaction kinetics was attributed to redox potential differences among the heme groups or redox site heterogeneity within the cytochromes. The results of redox potential and reorganization energy calculations showed that the reaction rate was influenced mostly by the relatively large reorganization energy. The results demonstrate that ligand complexation plays an important role in microbial dissimilatory reduction and mineral transformation of iron, as well as other redox-sensitive metal species in nature.


Assuntos
Proteínas da Membrana Bacteriana Externa/metabolismo , Grupo dos Citocromos c/metabolismo , Compostos Férricos/metabolismo , Ácido Nitrilotriacético/análogos & derivados , Shewanella/metabolismo , Citocromos/metabolismo , Ácido Edético/metabolismo , Cinética , Ácido Nitrilotriacético/metabolismo
19.
Biomicrofluidics ; 9(3): 031101, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-26015837

RESUMO

A vacuum compatible microfluidic reactor, SALVI (System for Analysis at the Liquid Vacuum Interface), was employed for in situ chemical imaging of live biofilms using time-of-flight secondary ion mass spectrometry (ToF-SIMS). Depth profiling by sputtering materials in sequential layers resulted in live biofilm spatial chemical mapping. Two-dimensional (2D) images were reconstructed to report the first three-dimensional images of hydrated biofilm elucidating spatial and chemical heterogeneity. 2D image principal component analysis was conducted among biofilms at different locations in the microchannel. Our approach directly visualized spatial and chemical heterogeneity within the living biofilm by dynamic liquid ToF-SIMS.

20.
J Appl Ecol ; 52(3): 686-695, 2015 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-27642189

RESUMO

Biodiversity is changing at unprecedented rates, and it is increasingly important that these changes are quantified through monitoring programmes. Previous recommendations for developing or enhancing these programmes focus either on the end goals, that is the intended use of the data, or on how these goals are achieved, for example through volunteer involvement in citizen science, but not both. These recommendations are rarely prioritized.We used a collaborative approach, involving 52 experts in biodiversity monitoring in the UK, to develop a list of attributes of relevance to any biodiversity monitoring programme and to order these attributes by their priority. We also ranked the attributes according to their importance in monitoring biodiversity in the UK. Experts involved included data users, funders, programme organizers and participants in data collection. They covered expertise in a wide range of taxa.We developed a final list of 25 attributes of biodiversity monitoring schemes, ordered from the most elemental (those essential for monitoring schemes; e.g. articulate the objectives and gain sufficient participants) to the most aspirational (e.g. electronic data capture in the field, reporting change annually). This ordered list is a practical framework which can be used to support the development of monitoring programmes.People's ranking of attributes revealed a difference between those who considered attributes with benefits to end users to be most important (e.g. people from governmental organizations) and those who considered attributes with greatest benefit to participants to be most important (e.g. people involved with volunteer biological recording schemes). This reveals a distinction between focussing on aims and the pragmatism in achieving those aims. Synthesis and applications. The ordered list of attributes developed in this study will assist in prioritizing resources to develop biodiversity monitoring programmes (including citizen science). The potential conflict between end users of data and participants in data collection that we discovered should be addressed by involving the diversity of stakeholders at all stages of programme development. This will maximize the chance of successfully achieving the goals of biodiversity monitoring programmes.

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