Practices and Applications of Convolutional Neural Network-Based Computer Vision Systems in Animal Farming: A Review.

Convolutional neural network (CNN)-based computer vision systems have been increasingly applied in animal farming to improve animal management, but current knowledge, practices, limitations, and solutions of the applications remain to be expanded and explored. The objective of this study is to systematically review applications of CNN-based computer vision systems on animal farming in terms of the five deep learning computer vision tasks: image classification, object detection, semantic/instance segmentation, pose estimation, and tracking. Cattle, sheep/goats, pigs, and poultry were the major farm animal species of concern. In this research, preparations for system development, including camera settings, inclusion of variations for data recordings, choices of graphics processing units, image preprocessing, and data labeling were summarized. CNN architectures were reviewed based on the computer vision tasks in animal farming. Strategies of algorithm development included distribution of development data, data augmentation, hyperparameter tuning, and selection of evaluation metrics. Judgment of model performance and performance based on architectures were discussed. Besides practices in optimizing CNN-based computer vision systems, system applications were also organized based on year, country, animal species, and purposes. Finally, recommendations on future research were provided to develop and improve CNN-based computer vision systems for improved welfare, environment, engineering, genetics, and management of farm animals.

MINIstock: Model for INsect Inclusion in sustainable agriculture: USDA-ARS's research approach to advancing insect meal development and inclusion in animal diets.

Animal agriculture is under pressure to increase efficiency, sustainability, and innovation to meet the demands of a rising global population while decreasing adverse environmental effects. Feed cost and availability are 2 of the biggest hurdles to sustainable production. Current diets depend on sources of grain and animal byproduct protein for essential amino acids which have limited sustainability. Insects have arisen as an attractive, sustainable alternative protein source for animal diets due to their favorable nutrient composition, low space and water requirements, and natural role in animal diets. Additionally, insects are capable of bioremediating waste streams including agricultural and food waste, manure, and plastics helping to increase their sustainability. The insect rearing industry has grown rapidly in recent years and shows great economic potential. However, state-of-the-art research is urgently needed to overcome barriers to adoption in commercial animal diets such as regulatory restrictions, production scale issues, and food safety concerns. To address this need, the USDA Agricultural Research Service "MINIstoc: Model for INsect Inclusion" project was created to bring together diverse scientists from across the world to synergistically advance insect meal production and inclusion in animal diets. Here, we provide a short review of insects as feed while describing the MINIstock project which serves as the inspiration for the Journal of Economic Entomology Special Collection "Insects as feed: sustainable solutions for food waste and animal production practices."

Effects of the In Ovo Administration of L-ascorbic Acid on the Performance and Incidence of Corneal Erosion in Ross 708 Broilers Subjected to Elevated Levels of Atmospheric Ammonia.

Effects of the in ovo injection of various levels of L-ascorbic acid (L-AA) on the performance and corneal erosion incidence in Ross 708 broilers exposed to 50 parts per million (ppm) of atmospheric ammonia (NH3) after hatch were determined. A total of 1440 Ross 708 broiler embryos were randomly assigned to 4 treatments: non-injected (control), 0.85% sterile saline-injected (control), or saline containing 12 or 25 mg of L-AA. At hatch, 12 male chicks were randomly assigned to each of 48 battery cages with 12 replicate cages randomly assigned to each treatment group. All birds were exposed to 50 ppm of NH3 for 35 d and the concentration of NH3 in the battery cage house was recorded every 20 s. Mortality was determined daily, and mean body weight (BW), BW gain (BWG), average daily BW gain (ADG), and feed intake, as well as feed conversion ratio (FCR), were determined weekly. From 0 to 35 d of post-hatch age (doa), six birds from each cage were selected and sampled for eye erosion scoring. Incidences of corneal erosion were significantly higher at 21 and 28 doa in comparison to those at 14 and 35 doa, and at 21 doa, birds in the saline-injected group exhibited a higher incidence of corneal erosion compared to all other treatment groups. The in ovo injection of 12 mg of L-AA increased BWG (p = 0.043) and ADG (p = 0.041), and decreased FCR (p = 0.043) from 0 to 28 doa in comparison to saline-injected controls. In conclusion the in ovo administration of 12 mg of L-AA may have the potential to improve the live performance of broilers chronically exposed to high aerial NH3 concentrations, but further study is needed to determine the physiological and immunological factors that may contribute to this improvement.

