Immobilization of proteins on carboxylic acid functionalized nanopatterns.

The immobilization of proteins on nanopatterned surfaces was investigated using in situ atomic force microscopy (AFM) and ex situ infrared reflectance-absorption spectroscopy (IRAS). The AFM-based lithography technique of nanografting provided control of the size, geometry, and spatial placement of nanopatterns within self-assembled monolayers (SAMs). Square nanopatterns of carboxylate-terminated SAMs were inscribed within methyl-terminated octadecanethiolate SAMs and activated using carbodiimide/succinimide coupling chemistry. Staphylococcal protein A was immobilized on the activated nanopatterns before exposure to rabbit immunoglobulin G. In situ AFM was used to monitor changes in the topography and friction of the nanopatterns in solution upon protein immobilization. Complementary studies with ex situ IRAS confirmed the surface chemistry that occurred during the steps of SAM activation and subsequent protein immobilization on unpatterned samples. Since carbodiimide/succinimide coupling chemistry can be used for surface attachment of different biomolecules, this protocol shows promise for development of other aqueous-based studies for nanopatterned protein immobilization.

Applying AFM-based nanofabrication for measuring the thickness of nanopatterns: the role of head groups in the vertical self-assembly of omega-functionalized n-alkanethiols.

Molecules of n-alkanethiols with methyl head groups typically form well-ordered monolayers during solution self-assembly for a wide range of experimental conditions. However, we have consistently observed that, for either carboxylic acid or thiol-terminated n-alkanethiols, under certain conditions nanografted patterns are generated with a thickness corresponding precisely to a double layer. To investigate the role of head groups for solution self-assembly, designed patterns of omega-functionalized n-alkanethiols were nanografted with systematic changes in concentration. Nanografting is an in situ approach for writing patterns of thiolated molecules on gold surfaces by scanning with an AFM tip under high force, accomplished in dilute solutions of desired ink molecules. As the tip is scanned across the surface of a self-assembled monolayer under force, the matrix molecules are displaced from the surface and are immediately replaced with fresh molecules from solution to generate nanopatterns. In this report, side-by-side comparison of nanografted patterns is achieved for different matrix molecules using AFM images. The chain length and head groups (i.e., carboxyl, hydroxyl, methyl, thiol) were varied for the nanopatterns and matrix monolayers. Interactions such as head-to-head dimerization affect the vertical self-assembly of omega-functionalized n-alkanethiol molecules within nanografted patterns. At certain threshold concentrations, double layers were observed to form when nanografting with head groups of carboxylic acid and dithiols, whereas single layers were generated exclusively for nanografted patterns with methyl and hydroxyl groups, regardless of changes in concentration.

Electrochemical and thermal grafting of alkyl grignard reagents onto (100) silicon surfaces.

Passivation of (100) silicon surfaces using alkyl Grignard reagents is explored via electrochemical and thermal grafting methods. The electrochemical behavior of silicon in methyl or ethyl Grignard reagents in tetrahydrofuran is investigated using cyclic voltammetry. Surface morphology and chemistry are investigated using atomic force microscopy, Fourier transform infrared spectroscopy, and X-ray photoelectron spectroscopy (XPS). Results show that electrochemical pathways provide an efficient and more uniform passivation method relative to thermal methods, and XPS results demonstrate that electrografted terminations are effective at limiting native oxide formation for more than 55 days in ambient conditions. A two-electron per silicon mechanism is proposed for electrografting a single (1:1) alkyl group per (100) silicon atom. The mechanism includes oxidation of two Grignard species and subsequent hydrogen abstraction and alkylation reaction resulting in a covalent attachment of alkyl groups with silicon.

Investigation of the magnetic properties of ferritin by AFM imaging with magnetic sample modulation.

Individual ferritin molecules can be sensitively detected using magnetic sample modulation (MSM) combined with contact mode atomic force microscopy (AFM). To generate an oscillating magnetic field, an alternating current (AC) was applied to a solenoid placed within the base of the AFM sample stage. When a modulated electromagnetic field is applied to samples, ferromagnetic and paramagnetic nanomaterials are induced to vibrate. The flux of the AC electromagnetic field causes the ferritin samples to vibrate with corresponding rhythm and periodicity of the applied field. This motion can be detected and mapped using contact mode AFM with a soft, nonmagnetic cantilever. Changes in the phase and amplitude of the periodic motion of the sample are sensed by the tip to selectively map vibrating magnetic nanomaterials. Particle lithography was used to create nanopatterned test platforms of ferritin for MSM measurements. Regularly spaced structures of proteins provide precise reproducible dimensions for multiple successive surface measurements at dimensions of tens of nanometers.

Achieving precision and reproducibility for writing patterns of n-alkanethiol self-assembled monolayers with automated nanografting.

Nanografting is a high-precision approach for scanning probe lithography, which provides unique advantages and capabilities for rapidly writing arrays of nanopatterns of thiol self-assembled monolayers (SAMs). Nanografting is accomplished by force- induced displacement of molecules of a matrix SAM, followed immediately by the self-assembly of n-alkanethiol ink molecules from solution. The feedback loop used to control the atomic force microscope tip position and displacement enables exquisite control of forces applied to the surface, ranging from pico to nanonewtons. To achieve high-resolution writing at the nanoscale, the writing speed, direction, and applied force need to be optimized. There are strategies for programing the tip translation, which will improve the uniformity, alignment, and geometries of nanopatterns written using open-loop feedback control. This article addresses the mechanics of automated nanografting and demonstrates results for various writing strategies when nanografting patterns of n-alkanethiol SAMs.

