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1.
Antimicrob Agents Chemother ; 67(3): e0142422, 2023 03 16.
Artigo em Inglês | MEDLINE | ID: mdl-36853006

RESUMO

Increasing occurrence of multidrug-resistant (MDR) and hypervirulent (hv) Klebsiella pneumoniae (MDR-hvKp) convergent clones is being observed. Those strains have the potential of causing difficult-to-treat infections in healthy adults with an increased capacity for mortality. It is therefore crucial to track their dissemination to prevent their further spread. The aim of our study was to investigate the occurrence of carbapenemase-producing hvKp isolates in Switzerland and to determine their genetic profile. A total of 279 MDR carbapenemase-producing K. pneumoniae from patients hospitalized all over Switzerland was investigated, and a rate of 9.0% K. pneumoniae presenting a virulence genotype was identified. Those isolates produced either KPC, NDM, or OXA-48 and had been either recovered from rectal swabs, urine, and blood. A series of previously reported K. pneumoniae clones such as ST23-K1, ST395-K2, and ST147-K20 or ST147-K64 were identified. All the isolates defined as MDR-hvKp (4.7%) possessed the aerobactin and the yersiniabactin clusters. The ST23-K1s were the only isolates presenting the colibactin cluster and achieved higher virulence scores. This study highlights the occurrence and circulation of worrisome MDR-hvKp and MDR nonhypervirulent K. pneumoniae (MDR-nhv-Kp) isolates in Switzerland. Our findings raise an alert regarding the need for active surveillance networks to track and monitor the spread of such successful hybrid clones representing a public health threat worldwide.


Assuntos
Infecções por Klebsiella , Klebsiella pneumoniae , Adulto , Humanos , Suíça/epidemiologia , Proteínas de Bactérias/genética , beta-Lactamases/genética , Infecções por Klebsiella/tratamento farmacológico , Infecções por Klebsiella/epidemiologia , Antibacterianos/farmacologia , Antibacterianos/uso terapêutico
2.
PLoS Genet ; 14(7): e1007563, 2018 07.
Artigo em Inglês | MEDLINE | ID: mdl-30059503

RESUMO

RNA-binding proteins (RBPs) establish the cellular fate of a transcript, but an understanding of these processes has been limited by a lack of identified specific interactions between RNA and protein molecules. Using MS2 RNA tagging, we have purified proteins associated with individual mRNA species induced by osmotic stress, STL1 and GPD1. We found members of the Lsm1-7/Pat1 RBP complex to preferentially bind these mRNAs, relative to the non-stress induced mRNAs, HYP2 and ASH1. To assess the functional importance, we mutated components of the Lsm1-7/Pat1 RBP complex and analyzed the impact on expression of osmostress gene products. We observed a defect in global translation inhibition under osmotic stress in pat1 and lsm1 mutants, which correlated with an abnormally high association of both non-stress and stress-induced mRNAs to translationally active polysomes. Additionally, for stress-induced proteins normally triggered only by moderate or high osmostress, in the mutants the protein levels rose high already at weak hyperosmosis. Analysis of ribosome passage on mRNAs through co-translational decay from the 5' end (5P-Seq) showed increased ribosome accumulation in lsm1 and pat1 mutants upstream of the start codon. This effect was particularly strong for mRNAs induced under osmostress. Thus, our results indicate that, in addition to its role in degradation, the Lsm1-7/Pat1 complex acts as a selective translational repressor, having stronger effect over the translation initiation of heavily expressed mRNAs. Binding of the Lsm1-7/Pat1p complex to osmostress-induced mRNAs mitigates their translation, suppressing it in conditions of weak or no stress, and avoiding a hyperresponse when triggered.