Survival of Escherichia coli in Airborne and Settled Poultry Litter Particles.

Airborne Escherichia coli (E. coli) in the poultry environment can migrate inside and outside houses through air movement. The airborne E. coli, after settling on surfaces, could be re-aerosolized or picked up by vectors (e.g., caretakers, rodents, transport trucks) for further transmission. To assess the impacts of airborne E. coli transmission among poultry farms, understanding the survivability of the bacteria is necessary. The objective of this study is to determine the survivability of airborne E. coli, settled E. coli, and E. coli in poultry litter under laboratory environmental conditions (22-28 °C with relative humidity of 54-63%). To determine the survivability of airborne E. coli, an AGI-30 bioaerosol sampler (AGI-30) was used to collect the E. coli at 0 and 20 min after the aerosolization. The half-life time of airborne E. coli was then determined by comparing the number of colony-forming units (CFUs) of the two samplings. To determine the survivability of settled E. coli, four sterile Petri dishes were placed on the chamber floor right after the aerosolization to collect settled E. coli. The Petri dishes were then divided into two groups, with each group being quantified for culturable E. coli concentrations and dust particle weight at 24-h intervals. The survivability of settled E. coli was then determined by comparing the number of viable E. coli per milligram settled dust collected in the Petri dishes in the two groups. The survivability of E. coli in the poultry litter sample (for aerosolization) was also determined. Results show that the half-life time of airborne E. coli was 5.7 ± 1.2 min. The survivability of E. coli in poultry litter and settled E. coli were much longer with the half-life time of 15.9 ± 1.3 h and 9.6 ± 1.6 h, respectively. In addition, the size distribution of airborne E. coli attached to dust particles and the size distribution of airborne dust particles were measured by using an Andersen impactor and a dust concentration monitor (DustTrak). Results show that most airborne E. coli (98.89% of total E. coli) were carried by the dust particles with aerodynamic diameter larger than 2.1 µm. The findings of this study may help better understand the fate of E. coli transmitted through the air and settled on surfaces and evaluate the impact of airborne transmission in poultry production.

Effect of Ultraviolet Radiation on Reducing Airborne Escherichia coli Carried by Poultry Litter Particles.

Airborne Escherichia coli (E. coli) originating in poultry houses can be transmitted outside poultry farms through the air, posing risks of barn-to-barn infection through airborne transmission. The objective of this study is to examine the effect of ultraviolet (UV) light on the inactivation of airborne E. coli carried by poultry dust particles under laboratory conditions. A system containing two chambers that were connected by a UV scrubber was designed in the study. In the upstream chamber of the system, airborne E. coli attached to dust particles were aerosolized by a dry aerosolization-based system. Two sets of air samplers were placed in the two chambers to collect the viable airborne E. coli. By comparing the concentration of airborne E. coli in the two chambers, the inactivation rates were calculated. The airborne E. coli inactivation rates were tested at different contact times with the aid of a vacuum pump (from 5.62 to 0.23 s of contact time) and different UV irradiance levels (of 1707 µW cm-2 and 3422 µW cm-2). The inactivation rates varied from over 99.87% and 99.95% at 5.62 s of contact time with 1707 µW cm-2 and 3422 µW cm-2 of UV irradiance to 72.90% and 86.60% at 0.23 s of contact time with 1707 µW cm-2 and 3422 µW cm-2 of UV irradiance. The designed system was able to create the average UV irradiation of 1707 µW cm-2 and 3422 µW cm-2 for one UV lamp and two UV lamps, respectively. The findings of this study may provide an understanding of the effect of UV light on the inactivation of airborne E. coli carried by dust particles and help to design an affordable mitigation system for poultry houses.

