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1.
J Med Virol ; 89(10): 1811-1816, 2017 10.
Artigo em Inglês | MEDLINE | ID: mdl-28500726

RESUMO

The Brazilian public health system (SUS) has provided antiviral drugs for chronic hepatitis B treatment for over 10 years, but a system for monitoring for drug-related resistance mutations is not available. Determine the presence of HBV mutations associated with resistance to nucleos(t)ide analogs among 81 patients with chronic HBV infection in Salvador-BA-Brazil. HBV-DNA was PCR amplified with primers deduced from the rt domain at the HBV P gene, the sequence extended 1032 bp (from amino acid 1 to 344-rt domain). Those sequences were submitted to the HBV drug resistance database to retrieve each mutation according to the genotype. HBV genotype A1 (85.2%) was the most prevalent, followed by genotype A2 (4.9%), F (6.2%), and C1, D2, and D4 (1.2% each). Six patients (7%) exhibited resistance mutations to LAM, ETV, and TDF: two with patterns L180M + M204V and four with other different patterns: L80I + L180M + M204I; L80V + L180M + M204V; M204I; A194T. All of these mutations were present in patients with genotype A (four A1 and two A2). In addition, four mutations in gene S (three cases with the sI195M mutation and one with the W196L mutation), were detected, corresponding to a rate of 6% of vaccine escape mutations. Althougth the small sample size, an association was found between the occurrence of HBV resistance mutations and HBeAg positivity, co-infection with HIV and a history of treatment for HBV and/or HIV.


Assuntos
Farmacorresistência Viral/genética , Vírus da Hepatite B/efeitos dos fármacos , Vírus da Hepatite B/genética , Hepatite B Crônica/virologia , Adulto , Antivirais/uso terapêutico , Brasil/epidemiologia , Coinfecção/epidemiologia , Coinfecção/virologia , DNA Viral/genética , Genótipo , Vacinas contra Hepatite B , Vírus da Hepatite B/fisiologia , Hepatite B Crônica/tratamento farmacológico , Hepatite B Crônica/epidemiologia , Humanos , Lamivudina/uso terapêutico , Masculino , Pessoa de Meia-Idade , Mutação , Organofosfonatos/uso terapêutico
2.
Sci Rep ; 12(1): 1059, 2022 01 20.
Artigo em Inglês | MEDLINE | ID: mdl-35058485

RESUMO

Patterns of diversity in pathogen genomes provide a window into the spatiotemporal spread of disease. In this study, we tested the hypothesis that Schistosoma mansoni parasites form genetic clusters that coincide with the communities of their human hosts. We also looked for genetic clustering of parasites at the sub-community level. Our data consists of 14 microsatellite DNA markers, typed from pooled DNA samples from [Formula: see text] infected individuals living in three Brazilian communities. We found a one-to-one correspondence between genetic clusters found by K-means cluster analysis and communities when [Formula: see text]. These clusters are also easily identified in a neighbor-joining tree and principal coordinates plots. K-means analysis with [Formula: see text] also reveals genetic clusters of parasites at the sub-community level. These sub-clusters also appear on the neighbor-joining tree and principal coordinates plots. A surprising finding is a genetic relationship between subgroups in widely separated human communities. This connection suggests the existence of common transmission sites that have wide influence. In summary, the genetic structure of S. mansoni in Brazil juxtaposes local isolation that is occasionally broken by long-range migration. Permanent eradication of schistosomes will require both local efforts and the identification of regional infection reservoirs.


Assuntos
Genética Populacional , Schistosoma mansoni/genética , Esquistossomose mansoni/parasitologia , Animais , Brasil , Análise por Conglomerados , Interações Hospedeiro-Parasita/genética , Humanos , Repetições de Microssatélites , Schistosoma mansoni/isolamento & purificação , Esquistossomose mansoni/transmissão
3.
Transbound Emerg Dis ; 69(6): 3153-3159, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-36057790

RESUMO

Schistosomiasis is a tropical neglected disease commonly associated with rural areas; however, urban schistosomiasis has been reported worldwide, and increasing urbanization is one of the most important demographic shifts of the 20th and now 21st centuries. The pattern of urbanization is not uniform so that within the same city the rates and sources of population increase vary. Here, we report on the parasite composition in one neighbourhood in the metropolitan area of Salvador, Bahia, Brazil. Using epidemiological data and population genetics, we find evidence for local transmission and maintenance of Schistosoma mansoni infection within an urban population and little contribution from rural-urban migration. Our findings provide direction for local mitigation strategies and to assist the public living in this neighbourhood to interrupt the local transmission cycle.


