RESUMO
Surfactant mixtures are used in a variety of personal care and cosmetic applications but are known to be harsh on the skin. The purpose of this study was to examine anionic surfactant penetration into human skin from nonideal surfactant mixtures under short-time exposure conditions that are relevant to realistic exposure scenarios. This was done by measuring the penetration of a radiolabeled probe (14C-SDS) into human cadaver skin in Franz diffusion cells in vitro from the mixtures of sodium dodecyl sulfate (SDS) and lauramidopropyl betaine (LAPB). Monomer and micelle concentrations in the SDS/LAPB/14C-SDS mixtures were predicted using a regular solution theory approximation. We confirmed that the mixtures of SDS and LAPB exhibit nonideal behavior with a net attraction between the two surfactants. Penetration of 14C-SDS into excised human skin from the mixtures of SDS and LAPB was found to decrease in a log-linear manner with increasing mole fraction of LAPB in the bulk solution (R2 = 0.97, p < 0.001). Additionally, the penetration of 14C-SDS into excised human skin from the mixtures of SDS and LAPB was found to correlate linearly and strongly with the predicted values of 14C-SDS monomer concentration in SDS/LAPB/14C-SDS mixtures (R2 = 0.95, p < 0.01). 14C-SDS penetration from the mixed surfactant composition could be quantitatively reconciled with that from an SDS-only composition by postulating a secondary, positive contribution from LAPB related to its own penetration and binding to skin components that increased SDS penetration at low concentrations. This research therefore supports a monomer penetration theory of surfactant penetration into the skin, combined with a measurable impact of favorable surfactant interactions within the tissue.
Assuntos
Betaína , Tensoativos , Betaína/metabolismo , Humanos , Pele/metabolismo , Absorção Cutânea , Dodecilsulfato de Sódio , Tensoativos/metabolismoRESUMO
Glucocorticoid hormone plays a major role in metabolism and disease. The hormone-bound glucocorticoid receptor (GR) binds to a specific set of enhancers in different cell types, resulting in unique patterns of gene expression. We have addressed the role of chromatin structure in GR binding by mapping nucleosome positions in mouse adenocarcinoma cells. Before hormone treatment, GR-enhancers exist in one of three chromatin states: (i) Nucleosome-depleted enhancers that are DNase I-hypersensitive, associated with the Brg1 chromatin remodeler and flanked by nucleosomes incorporating histone H2A.Z. (ii) Nucleosomal enhancers that are DNase I-hypersensitive, marked by H2A.Z and associated with Brg1. (iii) Nucleosomal enhancers that are inaccessible to DNase I, incorporate little or no H2A.Z and lack Brg1. Hormone-induced GR binding results in nucleosome shifts at all types of GR-enhancer, coinciding with increased recruitment of Brg1. We propose that nucleosome-depleted GR-enhancers are formed and maintained by other transcription factors which recruit Brg1 whereas, at nucleosomal enhancers, GR behaves like a pioneer factor, interacting with nucleosomal sites and recruiting Brg1 to remodel the chromatin.
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Cromatina/metabolismo , Elementos Facilitadores Genéticos , Nucleossomos/metabolismo , Receptores de Glucocorticoides/metabolismo , Animais , Linhagem Celular , Linhagem Celular Tumoral , Cromatina/efeitos dos fármacos , Cromatina/genética , Montagem e Desmontagem da Cromatina/efeitos dos fármacos , Montagem e Desmontagem da Cromatina/genética , DNA Helicases/genética , DNA Helicases/metabolismo , Dexametasona/metabolismo , Dexametasona/farmacologia , Glucocorticoides/metabolismo , Glucocorticoides/farmacologia , Histonas/genética , Histonas/metabolismo , Camundongos , Proteínas Nucleares/genética , Proteínas Nucleares/metabolismo , Nucleossomos/efeitos dos fármacos , Nucleossomos/genética , Ligação Proteica/efeitos dos fármacos , Receptores de Glucocorticoides/genética , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Ativação Transcricional/efeitos dos fármacosRESUMO
The National Cancer Institute (NCI) of National Institutes of Health has funded and operated the NCI Alliance for Nanotechnology in Cancer - a large multi-disciplinary program which leverages research at the intersection of molecular biology, oncology, physics, chemistry, and engineering to develop innovative cancer interventions. The program has demonstrated that convergence of several scientific disciplines catalyzes innovation and progress in cancer nanotechnology and advances its clinical translation. This paper takes a look at last thirteen years of the Alliance program operations and delineates its outcomes, successes, and outlook for the future.