Assuntos
Pressão Osmótica/fisiologia , Proteínas de Ligação ao Cap de RNA/metabolismo , RNA Mensageiro/metabolismo , Proteínas de Ligação a RNA/metabolismo , Proteínas de Saccharomyces cerevisiae/metabolismo , Saccharomyces cerevisiae/fisiologia , Glicerol-3-Fosfato Desidrogenase (NAD+)/genética , Glicerol-3-Fosfato Desidrogenase (NAD+)/metabolismo , Proteínas de Membrana Transportadoras/genética , Proteínas de Membrana Transportadoras/metabolismo , Ligação Proteica/fisiologia , Biossíntese de Proteínas/fisiologia , Proteínas de Ligação ao Cap de RNA/genética , Proteínas de Ligação a RNA/genética , Proteínas Repressoras/genética , Proteínas de Saccharomyces cerevisiae/genética
3.
Proc Natl Acad Sci U S A ; 113(3): 536-41, 2016 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-26719416

RESUMO

Strictly speaking, the laws of the conventional statistical physics, based on the equipartition postulate [Gibbs J W (1902) Elementary Principles in Statistical Mechanics, developed with especial reference to the rational foundation of thermodynamics] and ergodicity hypothesis [Boltzmann L (1964) Lectures on Gas Theory], apply only in the presence of a heat bath. Until recently this restriction was believed to be not important for real physical systems because a weak coupling to the bath was assumed to be sufficient. However, this belief was not examined seriously until recently when the progress in both quantum gases and solid-state coherent quantum devices allowed one to study the systems with dramatically reduced coupling to the bath. To describe such systems properly one should revisit the very foundations of statistical mechanics. We examine this general problem for the case of the Josephson junction chain that can be implemented in the laboratory and show that it displays a novel high-temperature nonergodic phase with finite resistance. With further increase of the temperature the system undergoes a transition to the fully localized state characterized by infinite resistance and exponentially long relaxation.

4.
Aten Primaria ; 51(1): 18-23, 2019 01.
Artigo em Espanhol | MEDLINE | ID: mdl-29477546

RESUMO

INTRODUCTION: The assessment of the Diabetes Mellitus 2 Care Process (PAI-DM2) through the assessment tool for the chronic illness' care models (IEMAC-Diabetes) allows the design of health interventions for the improvement of medical care. OBJECTIVE: Analysing the quality of healthcare provided to DM2 patients. DESIGN: Quasiexperimental study before and after intervention with a not randomised control group. LOCATION: Health care district of primary care Sevilla. PARTICIPANTS: 12 groups of ascribed patients, 5 Primary Care Healthcenter, chosen in a discretionary way. INTERVENTION: Physicians and nurses from the 12 intervention groups took part in a training program, including an external rotation in the Diabetes Daycare Hospital. MAIN MEASUREMENTS: Number of included patients, glycated hemoglobin, feet exploration (FE), and ocular fundus (OF). RESULTS: 1,475 DM-2 patients were analysed. The proportion of included patients per group was 8.5%, 45.5% were women. At the beginning of the study, the rate of patients with HbA1c<7% were 38.9% in 2013 against 47.7% in 2014 and 40.2% in 2016; 33% of the patients had an OF in 2013 against 41.77% in 2014; 51.6% of patients had an EF against 54.7% in 2014. After the intervention, statistically significant differences were reached in HbA1c (p=0.01) and retinography requested (p=0.01). CONCLUSIONS: IEMAC-Diabetes allows spotting improvement areas in the PAI-DM2. The absence of statistically significant differences may be the result of contamination in the sample and/or Hawthorne effect.


Assuntos
Diabetes Mellitus Tipo 2/terapia , Melhoria de Qualidade , Indicadores de Qualidade em Assistência à Saúde/normas , Estudos Controlados Antes e Depois , Diabetes Mellitus Tipo 2/sangue , Feminino , , Fundo de Olho , Hemoglobinas Glicadas/análise , Humanos , Masculino , Exame Físico , Retina/diagnóstico por imagem , Espanha
5.
Photosynth Res ; 137(2): 251-262, 2018 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-29525874

RESUMO

Oxidation of the cysteines from ribulose 1,5-bisphosphate carboxylase/oxygenase (RubisCO) leads to inactivation and promotes structural changes that increase the proteolytic sensitivity and membrane association propensity related to its catabolism. To uncover the individual role of the different cysteines, the sequential order of modification under increasing oxidative conditions was determined using chemical labeling and mass spectrometry. Besides, site-directed RubisCO mutants were obtained in Chlamydomonas reinhardtii replacing single conserved cysteines (Cys84, Cys172, Cys192, Cys247, Cys284, Cys427, Cys459 from the large and sCys41, sCys83 from the small subunit) and the redox properties of the mutant enzymes were determined. All mutants retained significant carboxylase activity and grew photoautotrophically, indicating that these conserved cysteines are not essential for catalysis. Cys84 played a noticeable structural role, its replacement producing a structurally altered enzyme. While Cys247, Cys284, and sCys83 were not affected by the redox environment, all other residues were oxidized using a disulfide/thiol ratio of around two, except for Cys172 whose oxidation was distinctly delayed. Remarkably, Cys192 and Cys427 were apparently protective, their absence leading to a premature oxidation of critical residues (Cys172 and Cys459). These cysteines integrate a regulatory network that modulates RubisCO activity and conformation in response to oxidative conditions.