Assuntos
Esquistossomose mansoni , Esquistossomose , Animais , Schistosoma mansoni/genética , Brasil/epidemiologia , Esquistossomose/epidemiologia , Esquistossomose/prevenção & controle , Esquistossomose/veterinária , Esquistossomose mansoni/epidemiologia , Esquistossomose mansoni/prevenção & controle , Esquistossomose mansoni/veterinária , População Urbana
4.
Int J Parasitol ; 51(12): 1007-1014, 2021 11.
Artigo em Inglês | MEDLINE | ID: mdl-34022195

RESUMO

All Schistosoma mansoni tri- and tetranucleotide repeat microsatellites published as of December 2018 were identified. All 52 were evaluated for autosomal location, strength of amplification, scorability and behavior as single-copy loci by polyacrylamide and capillary gel electrophoresis. Of these, 27 were unique, autosomal, polymorphic, easily scored and single copy as assessed on pooled adult worm DNA from two different continental origins and adult worm clones. These microsatellites were distributed across all seven autosomal chromosomes. On laboratory strains their heterozygosity ranged from 0.22 to 0.77. Individual markers had 5-13 alleles, allelic richness of 2-10 and an effective allele number of 1.3-8.14. Those infected by Schistosoma mansoni carry many genetically distinct, sexually reproducing parasites, therefore, for an individual infection the complete allele frequency profile of their progeny consists of a pool of DNA from multiple diploid eggs. Using a set of 25 microsatellites, we calculated allele frequency profiles of eggs in fecal samples from people in two Brazilian communities separated by 6 km: Jenipapo (n = 80) and Volta do Rio (n = 38). There were no a priori characteristics that could predict the performance of markers in natural infections based on their performance with laboratory strains. Increasing marker number did not change accuracy for differentiation and diversity but did improve precision. Our data suggest that using a random set of 10-20 microsatellites appears to result in values that exhibit low standard deviations for diversity and differentiation indices. All identified microsatellites as well as PCR conditions, allele size, primer sequences and references for all tri- and tetramer microsatellites markers presented in this work are available at: https://sites.google.com/case.edu/cwru-and-fiocruz-wdrc/home.


Assuntos
Variação Genética , Schistosoma mansoni , Animais , Frequência do Gene , Genética Populacional , Humanos , Repetições de Microssatélites , Schistosoma mansoni/genética
5.
Mem Inst Oswaldo Cruz ; 105(3): 299-303, 2010 May.
Artigo em Inglês | MEDLINE | ID: mdl-20512243

RESUMO

Hepatitis C virus (HCV) is the major infectious disease agent among injecting drug users (IDUs), with seroprevalence ranging from 50-90%. In this paper, serological and virological parameters were investigated among 194 IDUs, 94 ex-IDUs and 95 non-IDUs that were sampled by the "snowball" technique in three localities renowned for both intense drug use and trafficking activities in Salvador, Brazil. The majority of the participants were male, but sex and mean age differed significantly between IDUs/ex-IDUs and non-IDUs (p < 0.05). Anti-HCV screening revealed that 35.6%, 29.8% and 5.3% of samples from IDUs, ex-IDUs and non-IDUs, respectively, were seropositive. HCV-RNA detection confirmed that the prevalence of infection was 29.4%, 21.3% and 5.3% for IDUs, ex-IDUs and non-IDUs, respectively. Genotyping analysis among IDUs/ex-IDUs determined that 76.9% were infected with genotype 1, 18.5% with genotype 3 and 4.6% with a mixed genotype; this result differed significantly from non-IDUs, where genotype 3 was the most frequent (60%), followed by genotype 1 (20%) and a mixed genotype (20%). We report a significantly higher prevalence of HCV infection in IDUs/ex-IDUs compared to the control group (p < 0.001). Although the sample size of our study was small, the differences in HCV genotype distribution reported herein for IDUs/ex-IDUs and non-IDUs warrant further investigation.


