Xanthopsin-Like Systems via Site-Specific Click-Functionalization of a Retinoic Acid Binding Protein.

The use of light-responsive proteins to control both living or synthetic cells, is at the core of the expanding fields of optogenetics and synthetic biology. It is thus apparent that a richer reaction toolbox for the preparation of such systems is of fundamental importance. Here, we provide a proof-of-principle demonstration that Morita-Baylis-Hillman adducts can be employed to perform a facile site-specific, irreversible and diastereoselective click-functionalization of a lysine residue buried into a lipophilic binding pocket and yielding an unnatural chromophore with an extended π-system. In doing so we effectively open the path to the in vitro preparation of a library of synthetic proteins structurally reminiscent of xanthopsin eubacterial photoreceptors. We argue that such a library, made of variable unnatural chromophores inserted in an easy-to-mutate and crystallize retinoic acid transporter, significantly expand the scope of the recently introduced rhodopsin mimics as both optogenetic and "lab-on-a-molecule" tools.

Design, Synthesis and Characterization of a Visible-Light-Sensitive Molecular Switch and Its PEGylation Towards a Self-Assembling Molecule.

HBDI-like chromophores represent a novel set of biomimetic switches mimicking the fluorophore of the green fluorescent protein that are currently studied with the hope to expand the molecular switch/motor toolbox. However, until now members capable of absorbing visible light in their neutral (i. e. non-anionic) form have not been reported. In this contribution we report the preparation of an HBDI-like chromophore based on a 3-phenylbenzofulvene scaffold capable of absorbing blue light and photoisomerizing on the picosecond timescale. More specifically, we show that double-bond photoisomerization occurs in both the E-to-Z and Z-to-E directions and that these can be controlled by irradiating with blue and UV light, respectively. Finally, as a preliminary applicative result, we report the incorporation of the chromophore in an amphiphilic molecule and demonstrate the formation of a visible-light-sensitive nanoaggregated state in water.

Synthesis and photochromic behaviour of a series of benzopyrans bearing an N-phenyl-carbazole moiety: photochromism control by the steric effect.

Five new N-phenyl-carbazole benzopyrans bearing different substitutions on one of the phenyl rings at the sp3 carbon have been synthesized. Their molecular structures were investigated by X-ray and NMR analyses and through quantum chemical calculations. The photochromic mechanism under UV irradiation in toluene, consisting of the consecutive formation of transoid-cis (TC) and transoid-trans (TT) isomers, was studied by UV-vis spectral and kinetic analyses. These molecules have been specifically designed to ascertain the possibility of favouring the formation of the less thermodynamically stable TT at the photostationary state, upon exploiting steric hindrance effects on the diene part of the molecule. The spectrokinetic study allowed the estimation of most of the spectrokinetic parameters, such as molar extinction coefficients, quantum yields of UV colouration and visible photobleaching, and the rate constants of the fast and slow thermal bleaching processes. Peculiar effects of substituents with different donor strengths on one phenyl ring located at the 3-position were observed on the spectrokinetic properties.

Chiral separation of helical chromenes with chloromethyl phenylcarbamate polysaccharide-based stationary phases.

Two chloromethyl phenylcarbamate-based chiral stationary phases, one containing an amylose-type chiral selector (Lux Amylose 2, from Phenomenex) and the other a cellulose-type one (Lux Cellulose-4, from Phenomenex), were successfully used for the chiral resolution of three helical chromenes featuring a helicene-like structure. The compound bearing a phenyl substituent on the helicene-like structure was enantioresolved at 25°C with Lux Cellulose-4 and a n-hexane/1-propanol 99:1 v/v eluent. With a n-hexane/2-propanol 99.8:0.2 v/v mobile phase, the same column (operated at 35°C) provided the separation of the four isomers of the compound having a hexyl residue on the helicene-like motif and an additional asymmetric carbon. Lux Amylose-2 was necessary for the enantioseparation of the compound having the sole hexyl residue on the helical scaffold. For the last compound a n-hexane/2-propanol 99.8:0.2 v/v eluent was used, and the column temperature was fixed at 5°C. The enantiomer elution order was appraised by using electronic circular dichroism and theoretical calculations. Notably, different thermodynamics of retention and enantioseparation were observed for molecules with pronounced structural similarity, that is, the enantiomer pairs of the compound containing the additional asymmetric carbon atom. Indeed, both entropically and enthalpically controlled adsorption and separation processes were observed.