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Nanomedicina , National Cancer Institute (U.S.) , Neoplasias , Pesquisa Translacional Biomédica , Humanos , Disseminação de Informação , Estados UnidosRESUMO
OBJECTIVE: Once penetrated into the stratum corneum, anionic surfactants bind to and denature stratum corneum proteins as well as intercalate into and extract intercellular lipids. With repeated exposures, this leads to skin dryness and irritation, compromising barrier function and skin health. The mechanisms of anionic surfactant penetration into the skin, however, are still widely debated. The objective of this study was to evaluate current theories of surfactant penetration into human skin. METHODS: A test set comprising 15 anionic surfactant systems and one non-ionic surfactant, all having either dodecyl or lauryl alkyl chains, was tested for surfactant penetration into split-thickness human cadaver skin in vitro using radiolabelled sodium dodecyl sulphate (14 C-SDS). Select physical properties of these formulations thought to be associated with skin penetration including critical micelle concentration, micelle diameter, filtrate concentration and zeta potential were also measured. RESULTS: 14 C-SDS penetration into human cadaver skin from surfactant systems in vitro was found to correlate well with CMC (R2 = 0.34, P < 0.05), filtrate concentration (R2 = 0.36, P < 0.05) and zeta potential (R2 = 0.76, P < 0.001), but poorly with micelle diameter (R2 = 0.12). Furthermore, the latter measure correlated inversely with penetration compared to what would be expected based on the micelle penetration theory. CONCLUSION: Neither monomer nor micelle penetration theories are sufficient to explain anionic surfactant penetration into human skin. Submicellar (or premicellar) aggregate penetration theory is difficult to defend at relevant surfactant concentrations. We propose a new hypothesis for this mechanism in which short-term penetration is based on monomer concentration and longer term penetration is based on surfactant-induced damage to the skin barrier.
OBJECTIF: Une fois pénétrés dans la couche cornée, les tensioactifs anioniques se lient aux protéines de la couche cornée, le dénaturent, s'intercalent dans les lipides intercellulaires et les extraient. Avec des expositions répétées, ceci entraîne un assèchement et une irritation de la peau, compromettant ainsi la fonction de barrière et la santé de la peau. Les mécanismes de pénétration du tensioactif anionique dans la peau restent toutefois largement débattus. L'objectif de cette étude est d'évaluer les théories actuelles de la pénétration de surfactant dans la peau humaine. MÉTHODES: Un ensemble de contrôle comprenant 15 systèmes de tensioactifs anioniques et un tensioactif non ionique, tous possédant des chaînes dodécyles ou lauryle alkyles, a été testé vis-à-vis de la pénétration du tensioactif dans la peau d'un cadavre humain partiellement épaisse in vitro en utilisant du sulfate de sodium dodécyl radiomarqué (14 C-SDS). Certaines propriétés physiques de ces formulations supposées être associées à la pénétration dans la peau, notamment la concentration critique micellaires, le diamètre des micelles, la concentration de filtrat, et le potentiel zêta, ont également été mesurées. RÉSULTATS: La pénétration du 14 C-SDS dans la peau de cadavre humain provenant de systèmes de tensioactifs in vitro était bien corrélée avec la CMC (R2 = 0,34, P < 0,05), la concentration de filtrat (R2 = 0,36, P < 0,05) et le potentiel zêta (R2 = 0,76, P < 0,001), mais faiblement avec un diamètre de micelle (R2 = 0,12). De plus, cette dernière mesure était inversement corrélée à la pénétration par rapport à ce que l'on pouvait attendre de la théorie de la pénétration des micelles. CONCLUSION: Ni les théories de pénétration de monomères ni de micelles ne sont suffisantes pour expliquer la pénétration de tensioactif anionique dans la peau humaine. La théorie de la pénétration des agrégats submicellaires (ou prémicellaires) est difficile à défendre aux concentrations pertinentes de surfactant. Nous proposons une nouvelle hypothèse pour ce mécanisme dans laquelle la pénétration à court terme est basée sur la concentration en monomères et la pénétration à plus long terme est basée sur les dommages à la barrière cutanée induits par les tensioactifs.