Assuntos
Chlamydomonas reinhardtii/enzimologia , Cisteína/química , Ribulose-Bifosfato Carboxilase/química , Ribulose-Bifosfato Carboxilase/metabolismo , Chlamydomonas reinhardtii/genética , Chlamydomonas reinhardtii/metabolismo , Sequência Conservada , Cisteína/metabolismo , Regulação Enzimológica da Expressão Gênica , Modelos Moleculares , Mutação , Conformação Proteica , Ribulose-Bifosfato Carboxilase/genética
6.
J Proteome Res ; 15(11): 4101-4115, 2016 11 04.
Artigo em Inglês | MEDLINE | ID: mdl-27581094

RESUMO

The current catalogue of the human proteome is not yet complete, as experimental proteomics evidence is still elusive for a group of proteins known as the missing proteins. The Human Proteome Project (HPP) has been successfully using technology and bioinformatic resources to improve the characterization of such challenging proteins. In this manuscript, we propose a pipeline starting with the mining of the PRIDE database to select a group of data sets potentially enriched in missing proteins that are subsequently analyzed for protein identification with a method based on the statistical analysis of proteotypic peptides. Spermatozoa and the HEK293 cell line were found to be a promising source of missing proteins and clearly merit further attention in future studies. After the analysis of the selected samples, we found 342 PSMs, suggesting the presence of 97 missing proteins in human spermatozoa or the HEK293 cell line, while only 36 missing proteins were potentially detected in the retina, frontal cortex, aorta thoracica, or placenta. The functional analysis of the missing proteins detected confirmed their tissue specificity, and the validation of a selected set of peptides using targeted proteomics (SRM/MRM assays) further supports the utility of the proposed pipeline. As illustrative examples, DNAH3 and TEPP in spermatozoa, and UNCX and ATAD3C in HEK293 cells were some of the more robust and remarkable identifications in this study. We provide evidence indicating the relevance to carefully analyze the ever-increasing MS/MS data available from PRIDE and other repositories as sources for missing proteins detection in specific biological matrices as revealed for HEK293 cells.


Assuntos
Biologia Computacional/métodos , Bases de Dados de Proteínas , Proteoma/análise , Aorta/química , Feminino , Lobo Frontal/química , Células HEK293 , Humanos , Masculino , Placenta/química , Gravidez , Proteômica/métodos , Retina/química , Espermatozoides/química , Espectrometria de Massas em Tandem
7.
J Proteome Res ; 14(3): 1350-60, 2015 Mar 06.
Artigo em Inglês | MEDLINE | ID: mdl-25612097

RESUMO

Experimental evidence for the entire human proteome has been defined in the Human Proteome Project, and it is publicly available in the neXtProt database. However, there are still human proteins for which reliable experimental evidence does not exist, and the identification of such information has become one of the overriding objectives in the chromosome-centric study of the human proteome. With this aim and considering the complexity of protein detection using shotgun and targeted proteomics, the research community has addressed the integration of transcriptomics and proteomics landscapes. Here, we describe an analytical pipeline that predicts the probability of a missing protein being expressed in a biological sample based on (1) gene sequence characteristics, (2) the probability of an expressed gene being a coding gene of a missing protein in a certain sample, and (3) the probability of a gene being expressed in a transcriptomic experiment. More than 3400 microarray experiments were analyzed corresponding to three biological sources: cell lines, normal tissues, and cancer samples. A gene classification based on gene expression profiles distinguished among ubiquitous, nonubiquitous, nonexpressed, and coding genes of missing proteins. In addition, a different tissue-specific expression pattern for the coding genes of missing proteins is reported. Our results underline the relevance of selecting an appropriate sample for the detection of missing proteins and provide a comprehensive method to score their expression probability. Testis, brain, and skeletal muscle are the most promising normal tissues.