P-Type Photochromism of New Helical Naphthopyrans: Synthesis and Photochemical, Photophysical and Theoretical Study.

Two novel helical naphthopyrans have been synthesised. The helical scaffold has the interesting effect of increasing the thermal stability of the transoid-trans (TT) open isomer formed upon UV irradiation of the closed form (CF), which transforms these naphthopyrans from thermal to photochemical photochromes. The photochromic performance is excellent in both polar and apolar solvents and the conversion percentage from the CF to the TT form can be as high as 92.8 %. We propose a new method to determine the quantum yields of the photochemical processes that lead to transoid-cis (TC) and TT isomers, and their molar absorption coefficients. The thermal stability of the TT and TC isomers has been studied in different solvents. The quantum yields of fluorescence before and after irradiation, along with the decay lifetimes, have also been measured. TD-DFT calculations have been performed to determine the relative thermodynamic stability of the species involved in the photochromic mechanism and to rationalise their spectral properties.

A triplet-triplet annihilation based up-conversion process investigated in homogeneous solutions and oil-in-water microemulsions of a surfactant.

The triplet-triplet annihilation based up-conversion process, involving a platinum octaethyl-porphyrin (PtOEP) as a sensitizer and tetraphenyl-pyrene (TPPy) as an emitter, has been investigated in homogeneous solutions of toluene, bromobenzene and anisole, and oil-in-water microemulsions of the TX-100 surfactant, where toluene constitutes the non-polar phase. In homogeneous solutions, the highest up-conversion quantum yield (of the order of 20%) has been achieved in toluene, being the solvent that has the lowest viscosity among those explored. The up-conversion emission from the PtOEP-TPPy pair has been then investigated in a toluene based oil-in-water microemulsion at three different concentrations of the solutes, showing quantum yields up to the order of 1%, under the same irradiation conditions, but different deoxygenating procedures. The results herein reported might represent a good starting point for a future investigation in microheterogeneous systems. An optimization of the microemulsion composition, in terms of surfactant, co-surfactant and toluene concentrations, could allow us to increase the sensitizer and emitter concentrations and set up the best operative conditions to obtain even higher up-conversion efficiencies.

Light and pH tunable luminescence in a photochromic bisdiarylethene.

In this work the luminescence of a bisdiarylethene, containing a benzobis(imidazole) core substituted with two aniline moieties, has been investigated. In previous research, it was found that both acidification and irradiation reversibly triggered colour changes of this compound, thus generating a multi-responsive acidichromic and photochromic system. Intense fluorescence emission, which was detected in several organic solvents, can be an additional light driven signal. In a dioxane/water (1 : 1, v/v) mixture, intensity and spectral position of luminescence have been found to drastically depend on the pH/H0 values of the solutions (pH 5/H0-2 range) due to subsequent protonations (four steps) as the acidity of the solution changes. Alternated irradiations with UV and visible light lead to a decrease and increase, respectively, of the fluorescence intensity, due to the photochromic reaction producing a non-fluorescent compound. Quantum yields and lifetimes of fluorescence were determined as a function of the acidity. The results indicate that protonation shifts the emission to the red and decreases its intensity. The possibility of tuning the colour and intensity of luminescence by both acidification and irradiation generates a multi-switchable "fluorochromic" material.

Tetra- and tri-thienyl ethenes: new fluorescent photochromic compounds.

In this work the photochemistry and photophysics of two new ethenic compounds, a tetra-thienylethene (tetrakis) and a tri-thienylethene (triakis), have been investigated by steady state and time-resolved UV-vis absorption and luminescence spectroscopies. The quantum yields of the UV-photoinduced ring-closure reaction (Φ(O→C)) and of the visible-stimulated cycloreversion reaction (Φ(C→O)) were determined as a function of the temperature in 3-methylpentane. The trends of Φ(O→C) and Φ(C→O) with temperature suggest that a barrier exists to the ring opening reaction which hampers the cycloreversion in a rigid matrix at 80 K. For the closure reaction, a negative effect of the temperature on Φ(O→C) reflects an increased concentration of the more easily isomerizable antiparallel conformer with decreasing the temperature. Quantum yields and lifetimes of fluorescence, observed for tetrakis in both the colourless and coloured forms and for triakis only for the coloured form, were determined. The solvent and temperature effects on fluorescence were investigated. Nanosecond time-resolved experiments showed the formation of a triplet transient from tetrakis which could be a precursor of the main reaction photoproduct. For triakis no transient was detected.