Assuntos
Ânions/química , Micelas , Absorção Cutânea , Pele/metabolismo , Tensoativos/farmacocinética , Radioisótopos de Carbono/farmacocinética , Humanos , Dodecilsulfato de Sódio/farmacocinética , Tensoativos/químicaRESUMO
Numerous tests have been developed to estimate a surfactant's mildness in rinse-off formulations. In this study, mixed surfactant systems were examined for their impact on surfactant penetration into the skin and skin hydration using in vivo and ex vivo methods. A forearm controlled application test (FCAT) was conducted, and skin hydration was evaluated using corneometry and visual dryness grading. Tape strip and cup scrub extractions were completed within the FCAT to examine the penetration of five individual surfactants into the skin in vivo. The ratio of surfactant mass extracted by five pooled tape strips to surfactant mass extracted by cup scrubs was found to be in the range of 40-59%. Furthermore, cup scrub collection and analysis was less time-consuming and less expensive to conduct than tape stripping. Thus, we recommend cup scrub extraction as a suitable substitute for tape stripping in future surfactant skin penetration analyses. In vivo results were compared with ex vivo 14C-sodium dodecyl sulfate (14C-SDS) penetration into human cadaver skin from the same surfactant systems. In vivo measurements conducted in the FCAT, including corneometer reading, visual dryness score, and individual surfactant (sodium laureth (1) ether sulfate and cocamidopropyl betaine) extracted from the skin, were found to correlate well with 14C-SDS penetration into the skin ex vivo for anion-based surfactant systems. Thus, 14C-SDS skin penetration may be a useful preclinical test for skin dryness induced by rinse-off products containing anionic surfactants.
Assuntos
Pele , Humanos , Absorção Cutânea , Dodecilsulfato de Sódio , TensoativosRESUMO
Despite significant efforts toward research and treatment development, cancer continues to be a major health problem in the United States that is only further enhanced by the heterogeneous nature of the disease. Nanotechnology has evolved as a technology with applications to medicine and the potential to improve clinical outcomes, with its application to cancer garnering much attention recently. In particular, through the generation of novel nanoscale devices and therapeutic platforms, nanotechnologies have emerged as innovative approaches that enable the detection and diagnosis of cancer at its earliest stages, and the delivery of anticancer drugs directly to tumors. This article highlights recent advances in the development of nanotechnologies for cancer therapeutics and diagnostics, and focuses on the potential future of cancer nanotechnology and the challenges this young field faces as it continues to move toward clinical translation.