Assuntos
Hepacivirus/genética , Anticorpos Anti-Hepatite C/sangue , Hepatite C/epidemiologia , RNA Viral/sangue , Abuso de Substâncias por Via Intravenosa/epidemiologia , Adulto , Brasil/epidemiologia , Estudos de Casos e Controles , Feminino , Genótipo , Hepacivirus/imunologia , Hepatite C/virologia , Humanos , Masculino , Prevalência , RNA Viral/genética , Estudos Soroepidemiológicos , Abuso de Substâncias por Via Intravenosa/complicações
6.
Int J Parasitol ; 50(1): 27-34, 2020 01.
Artigo em Inglês | MEDLINE | ID: mdl-31783024

RESUMO

Since 2007, most of humanity resides in urban areas, a trend which continues worldwide. Diseases usually associated with rural contexts are now emerging or newly recognised in cities. In the neighbourhood of São Bartolomeu in Salvador, Brazil, the prevalence of Schistosoma mansoni infection in 2011 was >20%. Following enrollment and treatment of a portion of the community, ~25% of the area underwent urban renewal. In 2015, we returned to enrol individuals who had previously participated and a cohort that had not taken part in 2011. Thus, infected individuals in one group experienced specific drug treatment plus improved living conditions and the second group only improved living conditions. Between 2011 and 2015 there were no organised treatment programs, but adequate sanitation increased from 69% to 92% coverage, household flooding decreased, and the presence of indoor toilets increased to 99% of households. Ownership of household appliances also increased significantly. The overall prevalence of schistosome infections was 6.2%. In 2015, the cohort first seen in 2011 had a higher prevalence (8.7%) than those first seen in 2015 (4.8%) and showed a few demographic differences. The 2011 cohort was older, more likely born in Salvador, less likely to have lived outside of Salvador, spent a greater percentage of their lifetime in Salvador, but more likely to have travelled. The population structure of the parasites from both cohorts underwent a marked change with similar increased component and infrapopulation differentiation and >10 fold decrease in effective population size. There was a 4-5 year shift in age-specific prevalence in 2015 for all compared with 2011. While praziquantel may have helped reduce prevalence, our evidence suggests that the structural changes and improvements in living conditions had the biggest impact on schistosomiasis in this community.


Assuntos
Esquistossomose mansoni/epidemiologia , Urbanização/tendências , Adolescente , Adulto , Animais , Brasil/epidemiologia , Criança , Estudos de Coortes , Feminino , Humanos , Estudos Longitudinais , Masculino , Pessoa de Meia-Idade , Praziquantel/uso terapêutico , Prevalência , População Rural , Saneamento , Schistosoma mansoni/parasitologia , Esquistossomose mansoni/tratamento farmacológico , Esquistossomose mansoni/transmissão , População Urbana , Adulto Jovem
7.
Immunobiology ; 224(4): 595-603, 2019 07.
Artigo em Inglês | MEDLINE | ID: mdl-30962033

RESUMO

In this study, we evaluated serum markers of immune responses in children infected with G. duodenalis and compared them with the characterized parasite isolates. The reactivity indexes (RI) of IgG (1.503 ± 0.819) and IgA (2.308 ± 1.935) antibodies were significantly higher (P < 0.001) in infected children than in non-infected children. There were also statistically significantly higher serum levels (P < 0.05) of IFN-γ (393.10 ± 983.90 pg/mL) as well as serum (30.03 ± 10.92 µmol/L) and saliva nitric oxid derivatives (NOx) (192.4 ± 151.2 µmol/L) in children infected with G. duodenalis compared to the group of non-parasitized children (127.4 ± 274.30 pg/mL; 25.82 ± 7.74 µmol/L and 122.5 ± 105.90 µmol/L, respectively). Regarding the characterized genetic variants of G. duodenalis and the immune response profiles, no differences were observed in terms of antibody reactivity or levels of serum cytokine and NOx among children infected with AI or AII subassemblages. The elevated levels of IFN-γ and NOx indicate that G. duodenalis intestinal infection in humans induces a cellular immune response detectable at the systemic level. Moreover, no significant differences in the antibody reactivity profile or the cytokine and NOx production in the sera of children infected with AI or AII G. duodenalis variants were observed, suggesting that subtypes of the parasite do not influence the immune response profile.


Assuntos
Biomarcadores/sangue , Giardia lamblia/imunologia , Giardíase/imunologia , Giardíase/parasitologia , Interações Hospedeiro-Parasita/imunologia , Adolescente , Anticorpos Antiprotozoários/sangue , Anticorpos Antiprotozoários/imunologia , Criança , Pré-Escolar , Estudos Transversais , Citocinas/sangue , Feminino , Genótipo , Giardia lamblia/classificação , Giardia lamblia/genética , Humanos , Lactente , Recém-Nascido , Masculino , Tipagem Molecular
8.
Eur J Hum Genet ; 16(6): 762-5, 2008 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-18270538

RESUMO

To test whether African ancestry is protective for severe dengue, we genotyped 49 hospitalized cases of dengue hemorrhagic fever (DHF) as well as 293 neighborhood cases of dengue fever and 294 asymptomatic controls in Salvador, Bahia, Brazil. Ancestry-informative markers and 282 unlinked SNPs not associated with the clinical presentation of dengue were used to estimate ancestry. After controlling for income, both self-defined Afro-Brazilian ethnicity and African ancestry were protective for DHF (P=0.02, OR=0.28 and P=0.02, OR=0.13, respectively). Income or an index of income indicators, however, was also independently associated with the diagnosis of DHF.