Assuntos
Proteínas/metabolismo , Proteoma , Humanos , Análise Serial de Proteínas , Proteínas/química , Proteínas/genética , Transcriptoma
8.
Proc Natl Acad Sci U S A ; 109(18): 6845-50, 2012 May 01.
Artigo em Inglês | MEDLINE | ID: mdl-22499785

RESUMO

We consider the problem of existence of entire solutions to the Allen-Cahn equation Δu + u - u(3) = 0 in , usually regarded as a prototype for the modeling of phase transition phenomena. In particular, exploiting the link between the Allen-Cahn equation and minimal surface theory in dimensions N ≥ 9, we find a solution, u, with ∂(x(N))u > 0, such that its level sets are close to a nonplanar, minimal, entire graph. This counterexample provides a negative answer to a celebrated question by Ennio de Giorgi [De Giorgi E (1979) Proceedings of the International Meeting on Recent Methods in Nonlinear Analysis (Rome, 1978), 131-188, Pitagora, Bologna]. Our results suggest parallels of De Giorgi's conjecture for finite Morse index solutions in two and three dimensions and suggest a possible program of classification of all entire solutions.

9.
J Proteome Res ; 13(1): 158-72, 2014 Jan 03.
Artigo em Inglês | MEDLINE | ID: mdl-24138474

RESUMO

The Spanish team of the Human Proteome Project (SpHPP) marked the annotation of Chr16 and data analysis as one of its priorities. Precise annotation of Chromosome 16 proteins according to C-HPP criteria is presented. Moreover, Human Body Map 2.0 RNA-Seq and Encyclopedia of DNA Elements (ENCODE) data sets were used to obtain further information relative to cell/tissue specific chromosome 16 coding gene expression patterns and to infer the presence of missing proteins. Twenty-four shotgun 2D-LC-MS/MS and gel/LC-MS/MS MIAPE compliant experiments, representing 41% coverage of chromosome 16 proteins, were performed. Furthermore, mapping of large-scale multicenter mass spectrometry data sets from CCD18, MCF7, Jurkat, and Ramos cell lines into RNA-Seq data allowed further insights relative to correlation of chromosome 16 transcripts and proteins. Detection and quantification of chromosome 16 proteins in biological matrices by SRM procedures are also primary goals of the SpHPP. Two strategies were undertaken: one focused on known proteins, taking advantage of MS data already available, and the second, aimed at the detection of the missing proteins, is based on the expression of recombinant proteins to gather MS information and optimize SRM methods that will be used in real biological samples. SRM methods for 49 known proteins and for recombinant forms of 24 missing proteins are reported in this study.


Assuntos
Cromossomos Humanos Par 16 , Proteoma , Transcriptoma , Cromatografia Líquida , Humanos , Espectrometria de Massas , Análise de Sequência de RNA
10.
J Exp Clin Cancer Res ; 42(1): 8, 2023 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-36604765

RESUMO

BACKGROUND: Patient-derived organoids (PDOs) from advanced colorectal cancer (CRC) patients could be a key platform to predict drug response and discover new biomarkers. We aimed to integrate PDO drug response with multi-omics characterization beyond genomics. METHODS: We generated 29 PDO lines from 22 advanced CRC patients and provided a morphologic, genomic, and transcriptomic characterization. We performed drug sensitivity assays with a panel of both standard and non-standard agents in five long-term cultures, and integrated drug response with a baseline proteomic and transcriptomic characterization by SWATH-MS and RNA-seq analysis, respectively. RESULTS: PDOs were successfully generated from heavily pre-treated patients, including a paired model of advanced MSI high CRC deriving from pre- and post-chemotherapy liver metastasis. Our PDOs faithfully reproduced genomic and phenotypic features of original tissue. Drug panel testing identified differential response among PDOs, particularly to oxaliplatin and palbociclib. Proteotranscriptomic analyses revealed that oxaliplatin non-responder PDOs present enrichment of the t-RNA aminoacylation process and showed a shift towards oxidative phosphorylation pathway dependence, while an exceptional response to palbociclib was detected in a PDO with activation of MYC and enrichment of chaperonin T-complex protein Ring Complex (TRiC), involved in proteome integrity. Proteotranscriptomic data fusion confirmed these results within a highly integrated network of functional processes involved in differential response to drugs. CONCLUSIONS: Our strategy of integrating PDOs drug sensitivity with SWATH-mass spectrometry and RNA-seq allowed us to identify different baseline proteins and gene expression profiles with the potential to predict treatment response/resistance and to help in the development of effective and personalized cancer therapeutics.