Assuntos
Nanotecnologia , Neoplasias/diagnóstico , Neoplasias/tratamento farmacológico , Sistemas de Liberação de Medicamentos , Humanos , Nanoestruturas/uso terapêutico , Neoplasias/patologiaRESUMO
The adolescent hippocampus is highly vulnerable to alcohol-induced damage, which could contribute to their increased susceptibility to alcohol use disorder. Altered adult hippocampal neurogenesis represents one potential mechanism by which alcohol (ethanol) affects hippocampal function. Based on the vulnerability of the adolescent hippocampus to alcohol-induced damage, and prior reports of long-term alcohol-induced effects on adult neurogenesis, we predicted adverse effects on adult neurogenesis in the adolescent brain following abstinence from alcohol dependence. Thus, we examined neurogenesis in adolescent male rats during abstinence following a 4-day binge model of alcohol dependence. Bromodeoxyuridine and Ki67 immunohistochemistry revealed a 2.2-fold increase in subgranular zone cell proliferation after 7 days of abstinence. Increased proliferation was followed by a 75% increase in doublecortin expression and a 56% increase in surviving bromodeoxyuridine-labeled cells 14 and 35 days post-ethanol exposure, respectively. The majority of newborn cells in ethanol and control groups co-localized with NeuN, indicating a neuronal phenotype and therefore a 1.6-fold increase in hippocampal neurogenesis during abstinence. Although these results mirror the magnitude of reactive neurogenesis described in adult rat studies, ectopic bromodeoxyuridine and doublecortin positive cells were detected in the molecular layer and hilus of adolescent rats displaying severe withdrawal symptoms, an effect that has not been described in adults. The presence of ectopic neuroblasts suggests that a potential defect exists in the functional incorporation of new neurons into the existing hippocampal circuitry for a subset of rats. Age-related differences in functional incorporation could contribute to the increased vulnerability of the adolescent hippocampus to ethanol.
Assuntos
Alcoolismo/fisiopatologia , Depressores do Sistema Nervoso Central/farmacologia , Etanol/farmacologia , Hipocampo/efeitos dos fármacos , Neurogênese/efeitos dos fármacos , Síndrome de Abstinência a Substâncias/fisiopatologia , Animais , Modelos Animais de Doenças , Proteína Duplacortina , Ensaio de Imunoadsorção Enzimática/métodos , Humanos , Masculino , Ratos , Ratos Sprague-DawleyRESUMO
Accumulating evidence indicates that the adolescent hippocampus is highly susceptible to alcohol-induced structural damage and behavioral deficits. Microglia are vitally important brain constituents needed to support and maintain proper neural function; however, alcohol's effects on microglia have only recently gained attention. The microglial response to alcohol during adolescence has yet to be studied; therefore, we examined hippocampal microglial activation in an adolescence binge alcohol exposure model. Adolescent male Sprague-Dawley rats were administered ethanol 3 times/day for 4 days and were sacrificed 2, 7, and 30 days later. Bromo-deoxy-Uridine was injected 2 days after ethanol exposure to label dividing cells. Microglia morphology was scored using the microglia marker Iba-1, while the extent of microglial activation was examined with ED-1, major histocompatibility complex-II (MHC-II), and tumor necrosis factor (TNF)-α expression. Ethanol induced significant morphological change in hippocampal microglia, consistent with activation. In addition, ethanol increased the number of BrdU+ cells throughout all regions of the hippocampus 2 days after the last dose. Confocal microscopy showed that the proliferating BrdU+ cells in each region were Iba-1+ microglia. Importantly, newly born microglia survived and retained their morphological characteristics 30 days after ethanol exposure. Ethanol did not alter hippocampal ED-1, MHC-II, or TNF-α expression, suggesting that a single period of binge ethanol exposure does not induce a full microglial-driven neuroinflammatory response. These results establish that ethanol triggers partial microglial activation in the adolescent hippocampus that persists through early adulthood, suggesting that alcohol exposure during this unique developmental time period has long-lasting consequences.