Assuntos
Dengue/genética , Renda , População Negra/genética , Brasil , Genótipo , Humanos
9.
Int J Parasitol ; 48(14): 1149-1154, 2018 12.
Artigo em Inglês | MEDLINE | ID: mdl-30367861

RESUMO

Eradication or local extinction of the human parasite Schistosoma mansoni is a goal for many control programs. Population genetic analyses are helping to evaluate and guide these efforts, yet what to sample, how to sample and how densely to sample is not well established. We determined the S. mansoni allele frequency profile of nearly all infected inhabitants in two small Brazilian communities and created sub-samples representing 5-50% of all detected human infections (infrapopulations). Samples were selected at random with replacement, and each size class was replicated 100 times. Mean pairwise differentiation for all infrapopulations (Di) and the variance effective population size (Ne) were calculated for each sample. Prior to community-wide treatment, the true mean Di was moderate (0.095-0.123) and Ne large (>30,000). Most samples of <50% of those infected produced estimates outside of 5% of the true value. For estimates within 10%, sample sizes of >15% of all infrapopulations were required. At the 3 year follow-up after treatment, the Di increased and Ne was reduced by >15 fold. At this time sampling of >30-45% was needed to achieve the same accuracy. Following a second treatment and 4 years from baseline, the Di further increased and Ne decreased with little change in the sampling effort required. Extensive sampling is required for accurate estimates of these important population parameters. Characteristics such as population census size, infection prevalence, the community's treatment history and the degree of infrapopulation differentiation should be taken into account. The intensity of infection was weakly correlated with the ability of a single infrapopulation to represent the component population (Dic), indicating a tendency toward random acquisition of parasite genotypes. This also suggests that targeted sampling from those most heavily infected will better represent the genetic diversity of the whole community than a random sample of infrapopulations.


Assuntos
Schistosoma mansoni/genética , Esquistossomose mansoni/parasitologia , Animais , Brasil/epidemiologia , Variação Genética , Genótipo , Humanos , Repetições de Microssatélites , Tamanho da Amostra , Esquistossomose mansoni/epidemiologia
10.
PLoS One ; 13(12): e0209036, 2018.
Artigo em Inglês | MEDLINE | ID: mdl-30557319

RESUMO

BACKGROUND: Carriers of the sickle cell trait (HbAS) usually remain asymptomatic. However, under conditions of low tissue oxygenation, red blood cell sickling and vascular obstruction may develop. Chronic kidney disease (CKD) can arise from conditions promoting low-oxygen in kidney tissue, which may be aggravated by the presence of the sickle cell trait. In addition, CKD can arise from other genetic traits. AIM: To compare the frequency of HbAS among hemodialysis patients and the general newborn population of Salvador (Bahia-Brazil), as well as to investigate the frequencies of apolipoprotein L1 risk variants in patients undergoing hemodialysis. METHODS: A cross-sectional study included 306 patients with ESRD (End Stage Renal Disease) on hemodialysis for no more than three years. Hemoglobin profiles were characterized by high-performance liquid chromatography. To estimate the sickle cell trait frequency in the general population of Salvador, we analyzed data collected by a local neonatal screening program between 2011 and 2016. To exclude the potential contributing effect of the apolipoprotein L1 (APOL1) gene variants, we performed genotyping by PCR and DNA sequencing of 45 patients. RESULTS: The frequency of HbAS was significantly higher in hemodialysis patients (9.8%) than in the general population (4.6%): Odds Ratio = 2.32 (95% CI = 1.59-3.38). No differences in demographic, clinical or laboratory data were found among patients with or without the sickle cell trait. The frequency of patients with none, one or two APOL1 risk haplotypes (G1 and G2) for CKD were 80%, 18% and 2%, respectively. CONCLUSIONS: The frequency of the sickle cell trait is higher in patients with ESRD on hemodialysis compared to the general population. APOL1 haplotypes do not seem to be the determinant of ESRD in these patients.