Assuntos
Antineoplásicos , Neoplasias Colorretais , Humanos , Antineoplásicos/farmacologia , Antineoplásicos/uso terapêutico , Oxaliplatina/farmacologia , Oxaliplatina/uso terapêutico , Proteômica , Neoplasias Colorretais/tratamento farmacológico , Neoplasias Colorretais/genética , Neoplasias Colorretais/metabolismo , Organoides
11.
J Oral Microbiol ; 14(1): 2030094, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35087641

RESUMO

BACKGROUND: SARS-CoV-2 is continuously disseminating worldwide. The development of strategies to break transmission is mandatory. AIM OF THE STUDY: To investigate the potential of cetylpyridinium chloride (CPC) as a viral inhibitor. METHODS: SARS-CoV-2 Virus Like-Particles (VLPs) were incubated with CPC, a potent surfactant routinely included in mouthwash preparations. RESULTS: Concentrations of 0.05% CPC (w/v) commonly used in mouthwash preparations are sufficient to promote the rupture of SARS-CoV-2 VLP membranes. CONCLUSION: Including CPC in mouthwashes could be a prophylactic strategy to keep SARS-CoV-2 from spreading.

12.
J Proteomics ; 251: 104409, 2022 01 16.
Artigo em Inglês | MEDLINE | ID: mdl-34758407

RESUMO

Global analysis of protein phosphorylation by mass spectrometry proteomic techniques has emerged in the last decades as a powerful tool in biological and biomedical research. However, there are several factors that make the global study of the phosphoproteome more challenging than measuring non-modified proteins. The low stoichiometry of the phosphorylated species and the need to retrieve residue specific information require particular attention on sample preparation, data acquisition and processing to ensure reproducibility, qualitative and quantitative robustness and ample phosphoproteome coverage in phosphoproteomic workflows. Aiming to investigate the effect of different variables in the performance of proteome wide phosphoprotein analysis protocols, ProteoRed-ISCIII and EuPA launched the Proteomics Multicentric Experiment 11 (PME11). A reference sample consisting of a yeast protein extract spiked in with different amounts of a phosphomix standard (Sigma/Merck) was distributed to 31 laboratories around the globe. Thirty-six datasets from 23 laboratories were analyzed. Our results indicate the suitability of the PME11 reference sample to benchmark and optimize phosphoproteomics strategies, weighing the influence of different factors, as well as to rank intra and inter laboratory performance.


Assuntos
Proteoma , Proteômica , Laboratórios , Fosfoproteínas/análise , Fosforilação , Proteoma/análise , Proteômica/métodos , Padrões de Referência , Reprodutibilidade dos Testes
13.
Exp Parasitol ; 128(2): 133-7, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21334327

RESUMO

The somatic extract of Zygocotyle lunata (Trematoda: Paramphistomidae) adults collected from experimentally infected mice was investigated using a proteomic approach to separate and identify tryptic peptides from the somatic extract of Z. lunata adult worms. A shot-gun liquid chromatography/tandem mass spectrometry procedure was used. We used the MASCOT search engine (Matrix-Science) and ProteinPilot software v2.0 (Applied Biosystems) for the database search. A total of 36 proteins were accurately identified from the worms. The largest protein family consisted of metabolic enzymes. Structural, motor and receptor binding proteins and proteins related to oxygen transport were identified in the somatic extract of Z. lunata. This is the first study that attempts to identify the proteome of Z. lunata. However, more work is needed to improve our knowledge of trematodiasis in general and more specifically to have a better understanding about host-parasite relationships in infections with paramphistomes.