Studies of the growth, evolution, and self-aggregation of ß-amyloid fibrils using tapping-mode atomic force microscopy.

Amyloid peptide (Aß) is the major protein component of plaques found in Alzheimer's disease, and the aggregation of Aß into oligomeric and fibrillic assemblies has been shown to be an early event of the disease pathway. Visualization of the progressive evolution of nanoscale changes in the morphology of Aß oligomeric assemblies and amyloid fibrils has been accomplished ex situ using atomic force microscopy (AFM) in ambient conditions. In this report, the size and the shape of amyloid ß(1-40) fibrils, as well as the secondary organization into aggregate structures were monitored at different intervals over a period of 5 months. Characterizations with tapping-mode AFM serve to minimize the strong adhesive forces between the probe and the sample to prevent damage or displacement of fragile fibrils. The early stages of Aß growth showed a predominance of spherical seed structures, oligomeric assemblies, and protofibrils; however the size and density of fibrils progressively increased with time. Within a few days of incubation, linear assemblies and fibrils became apparent. Over extended time scales of up to 5 months, the fibrils formed dense ensembles spanning lengths of several microns, which exhibit interesting changes due to self-organization of the fibrils into bundles or tangles. Detailed characterization of the Aß assembly process at the nanoscale will help elucidate the role of Aß in the pathology of Alzheimer's disease.

Structure-activity relationships in peptide modulators of ß-amyloid protein aggregation: variation in α,α-disubstitution results in altered aggregate size and morphology.

Neuronal cytotoxicity observed in Alzheimer's disease (AD) is linked to the aggregation of ß-amyloid peptide (Aß) into toxic forms. Increasing evidence points to oligomeric materials as the neurotoxic species, not Aß fibrils; disruption or inhibition of Aß self-assembly into oligomeric or fibrillar forms remains a viable therapeutic strategy to reduce Aß neurotoxicity. We describe the synthesis and characterization of amyloid aggregation mitigating peptides (AAMPs) whose structure is based on the Aß "hydrophobic core" Aß(17-20), with α,α-disubstituted amino acids (ααAAs) added into this core as potential disrupting agents of fibril self-assembly. The number, positional distribution, and side-chain functionality of ααAAs incorporated into the AAMP sequence were found to influence the resultant aggregate morphology as indicated by ex situ experiments using atomic force microscopy (AFM) and transmission electron microscopy (TEM). For instance, AAMP-5, incorporating a sterically hindered ααAA with a diisobutyl side chain in the core sequence, disrupted Aß(1-40) fibril formation. However, AAMP-6, with a less sterically hindered ααAA with a dipropyl side chain, altered fibril morphology, producing shorter and larger sized fibrils (compared with those of Aß(1-40)). Remarkably, ααAA-AAMPs caused disassembly of existing Aß fibrils to produce either spherical aggregates or protofibrillar structures, suggesting the existence of equilibrium between fibrils and prefibrillar structures.

Nanografting versus solution self-assembly of alpha,omega-alkanedithiols on Au(111) investigated by AFM.

The solution self-assembly of alpha,omega-alkanedithiols onto Au(111) was investigated using atomic force microscopy (AFM). A heterogeneous surface morphology is apparent for 1,8-octanedithiol and for 1,9-nonanedithiol self-assembled monolayers (SAMs) prepared by solution immersion as compared to methyl-terminated n-alkanethiols. Local views from AFM images reveal a layer of mixed molecular orientations for alpha,omega-alkanedithiols, which evidence surface structures with heights corresponding to both lying-down and standing-up orientations. For dithiol SAMs prepared by solution self-assembly, the majority of alpha,omega-alkanedithiol molecules chemisorb with both thiol end groups bound to the Au(111) surface with the backbone of the alkane chain aligned parallel to the surface. However, AFM images disclose that there are also islands of standing molecules scattered throughout the surface. To measure the thickness of alpha,omega-alkanedithiol SAMs with angstrom sensitivity, methyl-terminated n-alkanethiols with known dimensions were used as molecular rulers. Under conditions of spatially constrained self-assembly, nanopatterns of alpha,omega-alkanedithiols written by nanografting formed monolayers with heights corresponding to an upright configuration.

Controlling the surface coverage and arrangement of proteins using particle lithography.

AIMS: The applicability of particle lithography with monodisperse mesospheres is tested with various proteins to control the surface coverage and dimensions of protein nanopatterns. METHODS & MATERIALS: The natural self-assembly of monodisperse spheres provides an efficient, high-throughput route to prepare protein nanopatterns. Mesospheres assemble spontaneously into organized crystalline layers when dried on flat substrates, which supply a structural frame or template to direct the placement of proteins. The template particles are displaced with a simple rinsing step to disclose periodic arrays of protein nanopatterns on surfaces. RESULTS & DISCUSSION: The proteins are attached securely to the surface, forming nanopatterns with a measured thickness of a single layer. The morphology and diameter of the protein nanostructures can be tailored by selecting the diameter of the mesospheres and choosing the protein concentration. CONCLUSIONS: Particle lithography is shown to be a practical, highly reproducible method for patterning proteins on surfaces of mica, glass and gold. High-throughput patterning was achieved with ferritin, apoferritin, bovine serum albumin and immunoglobulin-G. Depending on the ratio of proteins to mesospheres, either porous films or ring structures were produced. This approach can be applied for fundamental investigations of protein-binding interactions of biological systems in surface-bound bioassays and biosensor surfaces.