Assuntos
Falência Renal Crônica/complicações , Traço Falciforme/complicações , Traço Falciforme/epidemiologia , Apolipoproteína L1/genética , Brasil/epidemiologia , Feminino , Humanos , Recém-Nascido , Falência Renal Crônica/terapia , Masculino , Pessoa de Meia-Idade , Diálise Renal , Traço Falciforme/genética
11.
Trans R Soc Trop Med Hyg ; 100(7): 663-8, 2006 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-16386279

RESUMO

In general, the prevalence and genotype distribution of hepatitis C virus (HCV) are estimated based on the ambulatory clinic or hospital population. In the present work, a population-based study was conducted to estimate the prevalence of HCV infection in Salvador, Brazil. A total of 1308 serum samples were collected from 30 "sentinel areas", and the prevalence of HCV infection was determined by ELISA and confirmed by recombinant immunoblot assay and RT-PCR. The overall prevalence of HCV infection was 1.5% (20/1308). Prevalence was greater among those aged 35 years or older and those with more education. Genotype 3 was the most common (53.3%), followed by genotypes 1 (40%) and 2 (6.7%). These observations are different from those found in a prior survey of hospital and ambulatory patients in Salvador, who were most frequently infected with genotype 1, followed by genotypes 3 and 2, respectively.


Assuntos
Hepatite C/epidemiologia , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Anticorpos Antivirais/sangue , Brasil/epidemiologia , Criança , Pré-Escolar , Ensaio de Imunoadsorção Enzimática/métodos , Feminino , Genótipo , Hepacivirus/genética , Hepatite C/genética , Hepatite C/imunologia , Humanos , Immunoblotting/métodos , Lactente , Masculino , Pessoa de Meia-Idade , Vigilância da População/métodos , Prevalência , RNA Viral/análise , Estudos Retrospectivos , Estudos Soroepidemiológicos , Saúde da População Urbana
12.
Int J Parasitol ; 46(5-6): 343-50, 2016 05.
Artigo em Inglês | MEDLINE | ID: mdl-26953255

RESUMO

Repeated treatments with praziquantel reduce schistosomiasis prevalence and morbidity, but transmission persists and populations often recover within a few years. To identify factors associated with persistence, we surveyed and treated all identified Schistosoma mansoni infections in two rural Brazilian communities (Jenipapo and Volta do Rio) in 2009, 2012 and 2013. Eggs were collected from all infected individuals and genotyped with 11 microsatellite markers to evaluate parasite differentiation and diversity. After successive rounds of community-wide treatment, prevalence decreased from 45% to 24% then 16%. Intensity of infection decreased by 57% over this period, and the number of eggs transmitted to the environment decreased by 92%. During all time periods the majority of eggs were excreted by those >15years of age. The incidence was 23% in 2012 and 15% in 2013, consistent with a decrease in transmission. There was little immigration or gene flow over a distance of 6km. On reinfection, infrapopulations were moderately differentiated indicating that pretreatment multilocus genotypes were not fully reacquired. The effective population size responded to census population decline more rapidly than differentiation. Reinfection was concentrated in the downstream portion of Jenipapo, consistent with the observed increased human fecal contamination. At this scale and in this area S. mansoni infections exist on a fragmented landscape with a highly focal pattern of transmission that may facilitate future elimination.


Assuntos
Anti-Helmínticos/administração & dosagem , Praziquantel/administração & dosagem , Schistosoma mansoni/efeitos dos fármacos , Esquistossomose mansoni/tratamento farmacológico , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Animais , Anti-Helmínticos/farmacologia , Anti-Helmínticos/uso terapêutico , Brasil/epidemiologia , Criança , Pré-Escolar , Fezes/parasitologia , Feminino , Frequência do Gene , Técnicas de Genotipagem , Humanos , Incidência , Lactente , Estudos Longitudinais , Masculino , Repetições de Microssatélites , Pessoa de Meia-Idade , Contagem de Ovos de Parasitas , Praziquantel/farmacologia , Praziquantel/uso terapêutico , Prevalência , Fatores de Risco , População Rural , Schistosoma mansoni/classificação , Schistosoma mansoni/genética , Esquistossomose mansoni/epidemiologia , Esquistossomose mansoni/transmissão , Adulto Jovem
13.
PLoS Negl Trop Dis ; 9(3): e0003521, 2015 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-25775457

RESUMO

Urbanization is increasing across the globe, and diseases once considered rural can now be found in urban areas due to the migration of populations from rural endemic areas, local transmission within the city, or a combination of factors. We investigated the epidemiologic characteristics of urban immigrants and natives living in a neighborhood of Salvador, Brazil where there is a focus of transmission of Schistosoma mansoni. In a cross-sectional study, all inhabitants from 3 sections of the community were interviewed and examined. In order to determine the degree of parasite differentiation between immigrants and the native born, S. mansoni eggs from stools were genotyped for 15 microsatellite markers. The area received migrants from all over the state, but most infected children had never been outside of the city, and infected snails were present at water contact sites. Other epidemiologic features suggested immigration contributed little to the presence of infection. The intensity and prevalence of infection were the same for immigrants and natives when adjusted for age, and length of immigrant residence in the community was positively associated with prevalence of infection. The population structure of the parasites also supported that the contribution from immigration was small, since the host-to-host differentiation was no greater in the urban parasite population than a rural population with little distant immigration, and there had been little differentiation in the urban population over the past 7 years. Public health efforts should focus on eliminating local transmission, and once eliminated, reintroduction from distant migration is unlikely.