High response photochromic films based on D-A diarylethenes and their application in holography.

A set of photochromic dithienylethenes bearing amino and nitro groups are synthesised and embedded at high concentrations in a polymer matrix (Cellulose Acetate Butyrate, CAB) to produce films showing a large reversible modulation of the complex refractive index in the Vis-NIR spectral range, thanks to an interesting combination of remarkable response at the molecular level and very high load capability in the chosen matrix. The photochromic derivatives are characterized in solution and in CAB films by means of electronic and vibrational spectroscopy, complemented by DFT calculations. Both the real and imaginary part of the refractive index are determined by spectroscopic ellipsometry. The modulation of the refractive index in the near infrared is in the range 0.02-0.04. These are very large values for such kinds of systems and they are due to a favourable combination of very large solubility of the derivatives in CAB and a high polarisability change. As for the change in transparency in the visible, contrast values larger than 103 are easily achieved. Based on such films, holograms are written and reconstructed with a very high fidelity and efficiency.

Neuronal firing modulation by a membrane-targeted photoswitch.

Optical technologies allowing modulation of neuronal activity at high spatio-temporal resolution are becoming paramount in neuroscience. In this respect, azobenzene-based photoswitches are promising nanoscale tools for neuronal photostimulation. Here we engineered a light-sensitive azobenzene compound (Ziapin2) that stably partitions into the plasma membrane and causes its thinning through trans-dimerization in the dark, resulting in an increased membrane capacitance at steady state. We demonstrated that in neurons loaded with the compound, millisecond pulses of visible light induce a transient hyperpolarization followed by a delayed depolarization that triggers action potential firing. These effects are persistent and can be evoked in vivo up to 7 days, proving the potential of Ziapin2 for the modulation of membrane capacitance in the millisecond timescale, without directly affecting ion channels or local temperature.

Static and dynamic interaction of a naturally occurring photochromic molecule with bovine serum albumin studied by UV-visible absorption and fluorescence spectroscopy.

In this work, the interaction of a naturally occurring chromene, flindersine (FL), and bovine serum albumin (BSA) has been investigated by UV-vis absorption and fluorescence spectroscopy, time-resolved lifetime measurements, steady state photochemistry, and semiempirical calculations. The interplay of FL with tryptophan (Trp) has been studied in parallel. The interaction of FL with BSA causes fluorescence quenching of BSA through both static and dynamic quenching mechanisms. FL binds BSA with a stoichiometry that varies from 1.09:1 to 0.80:1 as the temperature increases from 293 to 308 K. The reaction is characterized by negative enthalpy (deltaH degrees = -193 kJ mol(-1)) and negative entropy (deltaS degrees = -550 J K(-1) mol(-1)), indicating that the predominant forces in the FL-BSA complex are hydrogen bonding and van der Waals forces. The binding distance between the protein and the photochrome was calculated as 2.5 nm, according to the Foerster theory on resonance energy transfer. The effect of FL concentration on the BSA fluorescence was analyzed according to the maximum entropy method. FL also quenches the emission of Trp with a mechanism that, based on the experimental evidence, excludes both static and dynamic effects. An alternative relaxation pathway, consisting in an electron transfer from a prefluorescent state of Trp to FL, is put forward. The photobehavior of FL is affected by the interplay with BSA but not with Trp. When FL is complexed with BSA, it becomes a more fluorescent and more reactive species. Semiempirical calculations of the lowest optically active electronic transitions of hypothetical FL photoproducts suggest the most likely structure for the photoproduct.

New thermally irreversible and fluorescent photochromic diarylethenes.

A photokinetic investigation is here carried out on four newly synthesized diarylethenes with the aim to test their performance as photoreversible chromogenic and light emitting materials. The pentatomic ring, which fixes these diarylethenes in the cis conformation, contains a Si atom or a PO group. The 1,2 positions at the ethenic bond are symmetrically substituted with thienyl or benzothienyl groups. The results are compared with those for the structurally related and widely studied 1,2-bis(2-methyl-benzo[b]thiophen-3-yl)perfluorocyclopentene (BTF6), investigated here under the same experimental conditions. Spectra of the colorless and colored forms and photoreaction quantum yields were determined; temperature, excitation wavelength and viscosity effects were explored. Compounds containing benzothienyl substituents were found to be good bistable photochromes, with high photochemical yields of both the cyclization and cycloreversion reactions, and to display appreciable fluorescence emission from the colored forms, which is a rare and desirable property for photochromes. In contrast, the molecules not bearing the benzene condensed rings were found unsuitable as photochromes because of side degradation processes occurring in competition with cyclization.