Effects of ground robot manipulation on hen floor egg reduction, production performance, stress response, bone quality, and behavior.

Reducing floor eggs in cage-free (CF) housing systems is among primary concerns for egg producers. The objective of this research was to evaluate the effects of ground robot manipulation on reduction of floor eggs. In addition, the effects of ground robot manipulation on production performance, stress response, bone quality, and behavior were also investigated. Two successive flocks of 180 Hy-Line Brown hens at 34 weeks of this age were used. The treatment structure for each flock consisted of six pens with three treatments (without robot running, with one-week robot running, and with two-weeks robot running), resulting in two replicates per treatment per flock and four replicates per treatment with two flocks. Two phases were involved with each flock. Phase 1 (weeks 35-38) mimicked the normal scenario, and phase 2 (weeks 40-43) mimicked a scenario after inadvertent restriction to nest box access. Results indicate that the floor egg reduction rate in the first two weeks of phase 1 was 11.0% without the robot treatment, 18.9% with the one-week robot treatment, and 34.0% with the two-week robot treatment. The effect of robot operation on floor egg production was not significant when the two phases of data were included in the analysis. Other tested parameters were similar among the treatments, including hen-day egg production, feed intake, feed conversion ratio, live body weight, plasma corticosterone concentration, bone breaking force, ash percentage, and time spent in nest boxes. In conclusion, ground robot operation in CF settings may help to reduce floor egg production to a certain degree for a short period right after being introduced. Additionally, robot operation does not seem to negatively affect hen production performance and well-being.

Evaluating the Effects of Pine and Miscanthus Biochar on Escherichia coli, Total Aerobic Bacteria, and Bacterial Communities in Commercial Broiler Litter.

Escherichia coli (E. coli) is a commensal bacteria found in the gastrointestinal tract of poultry; however, some strains are pathogenic and can cause a wide range of diseases. In addition, some strains of pathogenic E. coli can survive in the litter between flocks, making litter management critical for reducing E. coli-associated infections. Biochar (BC) is a porous, carbonaceous material that may be a beneficial litter amendment to reduce moisture and microbial loads. The objectives of this study were to evaluate the effects of pine BC, miscanthus BC, and Poultry Litter Treatment (PLT) on E. coli, total aerobic bacteria populations, and bacterial communities when added to used broiler litter. Pine and miscanthus BC were mixed into poultry litter at inclusion rates of 5%, 10%, 20%, 25%, and 30% w/w. PLT was surface applied at a rate of 0.73 kg/m2. Baseline E. coli and aerobics were measured after a 48-hr litter incubation period and just prior to adding litter treatments. Escherichia coli and aerobics were enumerated 2 and 7 days after adding treatments. Overall, pine BC at 30% had the lowest E. coli and aerobic counts (5.98 and 6.44 log 10 colony-forming units [CFU]/g, respectively); however, they were not significantly different from the control (P ≤ 0.05). At day 2, 30% pine BC inclusion rate treatment resulted in a significant reduction in E. coli and aerobic bacteria counts compared to the control. Miscanthus BC application did not result in significant reductions in E. coli or aerobic bacteria at days 2 or 7. PLT had the highest E. coli (7.07 log 10 CFU/g) and aerobic counts (7.21 log 10 CFU/g) overall. Bacterial community analysis revealed that the alpha and beta diversity between pine BC- and PLT-treated litter were significantly different. However, neither BC type significantly impacted bacterial diversity when compared to the control. Differences in E. coli and aerobic counts between BC types may be attributed to variations in feedstock physiochemical properties.