Assuntos
Emigração e Imigração , Esquistossomose/epidemiologia , Adulto , Animais , Brasil/epidemiologia , Estudos Transversais , Fezes/parasitologia , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Prevalência , Schistosoma mansoni/genética , Esquistossomose/etiologia , População Urbana
14.
PLoS Negl Trop Dis ; 7(12): e2572, 2013.
Artigo em Inglês | MEDLINE | ID: mdl-24340115

RESUMO

BACKGROUND: Brazil remains the country in the Americas with the highest prevalence of schistosomiasis. A combination of control efforts and development, however, has sharply reduced its intensity and distribution. The acquisition of specific schistosome populations may be dependent on host characteristics such as sex, age, geography, work, habits and culture. How these and other host characteristics align with parasite subpopulations may guide approaches to improve control. METHODOLOGY: A cohort of more than 90% of the residents in two rural communities in Brazil participated in an epidemiologic survey of demographic, socio-economic and behavioral characteristics. The variables sex, age, intensity of infection, socio-economic index, % lifetime spent on site, previous infection, and trips outside the district were used to group parasites infecting individuals. Schistosoma mansoni infection status was determined by examination of stools submitted on 3 different days. The aggregate of eggs collected from the whole stool was used to determine degree of population differentiation from allele frequencies for 15 microsatellites. CONCLUSIONS/SIGNIFICANCE: Infection prevalence was 41% for these communities, and the epidemiologic characteristics were similar to many of the endemic areas of Brazil and the world. Parasite population structuring was observed between the two communities (Jost's D 0.046, CI95% 0.042-0.051), although separated by only 8 km and connected by a highway. No structuring was observed when infected individuals were stratified by host's biologic, demographic or epidemiologic characteristics. Those most heavily infected best reflected the communities' overall parasite diversity. The lack of differentiation within villages suggests that individuals are likely to get infected at the same sites or that the same parasite multilocus genotypes can be found at most sites. The geographic structuring between villages and the lack of structuring by age of the host further supports the impression of a population little affected by migration or drift.


Assuntos
Variação Genética , Schistosoma mansoni/classificação , Schistosoma mansoni/isolamento & purificação , Esquistossomose mansoni/epidemiologia , Esquistossomose mansoni/parasitologia , Adolescente , Adulto , Animais , Brasil , Criança , Pré-Escolar , Fezes/parasitologia , Feminino , Frequência do Gene , Genótipo , Humanos , Lactente , Estilo de Vida , Masculino , Repetições de Microssatélites , Pessoa de Meia-Idade , Prevalência , População Rural , Schistosoma mansoni/genética , Adulto Jovem
15.
Acta Trop ; 128(3): 598-605, 2013 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-24028791

RESUMO

In order to evaluate subpopulation differentiation, effective population size (Ne) and evidence for population bottlenecks at various geographic levels, Aedes aegypti larvae were collected longitudinally from 2007 to 2009 from four areas in the city of Salvador, Brazil. The DNA from each larva was isolated and genotyped with five independent microsatellite markers. FST and Jost's D revealed significant population structuring (P<0.05) at the municipal and regional levels, while only RST was able to detect genetic differentiation at the level of strata within these areas. Ne analysis from longitudinal data did not show any evidence of significant change in population structure. The census population measured by the house index, however, showed a significant trend toward decrease in these areas. Active vector control measures did contribute to vector reduction, but this was not enough to decrease A. aegypti population genetic diversity in Salvador. The understanding of A. aegypti population dynamics may be helpful for planning and evaluation of control measures to make them more effective.


