Microplastics in freshwater wild and farmed fish species of Bangladesh.

In today's world, microplastic contamination of aquatic systems is a subject of major concern. In this study, the incidence of microplastics in freshwater fish from both farmed and wild sources was evaluated. Wild catla (Gibelion catla), stinging catfish (Heteropneustes fossilis), rui (Labeo rohita), tengara catfish (Mystus tengara), and pabdah catfish (Ompok pabda) were collected from Padma River, Turag River, and Bhairab River. Farmed fishes of same species were collected from Mymensingh and Chandpur fish markets. A total of 68 (43.6%) microparticles out of 156 were identified as microplastics using ATR-FTIR. About 66.67% (20 out of 30) of farmed fish samples had microplastics in their digestive system, while 88.4% (23 of 26) of wild fish samples presented microplastics. There was a significant difference (p < 0.05) in average microplastic count between wild and farmed fish. Average microplastic count also showed a significant difference among five fish species (p < 0.01). A variety of polymers were observed, with polyethylene being the most abundant, followed by polyester, polypropylene, polyamide-6, and polyurethane. This study suggests that microplastic contamination is ubiquitous and contamination is common in all of the fish species investigated, independent of their origin (wild or farmed). However, wild fish population is at a greater risk of ingesting microplastics. This study, for the first time ever, reports plastic pollution in freshwater fishes of Bangladesh from wild and farmed sources.

Role of zooplankton diversity in Vibrio cholerae population dynamics and in the incidence of cholera in the Bangladesh Sundarbans.

Vibrio cholerae, a bacterium autochthonous to the aquatic environment, is the causative agent of cholera, a severe watery, life-threatening diarrheal disease occurring predominantly in developing countries. V. cholerae, including both serogroups O1 and O139, is found in association with crustacean zooplankton, mainly copepods, and notably in ponds, rivers, and estuarine systems globally. The incidence of cholera and occurrence of pathogenic V. cholerae strains with zooplankton were studied in two areas of Bangladesh: Bakerganj and Mathbaria. Chitinous zooplankton communities of several bodies of water were analyzed in order to understand the interaction of the zooplankton population composition with the population dynamics of pathogenic V. cholerae and incidence of cholera. Two dominant zooplankton groups were found to be consistently associated with detection of V. cholerae and/or occurrence of cholera cases, namely, rotifers and cladocerans, in addition to copepods. Local differences indicate there are subtle ecological factors that can influence interactions between V. cholerae, its plankton hosts, and the incidence of cholera.

Genome of Tenualosa ilisha from the river Padma, Bangladesh.

OBJECTIVE: Hilsa shad (Tenualosa ilisha), is a popular fish of Bangladesh belonging to the Clupeidae family. An anadromous species, like the salmon and many other migratory fish, it is a unique species that lives in the sea and travels to freshwater rivers for spawning. During its entire life, Tenualosa ilisha migrates both from sea to freshwater and vice versa. DATA DESCRIPTION: The genome of Tenualosa ilisha collected from the river Padma of Rajshahi, Bangladesh has been sequenced and its de novo hybrid assembly and structural annotations are being reported here. Illumina and PacBio sequencing platforms were used for high depth sequencing and the draft genome assembly was found to be 816 MB with N50 size of 188 kb. MAKER gene annotation tool predicted 31,254 gene models. Benchmarking Universal Single-Copy Orthologs refer 95% completeness of the assembled genome.

Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission.

Seasonal plankton blooms correlate with occurrence of cholera in Bangladesh, although the mechanism of how dormant Vibrio cholerae, enduring interepidemic period in biofilms and plankton, initiates seasonal cholera is not fully understood. In this study, laboratory microcosms prepared with estuarine Mathbaria water (MW) samples supported active growth of toxigenic V. cholerae O1 up to 7 weeks as opposed to 6 months when microcosms were supplemented with dehydrated shrimp chitin chips (CC) as the single source of nutrient. Bacterial counting and detection of wbe and ctxA genes were done employing culture, direct fluorescent antibody (DFA) assay, and multiplex-polymerase chain reaction methods. In MW microcosm, the aqueous phase became clear as the non-culturable cells settled, whereas the aqueous phase of the MW-CC microcosm became turbid from bacterial growth stimulated by chitin. Bacterial chitin degradation and biofilm formation proceeded from an initial steady state to a gradually declining bacterial culturable count. V. cholerae within the microenvironments of chitin and chitin-associated biofilms remained metabolically active even in a high acidic environment without losing either viability or virulence. It is concluded that the abundance of chitin that occurs during blooms plays an important role in the aquatic life cycle of V. cholerae and, ultimately, in the seasonal transmission of cholera.