Assuntos
Consumo de Bebidas Alcoólicas/imunologia , Etanol/administração & dosagem , Hipocampo/efeitos dos fármacos , Microglia/efeitos dos fármacos , Animais , Forma Celular/efeitos dos fármacos , Ensaio de Imunoadsorção Enzimática , Hipocampo/imunologia , Hipocampo/metabolismo , Imuno-Histoquímica , Masculino , Microglia/imunologia , Microglia/metabolismo , Ratos , Ratos Sprague-Dawley , Fator de Necrose Tumoral alfa/metabolismoRESUMO
Endometriosis is a debilitating disease that affects about 10% of reproductive-aged adolescents and women. The etiology of the disease is unknown; however, a prevailing hypothesis is that endometriosis develops from retrograde menstruation, where endometrial tissue and fluids flow back through the oviducts into the peritoneal cavity. There is no cure for endometriosis, and symptoms are treated palliatively. Despite the advances in knowledge, the complexity of endometriosis etiology is still unknown. Recent work by our group suggests that the initiation of endometriosis is immune-dependent. Using a mouse model of endometriosis, we hypothesized the initiation of endometriosis is immune regulated and uterine endometrium specific. In the absence of a functional immune system non-obese diabetic/severe combined immunodeficiency (NOD/SCID mice), endometriotic lesions did not form. Uterine endometrial tissue forms endometriotic lesions, whereas tissues with differing basal expression levels of estrogen receptor alpha (ESR1) and estrogen receptor beta (ESR2), similar cellular composition to uterus (i.e. bladder, mammary gland, and lung), and treated with estradiol did not form lesions. As MMP7 is known to play a major role in the organization/reorganization of the endometrium during the menstrual cycle, blocking metalloproteinase (MMP) activity significantly decreased the invasive properties of these cells. Together, these findings suggest that endometriosis is immune and uterine specific and that MMP7 likely plays a role in the ability of uterine tissue and the innate immune system to establish and maintain endometriotic lesions.
RESUMO
The purpose of this study was to examine the effect of prolonged surfactant exposure on mechanisms of anionic surfactant penetration into human skin. A radiolabeled probe (14-carbon sodium dodecyl sulfate (14C-SDS)) was used to trace the penetration of a model anionic surfactant, sodium dodecyl sulfate (SDS), into excised human skin and into an inert membrane composite in vitro. SDS dose varied from 0.03 to 15 mg/cm2, mimicking the exposure of a rinse-off cleanser on skin. Two surfactant exposure lengths were tested, 2 min and 5 h. SDS penetration into excised human skin was constant from 50 to 600 mM for skin samples exposed to SDS for 2 min. For skin samples exposed to SDS for 5 h, SDS penetration into skin increased log-linearly with increasing SDS concentration. SDS penetration into the inert membrane composite was constant from 50 to 600 mM SDS regardless of length of surfactant exposure. Penetration of the radiolabeled probe into skin and into the inert membrane correlated well with the monomeric concentration of the radiolabeled probe in the applied surfactant solution. These results support that monomer concentration is the driving force for initial SDS penetration into upper layers of the stratum corneum over a wide range of concentrations. With prolonged exposure, SDS penetrates the skin in a dose-dependent manner due to surfactant-induced damage to the skin.
Assuntos
Pele/efeitos dos fármacos , Dodecilsulfato de Sódio/efeitos adversos , Radioisótopos de Carbono , Relação Dose-Resposta a Droga , Humanos , Pele/metabolismo , Absorção Cutânea , Dodecilsulfato de Sódio/farmacocinéticaRESUMO
Adolescents diagnosed with an alcohol use disorder show neurodegeneration in the hippocampus, a region important for learning, memory, and mood regulation. This study examines a potential mechanism by which excessive alcohol intake, characteristic of an alcohol use disorder, produces neurodegeneration. As hippocampal neural stem cells underlie ongoing neurogenesis, a phenomenon that contributes to hippocampal structure and function, we investigated aspects of cell death and cell birth in an adolescent rat model of an alcohol use disorder. Immunohistochemistry of various markers along with Bromo-deoxy-Uridine (BrdU) injections were used to examine different aspects of neurogenesis. After 4 days of binge alcohol exposure, neurogenesis was decreased by 33 and 28% at 0 and 2 days after the last dose according to doublecortin expression. To determine whether this decrease in neurogenesis was due to effects on neural stem cell proliferation, quantification of BrdU-labeled cells revealed a 21% decrease in the dentate gyrus of alcohol-exposed brains. Cell survival and phenotype of BrdU-labeled cells were assessed 28 days after alcohol exposure and revealed a significant, 50% decrease in the number of surviving cells in the alcohol-exposed group. Reduced survival was supported by significant increases in the number of pyknotic-, FluoroJade B positive-, and TUNEL-positive cells. However, so few cells were TUNEL-positive that cell death is likely necrotic in this model. Although alcohol decreased the number of newborn cells, it did not affect the percentage of cells that matured into neurons (differentiation). Thus, our data support that in a model of an adolescent alcohol use disorder, neurogenesis is impaired by two mechanisms: alcohol-inhibition of neural stem cell proliferation and alcohol effects on new cell survival. Remarkably, alcohol inhibition of neurogenesis may outweigh the few dying cells per section, which implies that alcohol inhibition of neurogenesis contributes to hippocampal neurodegeneration in alcohol use disorders.