Assuntos
Aedes/efeitos dos fármacos , Aedes/genética , Estruturas Genéticas , Controle de Mosquitos/métodos , Controle Biológico de Vetores/métodos , Aedes/classificação , Animais , Brasil , Cidades , Variação Genética , Técnicas de Genotipagem , Estudos Longitudinais , Repetições de Microssatélites
16.
Int J Parasitol ; 41(10): 1093-9, 2011 Aug 15.
Artigo em Inglês | MEDLINE | ID: mdl-21784077

RESUMO

Praziquantel has been used to treat schistosome infections since 1979 and currently is the only chemotherapeutic agent in production for this purpose, raising concerns about the potential for the emergence of drug resistance. In practice, 10-20% of infected patients will continue to excrete eggs after treatment. It is not understood to what degree this represents selection of a resistant population or incomplete elimination due to the presence of immature worms at the time of treatment. We used a population genetics approach to test whether or not persistent Schistosomamansoni parasites were drawn from the same population as susceptible parasites. In this study, stool samples were collected from 96% of individuals in two small Brazilian communities (populations 482 and 367) and examined for S.mansoni eggs. The combined prevalence of S.mansoni infections in the villages was 41%. Total egg DNA was extracted from each sample and was genotyped at 15 microsatellite markers. Day-to-day variation of the infrapopulation from an individual human host was low (median differentiation using Jost's D=0.010), so that a single stool was representative of the genotypes present in stool eggs, at least in the short term. Average pairwise analysis of D among all pre-treatment infrapopulations suggested moderate differentiation (mean D=0.082 and 0.122 for the two villages), whereas the pre-treatment component population differentiation between the two communities was 0.047. The differentiation of the component population remaining after treatment from the fully susceptible component population was low (mean D=0.007 and 0.020 for the two villages), suggesting that the persistent parasites were not selected by praziquantel treatment. We will continue to follow these communities for evidence of selection or changes in population structure.


Assuntos
Anti-Helmínticos/administração & dosagem , Resistência a Medicamentos , Praziquantel/administração & dosagem , Schistosoma mansoni/classificação , Schistosoma mansoni/efeitos dos fármacos , Esquistossomose mansoni/tratamento farmacológico , Seleção Genética , Adolescente , Adulto , Idoso , Idoso de 80 Anos ou mais , Animais , Brasil , Criança , Pré-Escolar , Fezes/parasitologia , Feminino , Genótipo , Humanos , Lactente , Masculino , Repetições de Microssatélites , Pessoa de Meia-Idade , Schistosoma mansoni/genética , Schistosoma mansoni/isolamento & purificação , Adulto Jovem
17.
Eur J Hum Genet ; 18(11): 1221-7, 2010 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-20588308

RESUMO

To identify genes associated with the clinical presentation of dengue, 50 cases of probable or possible dengue hemorrhagic fever (DHF), 236 dengue fever (DF), and 236 asymptomatic infections were genotyped for 593 single-nucleotide polymorphisms (SNPs) in 56 genes across the type 1 interferon (IFN) response pathway as well as other important candidate genes. By single locus analysis comparing DHF with DF, 11 of the 51 markers with P<0.05 were in the JAK1 gene. Five markers were significantly associated by false discovery rate criteria (q<0.20 when P<6 × 10(-4)). The JAK1 SNPs showed differential distribution by ethnicity and ancestry consistent with epidemiologic observations in the Americas. The association remained significant after controlling for ancestry and income. No association was observed with markers in the gene encoding CD209 (DC-SIGN). An association between DHF and JAK1 polymorphisms is in agreement with expression profiles showing generalized decreased type 1 IFN-stimulated gene expression in these patients.


Assuntos
Predisposição Genética para Doença/genética , Janus Quinase 1/genética , Polimorfismo de Nucleotídeo Único , Dengue Grave/genética , Adolescente , Adulto , População Negra/genética , Brasil/epidemiologia , Criança , Feminino , Frequência do Gene , Genótipo , Haplótipos , Humanos , Indígenas Sul-Americanos/genética , Masculino , Dengue Grave/etnologia , População Branca/genética , Adulto Jovem
18.
J Parasitol ; 95(4): 881-9, 2009 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-20049994

RESUMO

Many parasite populations are difficult to sample because they are not uniformly distributed between several host species and are often not easily collected from the living host, thereby limiting sample size and possibly distorting the representation of the population. For the parasite Schistosoma mansoni, we investigated the use of eggs, in aggregate, from the stools of infected individuals as a simple and representative sample. Previously, we demonstrated that microsatellite allele frequencies can be accurately estimated from pooled DNA of cloned S. mansoni adults. Here, we show that genotyping of parasite populations from reproductively isolated laboratory strains can be used to identify these specific populations based on characteristic patterns of allele frequencies, as observed by polyacrylamide gel electrophoresis and automated sequencer analysis of fluorescently labeled PCR products. Microsatellites used to genotype aggregates of eggs collected from stools of infected individuals produced results consistent with the geographic distribution of the samples. Preferential amplification of smaller alleles, and stutter PCR products, had negligible effect on measurement of genetic differentiation. Direct analysis of total stool eggs can be an important approach to questions of population genetics for this parasite by increasing the sample size to thousands per infected individual and by reducing bias.


