Detalhe da pesquisa
1.
Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism.
Brief Bioinform
; 25(3)2024 Mar 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38546323
2.
gMCSpy: Efficient and accurate computation of genetic minimal cut sets in python.
Bioinformatics
; 2024 May 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-38748994
3.
BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities.
Bioinformatics
; 40(5)2024 May 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-38688585
4.
A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism.
PLoS Comput Biol
; 18(3): e1009395, 2022 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-35286311
5.
BOSO: A novel feature selection algorithm for linear regression with high-dimensional data.
PLoS Comput Biol
; 18(5): e1010180, 2022 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35639775
6.
ALAD Inhibition by Porphobilinogen Rationalizes the Accumulation of δ-Aminolevulinate in Acute Porphyrias.
Biochemistry
; 61(21): 2409-2416, 2022 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36241173
7.
On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models.
Bioinformatics
; 36(6): 1986-1988, 2020 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31722383
8.
rMTA: robust metabolic transformation analysis.
Bioinformatics
; 35(21): 4350-4355, 2019 11 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30923806
9.
gMCS: fast computation of genetic minimal cut sets in large networks.
Bioinformatics
; 35(3): 535-537, 2019 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-30052768
10.
Advances in network-based metabolic pathway analysis and gene expression data integration.
Brief Bioinform
; 16(2): 265-79, 2015 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-24626528
11.
Direct calculation of minimal cut sets involving a specific reaction knock-out.
Bioinformatics
; 32(13): 2001-7, 2016 07 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-27153694
12.
Landscape and clinical significance of long noncoding RNAs involved in multiple myeloma expressed fusion transcripts.
Am J Hematol
; 97(3): E113-E117, 2022 03 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-34961980
13.
TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm.
Bioinformatics
; 31(6): 897-904, 2015 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25380956
14.
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data.
Bioinformatics
; 31(11): 1771-9, 2015 Jun 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25618865
15.
Joint analysis of miRNA and mRNA expression data.
Brief Bioinform
; 14(3): 263-78, 2013 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-22692086
16.
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.
Bioinformatics
; 30(15): 2197-203, 2014 Aug 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-24728852
17.
Refining carbon flux paths using atomic trace data.
Bioinformatics
; 30(7): 975-80, 2014 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-24273244
18.
Selection of human tissue-specific elementary flux modes using gene expression data.
Bioinformatics
; 29(16): 2009-16, 2013 Aug 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-23742984
19.
Extending PROXIMAL to predict degradation pathways of phenolic compounds in the human gut microbiota.
NPJ Syst Biol Appl
; 10(1): 56, 2024 May 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-38802371
20.
Bioinformatic progress and applications in metaproteogenomics for bridging the gap between genomic sequences and metabolic functions in microbial communities.
Proteomics
; 13(18-19): 2786-804, 2013 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-23625762