Photoinduced processes in dipyrrolyl-perfluoro-cyclopentenes.

The photobehavior of five photochromic dipyrrolyl-perfluoro-cyclopentenes was studied by steady state and time-resolved absorption spectroscopy. The quantum yields of the UV-photoinduced ring-closing reaction (coloration) and the visible-stimulated cycloreversion reaction (bleaching) were measured. Kinetic and thermodynamic parameters of thermal bleaching were also determined. Nanosecond time-resolved experiments showed formation of a transient, which was not a precursor of the reaction photoproduct. This transient was tentatively assigned to a radical cation formed by direct photoionization through a short-lived triplet state. The nature of the transient species was supported by photoinduced electron transfer to electron acceptors.

Comprehensive photokinetic and NMR study of a biphotochromic supermolecule involving two naphthopyrans linked to a central thiophene unit through acetylenic bonds.

A photophysical and photochemical study of a biphotochromic compound where two naphthopyran units are linked by an acetylene-thiophene-acetylene bridge has been carried out in toluene. Both fluorescence and intersystem crossing to the triplet manifold were found to compete with the photocoloration process. Two photoproducts (transoid-trans and transoid-cis stereoisomers), absorbing at approximately 480 nm and corresponding to the opening of a single photochromic unit, were detected by spectrophotometric analysis after short irradiation time in diluted solution and identified by 1H-nuclear magnetic resonance (NMR) spectroscopy. After prolonged irradiation at 228 K of highly concentrated solutions (up to 3 x 10(-3) mol dm(-3)), two additional isomers, absorbing at approximately 550 nm, were formed. Their NMR spectra indicate the opening of both photochromic units. An interesting effect of selective vibronic excitation was found, showing that the photoreaction is favored at excited vibronic levels to the detriment of the radiative relaxation.

Photochemistry of flavothione and hydroxyflavothiones: mechanisms and kinetics.

In this work we present a detailed study of the mechanism of photochemistry and thermal reactions, as well as of the kinetics of flavothione (FLT) in ethanol. Furthermore, we analyzed how the hydroxysubstitution pattern of FLT influenced both the kinetics and the mechanism relative to the parent FLT. We show that the primary photochemical reaction of FLT in the absence of oxygen is hydrogen (H)-atom abstraction from the solvent by way of the excited triplet state of FLT. Several products result from thermal reactions of the resulting semireduced FLTH* radical, including more than one dimer. A full mechanism is proposed, and the relevant rate constants are evaluated. On the other hand, in the presence of oxygen and a low concentration of FLT, we found that the principal photoproduct is the parent flavone (FL). The reaction leading to photoxidation is not via 1O2 attacking a thione, but instead, it is via a reaction of the FLTH* radical with ground state oxygen. The kinetic data also demonstrate that the relative values of concentrations of reactants and the rate constants of the reactions can control the dominance of one mechanism over others. We also have examined the photochemical mechanisms and kinetics for several hydroxyflavothiones (n-OHFLT) and compared them with FLT itself. We have found that the photochemical mechanism radically changes depending on the positions of substitution. These differences are directly related to the ordering of the excited states of the n-OHFLT. Specifically, FLT with lowest 3n,pi* states (FLT, 6-hydroxyflavothione, 7-hydroxyflavothione and 7,8-dihydroxyflavothione) efficiently abstract H atoms to give the semireduced radical of the thione. The radical can (1) dimerize to form two different dimers; (2) react with oxygen to produce the parent FL; and (3) recombine with the solvent radical to yield the original FLT. In contrast, FLT with lowest 3pi,pi* states (3-hydroxyflavothione, 3,6-dihydroxyflavothione and 3,7-dihydroxyflavothione) behave as photosensitizers of oxygen to form singlet oxygen, which then reacts with the ground state of the substituted FLT. Finally, when T2(pi,pi*) is above S1(n,ppi*), as for 5-hydroxyflavothione and 5,7-dihydroxyflavothione, both the S1(n,pi*) --> T1(n,pi*) intersystem crossing and photodegradation are inefficient.

Effects of proximity on the relaxation dynamics of flindersine and 6(5H)-phenanthridinone.