Assuntos
DNA de Helmintos/química , Fezes/parasitologia , Repetições de Microssatélites/genética , Schistosoma mansoni/isolamento & purificação , Esquistossomose mansoni/parasitologia , Animais , Brasil , Eletroforese em Gel de Poliacrilamida , Feminino , Frequência do Gene , Genótipo , Humanos , Quênia , Masculino , Óvulo , Reação em Cadeia da Polimerase , Schistosoma mansoni/classificação , Schistosoma mansoni/genética , Análise de Sequência
19.
Mem. Inst. Oswaldo Cruz ; 105(3): 299-303, May 2010. tab
Artigo em Inglês | LILACS | ID: lil-547300

RESUMO

Hepatitis C virus (HCV) is the major infectious disease agent among injecting drug users (IDUs), with seroprevalence ranging from 50-90 percent. In this paper, serological and virological parameters were investigated among 194 IDUs, 94 ex-IDUs and 95 non-IDUs that were sampled by the "snowball" technique in three localities renowned for both intense drug use and trafficking activities in Salvador, Brazil. The majority of the participants were male, but sex and mean age differed significantly between IDUs/ex-IDUs and non-IDUs (p < 0.05). Anti-HCV screening revealed that 35.6 percent, 29.8 percent and 5.3 percent of samples from IDUs, ex-IDUs and non-IDUs, respectively, were seropositive. HCV-RNA detection confirmed that the prevalence of infection was 29.4 percent, 21.3 percent and 5.3 percent for IDUs, ex-IDUs and non-IDUs, respectively. Genotyping analysis among IDUs/ex-IDUs determined that 76.9 percent were infected with genotype 1, 18.5 percent with genotype 3 and 4.6 percent with a mixed genotype; this result differed significantly from non-IDUs, where genotype 3 was the most frequent (60 percent), followed by genotype 1 (20 percent) and a mixed genotype (20 percent). We report a significantly higher prevalence of HCV infection in IDUs/ex-IDUs compared to the control group (p < 0.001). Although the sample size of our study was small, the differences in HCV genotype distribution reported herein for IDUs/ex-IDUs and non-IDUs warrant further investigation.


Assuntos
Adulto , Feminino , Humanos , Masculino , Hepacivirus/genética , Anticorpos Anti-Hepatite C/sangue , Hepatite C/epidemiologia , RNA Viral/sangue , Abuso de Substâncias por Via Intravenosa/epidemiologia , Brasil/epidemiologia , Estudos de Casos e Controles , Genótipo , Hepacivirus/imunologia , Hepatite C/virologia , Prevalência , RNA Viral/genética , Estudos Soroepidemiológicos , Abuso de Substâncias por Via Intravenosa/complicações
20.
J Infect Dis ; 185(11): 1644-9, 2002 Jun 01.
Artigo em Inglês | MEDLINE | ID: mdl-12023771

RESUMO

Two populations with differing histories of Schistosoma mansoni and hepatitis C infection were compared directly for severity of disease and extent of comorbidity. Demographic, parasitologic, and ultrasound surveys were conducted on 2038 Egyptians and on 2120 Kenyans. Hepatitis B and C serologies and transaminase levels were obtained from a subset at each site. Despite significantly lower prevalence and intensity of infection, Egyptians had a higher prevalence of severe schistosomal fibrosis than Kenyans (36.8% vs. 4.6%). Hepatitis C infection was 3 times more prevalent among Egyptians, and evidence of hepatocellular damage was significantly greater among Egyptians. There was no interaction between S. mansoni infection or disease and the prevalence or severity of hepatitis C. For both infections, the intensity or prevalence of infection was a poor predictor of morbidity. The prevalence of disease in the Egyptian population from different pathogens suggests a generalized susceptibility to inflammatory liver disease.


Assuntos
Hepatite C/epidemiologia , Vigilância da População , Esquistossomose mansoni/epidemiologia , Índice de Gravidade de Doença , Adolescente , Adulto , Animais , Criança , Comorbidade , Egito/epidemiologia , Feminino , Hepacivirus/patogenicidade , Hepatite C/diagnóstico por imagem , Humanos , Quênia/epidemiologia , Fígado/diagnóstico por imagem , Masculino , Pessoa de Meia-Idade , Schistosoma mansoni/patogenicidade , Esquistossomose mansoni/diagnóstico por imagem , Ultrassonografia
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