Evaluación de los efectos del biocarbón de pino y de miscanto sobre Escherichia coli, bacterias aerobias totales y comunidades bacterianas en la cama comercial de pollos de engorde. Escherichia coli (E. coli) es una bacteria comensal que se encuentra en el tracto gastrointestinal de las aves comerciales; sin embargo, algunas cepas son patógenas y pueden causar una amplia variedad de enfermedades. Además, algunas cepas de E. coli patógena pueden sobrevivir en la cama entre parvadas, lo que hace que el manejo de la cama sea fundamental para reducir las infecciones asociadas con E. coli. El biocarbón (BC) es un material carbonoso poroso que puede ser un aditivo beneficioso en la cama para reducir la humedad y las cargas microbianas. Los objetivos de este estudio fueron evaluar los efectos del biocarbón de pino, de miscanthus y de un producto comercial para el tratamiento de la cama en avicultura (PLT) sobre E. coli, sobre poblaciones de bacterias aeróbicas totales y comunidades bacterianas cuando se agregan a la cama de pollos de engorde usada. Se mezclaron biocarbón de pino y miscanthus en la cama de aves de corral con tasas de inclusión por peso del 5 %, 10 %, 20 %, 25 % y 30 %. Se aplicó el producto PLT en la superficie a razón de 0.73 kg/m2. La E. coli y los aeróbicos de referencia se midieron después de un período de incubación de la cama de 48 horas y justo antes de agregar los tratamientos de la cama. Se enumeraron Escherichia coli y bacterias aeróbicas 2 y 7 días después de agregar los tratamientos. En general, el biocarbón de pino al 30 % tuvo los recuentos más bajos de E. coli y aeróbicos (5.98 y 6.44 log10 unidades formadoras de colonias [UFC]/g, respectivamente); sin embargo, no fueron significativamente diferentes del control (P ≤ 0.05). En el día 2, el tratamiento con una tasa de inclusión de biocarbón de pino al 30 % dio como resultado una reducción significativa en los recuentos de bacterias aeróbicas y E. coli en comparación con el control. La aplicación de biocarbón de miscanto no resultó en reducciones significativas de E. coli o bacterias aeróbicas en los días 2 o 7. El producto PLT tuvo los recuentos más altos de E. coli (7.07 log10 CFU/g) y aeróbicos en general (7.21 log10 CFU/g). El análisis de la comunidad bacteriana reveló que la diversidad alfa y beta entre la cama tratada con biocarbón de pino y producto PLT era significativamente diferente. Sin embargo, ninguno de los tipos de biocarbón afectó significativamente la diversidad bacteriana en comparación con el control. Las diferencias en los recuentos de E. coli y de bacterias aeróbicas entre los tipos de biocarbón pueden atribuirse a variaciones en las propiedades fisicoquímicas de la materia prima.

Effects of feeder space on broiler feeding behaviors.

Providing adequate feeder space in broiler production is important to ensure bird performance and well-being; however, the effect of feeder space on behavior responses of broilers remains unclear. The objective of this research was to investigate feeding behaviors of broilers provided with 4 feeder spaces, that are 2.3 cm/bird with one feeder (2.3FSO); and 2.3, 4.6, and 6.9 cm/bird with 3 feeders (2.3FST, 4.6FST, and 6.9FST, respectively). Number of feeder slots per feeder was 14 at 2.3FSO, 5 at 2.3FST, 9 at 4.6FST, and 14 at 6.9FST. Sixteen identical pens, each with 45 broilers (Ross 708, mixed sex), were used to accommodate the 4 feeder space treatments. Feeding behaviors were continuously monitored from weeks 4 to 8 using an ultra-high-frequency radio frequency identification system. The results show that the daily feeding time and number of feeder visits for broilers at 2.3FST were similar to those at 4.6FST and 6.9FST but higher than those at 2.3FSO (P < 0.01). The feeder utilization ratio was the highest at 2.3FST, indicating the feeder being used most efficiently among the 4 treatments (P < 0.01). Coefficient of variations (33.0-65.1%) of the feeding behavior responses was similar among the treatments (P ≥ 0.06), suggesting similar group uniformity of feeding behaviors of individual broilers. Feeders among all treatments may not be fully used because for most of the time, less than 6 birds chose to eat simultaneously at a more-than-five-slot feeder in all treatments. Given the same feeder space, increasing feeder number can accommodate more birds to eat simultaneously. The outcomes of this study provide insights into improvement of feeder design and management for broiler production.