The role played by the carbonyl group in the antenna system of a naturally occurring photochromic chromene, flindersine (FL), has been experimentally investigated and compared with that of a carbonyl group present in a structurally related unreactive heterocyclic compound, 6(5H)-phenanthridinone (PH). Through stationary and time-resolved absorption and emission techniques, the excited-state relaxation dynamics after UV irradiation were determined for FL and PH. The presence of a carbonyl group in both compounds entails the existence of two close-lying, strongly coupled electronic excited states, having n,pi* and pi,pi* character, respectively. Their coupling can be modulated by a careful choice of the solvent proticity and temperature. Moreover, in the case of strong coupling between the n,pi* and pi,pi* states, we have proved that the relaxation dynamics can involve transitions in which the upper of the coupled states acts as an intermediate for radiationless decay, bypassing the lowest emissive state, whereby the fluorescence quantum yield becomes a function of the excitation wavelength.

The complex photochromic behaviour of 5,6-benzo(2H)dimethylchromene in 3-methylpentane solution.

The photokinetic behaviour of 5,6-benzo(2H)dimethylchromene was investigated in 3-methylpentane solution by spectrophotometric methods using monochromatic irradiation wavelengths in the UV and visible regions. This molecule only exhibits photochromism at low temperature (T < 240 K), since the rate of the back thermal reaction (bleaching) is very fast (k > 10(2) s(-1)) at ambient temperature. The colour-forming kinetics were followed under continuous irradiation using UV light (318 nm) in two low temperature ranges (160-140 and 235-219 K). In the 160-140 K interval, the temperature is low enough to reduce the thermally activated processes and UV irradiation produces one coloured form, C1 (phi(C1) = 0.42). Visible light irradiation converts C1 (phi(-C1) = 0.10) to a photoproduct, P, which is thermally and photochemically stable in that temperature range. In the 235-219 K temperature interval, both thermal and photochemical processes were detected: two coloured forms, C1 and C2, are produced in consecutive steps, one of them is thermoreversible, whereas the other is photoreversible. Quantum yields of the photoreactions and kinetic parameters (rate coefficient and activation energy) of the thermal ring-closure reaction were determined. Based on the results obtained, a plausible reaction mechanism is proposed.

Effects of the environment on the photochromic behaviour of a novel indeno-fused naphthopyran.

The photochromism of a new chromene-type compound, an indeno-fused naphthopyran, was studied under steady irradiation in solvents of different polarity and/or proticity, in microheterogeneous systems (micelles and gel) and in a nematic liquid crystal. The solutions change from colourless to coloured upon UV irradiation, due to cleavage of the carbon-oxygen pyran bond. The photoreaction is thermally reversible. Spectra, molar absorption coefficients of the colourless and coloured forms, quantum yield of photocolouration and kinetic parameters of the thermal bleaching (rate constant and activation energy) were determined. Compared with other chromenes, the spectra of both the coloured and colourless forms are red-shifted and the coloured form exhibits a marked positive solvatochromism. The photocolourability is good, even at ambient temperature, and is better in a polar and/or protic medium where the entropy loss due to solvent reorganisation around the transition state decreases the rate of the bleaching process, Thus, the best media for colouration are ethanol and the liquid crystals, In the gel (Aerosol-OT [sodium bis(2-ethylhexyl)sulfosuccinate] isooctane-animal gelatin-water) and microemulsion (AOT-isooctane-water) the non-polar ground state molecules (in both the open and closed forms) occupy the hydrophobic sites and therefore the behaviour is similar to that observed in the pure hydrocarbon.

Dynamics of the excited states of chromenes studied by fast and ultrafast spectroscopies.

In this paper, the photodynamics of three chromenes (2,2-spiro-adamantyl-7,8-benzo(2H)chromene, 2,2-diphenyl(2H)chromene and 2,2-diphenyl-5,6-benzo(2H)chromene) has been investigated by nano- and femtosecond time resolved techniques in hydrocarbon solutions at room temperature. Using pump-probe techniques, ultrafast steps of molecular dynamics characterizing the photoresponse of chromenes have been investigated: the breakage of the C-O bond was found to occur within a few hundred femtoseconds producing a short-lived transient that converts to the cisoid-cis open form in less than one picosecond and then to the metastable transoid-cis structure within a few picoseconds. The effect of different excitation wavelengths on the formation rate of the first shortest-lived transient of 5,6DPBC is in agreement with the model previously proposed to explain the wavelength dependence of the reaction and emission quantum yields in photostationary experiments. The results obtained in the nanosecond time domain show that the triplet marginally participates in the photoreaction for only one of the studied compounds (2,2-spiro-adamantyl-7,8-benzo(2H)chromene).