ANTIGENIC AND GENETIC CHARACTERIZATION OF INFLUENZA B VIRUSES IN 2012 FROM SLUMS, DHAKA, BANGLADESH.

Nasal and throat swab samples were collected from 400 subjects with influenza-like illness during June to September, 2012 from two heavily crowded slums, Rayerbazar and Hazaribagh, situated southeast of Dhaka, Bangladesh. Forty-one samples were positive for influenza B virus using quantitative RT-PCR, but no influenza A virus was detected. Antigenic characterization revealed that the influenza B viruses were of Yamagata and Victoria lineages, which was confirmed from genetic analysis of hemagglutinin (HA) and neuraminidase (NA) genes. Co-circulation of influenza B viruses of both Yamagata and Victoria lineages in the slums of Dhaka indicates that introduction of a tetravalent vaccine formulation that includes both of these influenza B virus lineages would be more effective in this population.

Arsenic pollution in groundwater: a self-organizing complex geochemical process in the deltaic sedimentary environment, Bangladesh.

The presence of considerable concentrations of As (Sonargon: below detection limit (bdl)-1.46 mg/l; Faridpur: bdl-1.66 mg/l) and some other elements (like B, F, U) in groundwater of the Ganges-Meghna-Brahmaputra (G-M-B) rivers flood plain indicate that several millions of people are consuming contaminated water. Conditions regulating the mobilization and diagenetic behavior of arsenic in sediments are not well characterized, although understanding these conditions is essential in order to predict the modes of transfer of this contaminant from sediments to groundwater. Analyses of vertical profiles of total arsenic and iron as well as easily soluble As and reducible (reactive) iron concentrations in sediments of the Ganges and Meghna flood plains show no arsenic-enriched layer up to 36-m depth. However, arsenic content in sediments is relatively higher than mean crustal concentration, showing some peaks (Sonargaon: 27.9 mg/kg; 3 m, 31.5 mg/kg; 9 m, 27.30 mg/kg; 16 m, 37.70 mg/kg; 29.5 m, Faridpur: 19.80 mg/kg; 6 m, 26.60 mg/kg; 14.5 m, 29.40 mg/kg; 25 m) depending on the periodical differences in sedimentary cycling of arsenic, metal (hydr)oxides and organic matter. Seasonal changes have no clear or consistent effect on the groundwater arsenic concentrations; with the exception of a small-scale localized irregular change (10-16%). However, easily reducible metal oxides and hydroxides were significant factors affecting the retention of arsenic by sediments during leaching. The biogeochemical cycling of arsenic and iron is closely coupled in deltaic systems where iron oxy-hydroxides provide a carrier phase for the deposition of arsenic in sediments. Analytical results of mimic leaching experiments strongly supported the reduction (Fe oxy-hydroxides) mechanism for arsenic mobilization in alluvial aquifer of deltaic sedimentary environment of G-M-B rivers flood plain.

Molecular characterization of the virulent microorganisms along with their drug-resistance traits associated with the export quality frozen shrimps in Bangladesh.

Current investigation characterized export quality shrimp samples in terms of pathogenic load along with the drug-resistance traits of the isolates, and detected the major virulent genes present in those isolates. Among the 30 such shrimp samples (15 each of Macrobrachium rosenbergi or Golda and Penaeus monodon or Bagda) studied, almost all were found to be contaminated with a huge load of bacteria (10(6)-10(8) cfu/g) and fungi (10(4)-10(5) cfu/g). Among the specific pathogens, presence of Escherichia coli, Vibrio spp., Aeromonas spp., Klebsiella spp., Shigella spp., Staphylococcus spp. and Listeria spp. were detected, of which most were likely to be resistant against commonly used antibiotics. Gene specific polymerase chain reaction (PCR) study revealed the presence of eae gene in E. coli, aero specific gene in Aeromonas spp., and sodB gene in Vibrio spp. Together with the huge extent of microbial contamination with a drug-resistance attribute, presence of such virulent genes further projects the probable public health risk upon consumption of the export quality shrimps.