Assuntos
Alcoolismo/patologia , Depressores do Sistema Nervoso Central/farmacologia , Etanol/farmacologia , Hipocampo/fisiopatologia , Neurogênese/efeitos dos fármacos , Análise de Variância , Animais , Animais Recém-Nascidos , Bromodesoxiuridina/metabolismo , Morte Celular/efeitos dos fármacos , Proliferação de Células/efeitos dos fármacos , Modelos Animais de Doenças , Relação Dose-Resposta a Droga , Proteínas do Domínio Duplacortina , Proteína Duplacortina , Fluoresceínas , Hipocampo/efeitos dos fármacos , Hipocampo/patologia , Marcação In Situ das Extremidades Cortadas/métodos , Masculino , Proteínas Associadas aos Microtúbulos/metabolismo , Proteínas do Tecido Nervoso/metabolismo , Neurogênese/fisiologia , Neuropeptídeos/metabolismo , Compostos Orgânicos , Ratos , Ratos Sprague-Dawley , Fatores de TempoRESUMO
Anionic surfactants compromise skin's barrier function by damaging stratum corneum lipids and proteins. The objective of this study was to examine anionic surfactant-induced changes in the skin's polar and transcellular pathways and the resulting impact on surfactant penetration into the skin. Three anionic surfactant formulations and one control formulation were each applied to split-thickness human cadaver skin in vitro for 24 h. Electrical conductivity of the skin, determined using a four-terminal resistance method, and water permeation across the skin, determined using a radiolabeled water tracer, were simultaneously measured at several points over the experimental period. Surfactant permeation across the skin was similarly measured using a radiolabeled sodium dodecyl sulfate tracer. Anionic surfactants rapidly enhanced skin electrical conductivity and water permeability in the excised human skin, resulting in nonlinear enhancements in surfactant permeation across the skin over time. Surfactant penetration into the skin was found to increase linearly with increasing surfactant monomer concentration. Surfactant zeta potential was found to correlate well with skin conductivity, water permeation across the skin, and surfactant permeation across the skin, particularly with long surfactant exposures. Micelle charge is a significant predictor of anionic surfactant-induced damage to the human skin, with more highly charged surfactants inducing the most damage.
Assuntos
Permeabilidade/efeitos dos fármacos , Pele/metabolismo , Tensoativos/administração & dosagem , Tensoativos/química , Condutividade Elétrica , Humanos , Micelas , Absorção Cutânea/efeitos dos fármacos , Dodecilsulfato de Sódio/administração & dosagem , Dodecilsulfato de Sódio/química , Água/químicaRESUMO
Nanotechnology offers an exceptional and unique opportunity for developing a new generation of tools addressing persistent challenges to progress in cancer research and clinical care. The National Cancer Institute (NCI) recognizes this potential, which is why it invests roughly $150 M per year in nanobiotechnology training, research and development. By exploiting the various capacities of nanomaterials, the range of nanoscale vectors and probes potentially available suggests much is possible for precisely investigating, manipulating, and targeting the mechanisms of cancer across the full spectrum of research and clinical care. NCI has played a key role among federal R&D agencies in recognizing early the value of nanobiotechnology in medicine and committing to its development as well as providing training support for new investigators in the field. These investments have allowed many in the research community to pursue breakthrough capabilities that have already yielded broad benefits. Presented here is an overview of how NCI has made these investments with some consideration of how it will continue to work with this research community to pursue paradigm-changing innovations that offer relief from the burdens of cancer.