Assuntos
Proteínas de Helminto/análise , Paramphistomatidae/química , Proteoma/análise , Infecções por Trematódeos/parasitologia , Animais , Cromatografia Líquida , Bases de Dados de Proteínas , Proteínas de Helminto/genética , Interações Hospedeiro-Parasita , Masculino , Camundongos , Camundongos Endogâmicos BALB C , Paramphistomatidae/genética , Paramphistomatidae/fisiologia , Proteoma/genética , Espectrometria de Massas em Tandem
14.
Diagn Microbiol Infect Dis ; 101(4): 115475, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-34419742

RESUMO

The industrial version of SuperCAZ/AVI® medium developed for screening CAZ/AVI resistant Gram-negative isolates has been evaluated here using a collection of 87 well-characterized clinical isolates of worldwide origin. In addition, testing was performed by spiking stools with a series of resistant and susceptible isolates. In those conditions, the SuperCAZ/AVI® medium exhibited a sensitivity and specificity of 100 %, down to the lower limit of detection of 101 to 102 CFU/ml. The SuperCAZ/AVI® medium is a sensitive and specific screening medium for detection of CZA-resistant bacteria regardless of their resistance mechanisms.


Assuntos
Compostos Azabicíclicos/farmacologia , Ceftazidima/farmacologia , Farmacorresistência Bacteriana Múltipla/efeitos dos fármacos , Bactérias Gram-Negativas/efeitos dos fármacos , Testes de Sensibilidade Microbiana/instrumentação , Antibacterianos/farmacologia , Meios de Cultura , Combinação de Medicamentos , Fezes/microbiologia , Bactérias Gram-Negativas/isolamento & purificação , Infecções por Bactérias Gram-Negativas/diagnóstico , Infecções por Bactérias Gram-Negativas/microbiologia , Humanos , Limite de Detecção , Sensibilidade e Especificidade , Inibidores de beta-Lactamases/farmacologia
15.
Environ Health Perspect ; 129(3): 35002, 2021 03.
Artigo em Inglês | MEDLINE | ID: mdl-33769848

RESUMO

BACKGROUND: Uranium contamination of drinking-water sources on American Indian (AI) reservations in the United States is a largely ignored and underfunded public health crisis. With an estimated 40% of the headwaters in the western U.S. watershed, home to many AI reservation communities, being contaminated with untreated mine waste, the potential health effects have largely been unexplored. With AI populations already facing continued and progressive economic and social marginalization, higher prevalence of chronic disease, and systemic discrimination, associations between various toxicant exposures, including uranium, and various chronic conditions, need further examination. OBJECTIVES: Uranium's health effects, in addition to considerations for uranium drinking-water testing, reporting, and mitigation in reference to AI communities through the lens of water quality, is reviewed. DISCUSSION: A series of environmental health policy recommendations are described with the intent to proactively improve responsiveness to the water quality crisis in AI reservation communities in the United States specific to uranium. There is a serious and immediate need for better coordination of uranium-related drinking-water testing and reporting on reservations in the United States that will better support and guide best practices for uranium mitigation efforts. https://doi.org/10.1289/EHP7537.


Assuntos
Indígenas Norte-Americanos , Urânio , Saúde Ambiental , Substâncias Perigosas , Humanos , Políticas , Estados Unidos , Urânio/análise , Indígena Americano ou Nativo do Alasca
16.
Pak J Biol Sci ; 24(12): 1297-1308, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34989206

RESUMO

<b>Background and Objective:</b> Photoperiod can regulate reproductive physiological processes in mammals, in which improvements in testosterone concentration, testicular volume and seminal quality have been reported. The aim was to evaluate the influence of photoperiod treatments on guinea pigs' spermatic parameters. <b>Materials and Methods:</b> Thirty guinea pigs, between males and females, were distributed in two rooms with the photoperiodic treatment of 10 hrs light and 14 hrs dark (PT<sub>1</sub> with artificial photoperiod and PT<sub>2</sub> photoperiod with sunlight by opening windows from 08:00-18:00) and one without any direct light stimulus (PT<sub>0</sub>) for 78 days. The temperature and humidity were recorded and the TH index was calculated for each room. The sperms were recovered in Tris base medium from the epididymis of 16 males to determine sperm concentration, motility, kinetic parameters, vitality, HOST, acrosomal integrity and DNA fragmentation. <b>Results:</b> Sperm values in PT<sub>1</sub> and PT<sub>0</sub> were similar but PT<sub>2</sub> obtained values lower in sperm concentration, non-progressive motility, total motility, VCL, ALH, vitality, HOST+, acrosomal integrity, sperm with non-fragmented DNA and no pregnancies were reported (0/5). A 100% pregnancy was observed in PT<sub>0</sub> (4/4) and 50% in PT<sub>1</sub> (2/4). However, precocity was evidenced in PT<sub>1</sub> compared to PT<sub>0</sub>. PT<sub>2</sub> recorded higher peaks in temperature (33.8°C, THI 81, considered as thermal stress) compared to PT<sub>0</sub> (32.65°C, THI 81.8) and PT<sub>1</sub> (32.75°C, THI 81.6). <b>Conclusion:</b> An artificial photoperiod can improve sperm characteristics and reproductive precociousness of guinea pigs, unlike the photoperiod with sunlight, which generated low spermiogram values and absence of pregnancy due to thermal stress.


