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RNA Biol ; 15(1): 144-155, 2018 01 02.
Artigo em Inglês | MEDLINE | ID: mdl-29099323

RESUMO

Cold adaptation is an evolutionary process that has dramatic impact on enzymatic activity. Increased flexibility of the protein structure represents the main evolutionary strategy for efficient catalysis and reaction rates in the cold, but is achieved at the expense of structural stability. This results in a significant activity-stability tradeoff, as it was observed for several metabolic enzymes. In polymerases, however, not only reaction rates, but also fidelity plays an important role, as these enzymes have to synthesize copies of DNA and RNA as exact as possible. Here, we investigate the effects of cold adaptation on the highly accurate CCA-adding enzyme, an RNA polymerase that uses an internal amino acid motif within the flexible catalytic core as a template to synthesize the CCA triplet at tRNA 3'-ends. As the relative orientation of these residues determines nucleotide selection, we characterized how cold adaptation impacts template reading and fidelity. In a comparative analysis of closely related psychro-, meso-, and thermophilic enzymes, the cold-adapted polymerase shows a remarkable error rate during CCA synthesis in vitro as well as in vivo. Accordingly, CCA-adding activity at low temperatures is not only achieved at the expense of structural stability, but also results in a reduced polymerization fidelity.


Assuntos
RNA Polimerases Dirigidas por DNA/química , RNA Nucleotidiltransferases/química , RNA de Transferência/genética , RNA/química , Adaptação Fisiológica/genética , Motivos de Aminoácidos/genética , Sequência de Aminoácidos/genética , Bacillales/química , Bacillales/genética , Domínio Catalítico/genética , Temperatura Baixa , RNA Polimerases Dirigidas por DNA/genética , Estabilidade Enzimática , Conformação de Ácido Nucleico , Nucleotídeos/genética , RNA/biossíntese , RNA/genética , RNA Nucleotidiltransferases/genética , RNA de Transferência/química , Estresse Fisiológico/genética
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