Assuntos
Pesquisa Biomédica/economia , Financiamento Governamental/economia , Investimentos em Saúde/economia , Nanomedicina/economia , National Cancer Institute (U.S.)/economia , Pesquisa Biomédica/tendências , Financiamento Governamental/tendências , Previsões , Investimentos em Saúde/tendências , Nanomedicina/tendências , National Cancer Institute (U.S.)/tendências , Estados UnidosRESUMO
The cancer Nanotechnology Laboratory (caNanoLab) data portal is an online nanomaterial database that allows users to submit and retrieve information on well-characterized nanomaterials, including composition, in vitro and in vivo experimental characterizations, experimental protocols, and related publications. Initiated in 2006, caNanoLab serves as an established resource with an infrastructure supporting the structured collection of nanotechnology data to address the needs of the cancer biomedical and nanotechnology communities. The portal contains over 1,000 curated nanomaterial data records that are publicly accessible for review, comparison, and re-use, with the ultimate goal of accelerating the translation of nanotechnology-based cancer therapeutics, diagnostics, and imaging agents to the clinic. In this paper, we will discuss challenges associated with developing a nanomaterial database and recognized needs for nanotechnology data curation and sharing in the biomedical research community. We will also describe the latest version of caNanoLab, caNanoLab 2.0, which includes enhancements and new features to improve usability such as personalized views of data and enhanced search and navigation.
RESUMO
There is a critical opportunity in the field of nanoscience to compare and integrate information across diverse fields of study through informatics (i.e., nanoinformatics). This paper is one in a series of articles on the data curation process in nanoinformatics (nanocuration). Other articles in this series discuss key aspects of nanocuration (temporal metadata, data completeness, database integration), while the focus of this article is on the nanocuration workflow, or the process of identifying, inputting, and reviewing nanomaterial data in a data repository. In particular, the article discusses: 1) the rationale and importance of a defined workflow in nanocuration, 2) the influence of organizational goals or purpose on the workflow, 3) established workflow practices in other fields, 4) current workflow practices in nanocuration, 5) key challenges for workflows in emerging fields like nanomaterials, 6) examples to make these challenges more tangible, and 7) recommendations to address the identified challenges. Throughout the article, there is an emphasis on illustrating key concepts and current practices in the field. Data on current practices in the field are from a group of stakeholders active in nanocuration. In general, the development of workflows for nanocuration is nascent, with few individuals formally trained in data curation or utilizing available nanocuration resources (e.g., ISA-TAB-Nano). Additional emphasis on the potential benefits of cultivating nanomaterial data via nanocuration processes (e.g., capability to analyze data from across research groups) and providing nanocuration resources (e.g., training) will likely prove crucial for the wider application of nanocuration workflows in the scientific community.
RESUMO
Recent advances in cancer biology and the development of new research tools have enabled interrogations of single cells and cell-cell interactions. Emerging technologies are capable of revealing data on the physical characteristics of cells, differences in the genome and proteome between cancerous and healthy cells, and variations in distinct cell subpopulations. Dynamic measurements enable studies that can reveal the evolution of cell characteristics. Cells can also be assembled in vitro or ex vivo into two- and three-dimensional cell environments, allowing for studies of cell-cell interactions and cell signaling. The Memorial Sloan Kettering Cancer Center, in collaboration with the Breast Cancer Research Foundation and the National Cancer Institute, co-organized a workshop as an opportunity for leading researchers in their respective fields to present and discuss scientific research highlights relevant to the utilization of techniques and technologies for studying cell-to-cell communications in cancer. Avenues of future development and the potential for clinical utility were primary features of these discussions. The scientific presentations and extensive ensuing discussions resulted in the identification of a number of research opportunities, which are summarized in this report.