Assuntos
Cobaias/fisiologia , Análise do Sêmen/estatística & dados numéricos , Luz Solar/efeitos adversos , Termotolerância/fisiologia , Animais , Análise do Sêmen/métodos
17.
Pak J Biol Sci ; 24(4): 468-476, 2021 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-34486306

RESUMO

<b>Background and Objective:</b> Forage production in the tropics is generally asymmetrically distributed. Hence the need to use more complex models, especially when multiple comparisons are made and there are very large deviations from normality. The objective of this research is to fit a Generalized Additive Model for Location, Scale and Shape (GAMLSS) model on accumulated dry matter data from <i>Brachiaria brizantha</i> using a model selection algorithm. <b>Materials and Methods:</b> A Box-Cox Power Exponential (BCPE) distribution was adjusted on the dry matter from <i>Brachiaria brizantha</i> data implementing GAMLSS in R (programming language). The accumulated dry matter data for <i>B. brizantha</i> were obtained from a study carried out on a farm in the state of Portuguesa, Venezuela. The explanatory covariate x was the interval between cuts (21, 28, 35 and 42 days). <b>Results:</b> The dependent variable (dry matter) exhibited both skewness and kurtosis. GAMLSS allowed flexible modeling of both the distribution of the dry matter yield from <i>B. brizantha</i> and the dependence of all the parameters of the distribution on intervals between cuttings. For the dry matter yield from <i>B. brizantha</i>, which exhibited skewness and leptokurtosis, the BCPE distribution, provided the best fit. <b>Conclusion:</b> The interval between cuttings showed an effect that is reflected in the average yield of dry matter from <i>B. brizantha</i>. The interval between cuts affected the skewness and the kurtosis of the distribution.


Assuntos
Algoritmos , Brachiaria/crescimento & desenvolvimento , Mapeamento Geográfico , Agricultura/métodos , Humanos , Venezuela
18.
Parasitol Res ; 107(3): 691-7, 2010 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20512505

RESUMO

The excretory/secretory proteome of Echinostoma caproni (Trematoda: Echinostomatidae) adults collected from experimentally infected mice was investigated using a proteomic approach. We performed a shot-gun liquid chromatography/tandem mass spectrometry for the separation and identification of tryptic peptides from the excretory/secretory products of E. caproni adult worms. Database search was performed using MASCOT search engine (Matrix-Science) and ProteinPilot software v2.0 (Applied Biosystems). A total of 39 parasite proteins were accurately identified. Strikingly, metabolic enzymes, and particularly glycolytic enzymes, constituted the largest protein family in the excretory/secretory proteome of E. caproni adult worms. Moreover, representative proteins involved in parasite structure, response against stress, chaperones, calcium-binding, and signal transduction were also identified. This work extends our knowledge of host-parasite relationships in the E. caproni-rodent model that is extensively used to analyze the factors determining the intestinal helminth rejection. Consequently, information on many proteins may be useful to better understand the molecular basis that determines the survival of this parasite in the definitive host.


Assuntos
Echinostoma/fisiologia , Equinostomíase/parasitologia , Proteínas de Helminto/metabolismo , Proteoma , Animais , Biomphalaria/parasitologia , Cromatografia Líquida , Modelos Animais de Doenças , Echinostoma/metabolismo , Echinostoma/patogenicidade , Perfilação da Expressão Gênica , Proteínas de Helminto/química , Interações Hospedeiro-Parasita , Espectrometria de Massas , Camundongos , Camundongos Endogâmicos ICR
19.
Anal Biochem ; 393(1): 80-7, 2009 Oct 01.
Artigo em Inglês | MEDLINE | ID: mdl-19539595

RESUMO

In vitro, prolyl oligopeptidase (POP) cleaves proline-containing bioactive peptides such as substance P, gonadotropin-releasing hormone, thyrotropin-releasing hormone, arginine-vasopressin, and neurotensin. Based on specific in vivo inhibition, POP has been suggested to be involved in cognitive and psychiatric processes but the identity of its physiological substrates has remained inconclusive. We have combined (a) sample snap-freezing and boiling buffer extraction, to limit protein degradation and reduce sample complexity; (b) pH two-dimensional liquid reverse-phase chromatography to enhance resolution; and (c) iTRAQ isobaric labeling to identify the rat brain peptides whose levels were differentially changed due to in vivo POP inhibition. In the hypothalamus, all the substrates found were part of precursors of secreted peptides such as copeptin, PACAP-related peptide, somatostatin, and proSAAS derived peptides, while in the cerebellum the peptides were derived from carcinoma-amplified sequence 1 homolog and calmodulin. In the striatum, somatostatin precursor derived peptide, fragments from E3-SUMO protein ligase RanBP2, and the subunit 5A of cytochrome c oxidase were increased. When analyzing the peptides that were significantly reduced by POP inhibition we found fragments from large protein complexes but, exclusively in the cerebellum, bioactive peptides such as cerebellin and fibrinopeptides A and B were detected.


Assuntos
Encéfalo/efeitos dos fármacos , Encéfalo/enzimologia , Cromatografia Líquida de Alta Pressão/métodos , Peptídeos/análise , Inibidores de Proteases/farmacologia , Proteômica/métodos , Serina Endopeptidases/metabolismo , Animais , Congelamento , Concentração de Íons de Hidrogênio , Interações Hidrofóbicas e Hidrofílicas , Masculino , Peptídeos/metabolismo , Prolil Oligopeptidases , Ratos , Ratos Wistar , Especificidade por Substrato
20.
Biochem J ; 411(2): 457-65, 2008 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-18237276

RESUMO

MTAP (5'-methylthioadenosine phosphorylase) catalyses the reversible phosphorolytic cleavage of methylthioadenosine leading to the production of methylthioribose-1-phosphate and adenine. Deficient MTAP activity has been correlated with human diseases including cirrhosis and hepatocellular carcinoma. In the present study we have investigated the regulation of MTAP by ROS (reactive oxygen species). The results of the present study support the inactivation of MTAP in the liver of bacterial LPS (lipopolysaccharide)-challenged mice as well as in HepG2 cells after exposure to t-butyl hydroperoxide. Reversible inactivation of purified MTAP by hydrogen peroxide results from a reduction of V(max) and involves the specific oxidation of Cys(136) and Cys(223) thiols to sulfenic acid that may be further stabilized to sulfenyl amide intermediates. Additionally, we found that Cys(145) and Cys(211) were disulfide bonded upon hydrogen peroxide exposure. However, this modification is not relevant to the mediation of the loss of MTAP activity as assessed by site-directed mutagenesis. Regulation of MTAP by ROS might participate in the redox regulation of the methionine catabolic pathway in the liver. Reduced MTA (5'-deoxy-5'-methylthioadenosine)-degrading activity may compensate for the deficient production of the precursor S-adenosylmethionine, allowing maintenance of intracellular MTA levels that may be critical to ensure cellular adaptation to physiopathological conditions such as inflammation.


Assuntos
Hepatócitos/enzimologia , Purina-Núcleosídeo Fosforilase/metabolismo , Sequência de Aminoácidos , Animais , Linhagem Celular Tumoral , Dissulfetos/química , Dissulfetos/metabolismo , Ativação Enzimática/efeitos dos fármacos , Hepatócitos/efeitos dos fármacos , Humanos , Peróxido de Hidrogênio/farmacologia , Lipopolissacarídeos/farmacologia , Masculino , Camundongos , Camundongos Endogâmicos C57BL , Oxirredução , Purina-Núcleosídeo Fosforilase/química , Tionucleosídeos/metabolismo
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