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ATP-dependent chromatin remodeling is an essential process required for the dynamic organization of chromatin structure. Here we describe the genome-wide location and activity of three remodeler proteins with diverse physiological functions in the mouse genome: Brg1, Chd4 and Snf2h. The localization patterns of all three proteins substantially overlap with one another and with regions of accessible chromatin. Furthermore, using inducible mutant variants, we demonstrate that the catalytic activity of these proteins contributes to the remodeling of chromatin genome wide and that each of these remodelers can independently regulate chromatin reorganization at distinct sites. Many regions require the activity of more than one remodeler to regulate accessibility. These findings provide a dynamic view of chromatin organization and highlight the differential contributions of remodelers to chromatin maintenance in higher eukaryotes.
Assuntos
Montagem e Desmontagem da Cromatina , Genoma , Animais , Sítios de Ligação , CamundongosRESUMO
The glucocorticoid receptor regulates transcriptional output through complex interactions with the genome. These events require continuous remodeling of chromatin, interactions of the glucocorticoid receptor with chaperones and other accessory factors, and recycling of the receptor by the proteasome. Therefore, the cohort of factors expressed in a particular cell type can determine the physiological outcome upon treatment with glucocorticoid hormones. In addition, circadian and ultradian cycling of hormones can also affect GR response. Here we will discuss revision of the classical static model of GR binding to response elements to incorporate recent findings from single cell and genome-wide analyses of GR regulation. We will highlight how these studies have changed our views on the dynamics of GR recruitment and its modulation of gene expression.
Assuntos
Glucocorticoides/fisiologia , Receptores de Glucocorticoides/fisiologia , Ativação Transcricional , Animais , Montagem e Desmontagem da Cromatina , Relógios Circadianos , Genoma Humano , Humanos , Conformação de Ácido Nucleico , Ligação Proteica , Elementos de RespostaRESUMO
The use of nanotechnology in biomedicine involves the engineering of nanomaterials to act as therapeutic carriers, targeting agents and diagnostic imaging devices. The application of nanotechnology in cancer aims to transform early detection, targeted therapeutics and cancer prevention and control. To assist in expediting and validating the use of nanomaterials in biomedicine, the National Cancer Institute (NCI) Center for Biomedical Informatics and Information Technology, in collaboration with the NCI Alliance for Nanotechnology in Cancer (Alliance), has developed a data sharing portal called caNanoLab. caNanoLab provides access to experimental and literature curated data from the NCI Nanotechnology Characterization Laboratory, the Alliance and the greater cancer nanotechnology community.
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Binge alcohol exposure in adolescent rats potently inhibits adult hippocampal neurogenesis by altering neural progenitor cell (NPC) proliferation and survival; however, it is not clear whether alcohol results in an increase or decrease in net proliferation. Thus, the effects of alcohol on hippocampal NPC cell cycle phase distribution and kinetics were assessed in an adolescent rat model of an alcohol use disorder. Cell cycle distribution was measured using a combination of markers (Ki-67, bromodeoxyuridine incorporation, and phosphohistone H3) to determine the proportion of NPCs within G1, S, and G2/M phases of the cell cycle. Cell cycle kinetics were calculated using a cumulative bromodeoxyuridine injection protocol to determine the effect of alcohol on cell cycle length and S-phase duration. Binge alcohol exposure reduced the proportion of NPCs in S-phase, but had no effect on G1 or G2/M phases, indicating that alcohol specifically targets S-phase of the cell cycle. Cell cycle kinetics studies revealed that alcohol reduced NPC cell cycle duration by 36% and shortened S-phase by 62%, suggesting that binge alcohol exposure accelerates progression through the cell cycle. This effect would be expected to increase NPC proliferation, which was supported by a slight, but significant increase in the number of Sox-2+ NPCs residing in the hippocampal subgranular zone following binge alcohol exposure. These studies suggest the mechanism of alcohol inhibition of neurogenesis and also reveal the earliest evidence of the compensatory neurogenesis reaction that has been observed a week after binge alcohol exposure.