Detalhe da pesquisa
1.
Cistrome Data Browser: integrated search, analysis and visualization of chromatin data.
Nucleic Acids Res
; 52(D1): D61-D66, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37971305
2.
Mechanisms of response and resistance to combined decitabine and ipilimumab for advanced myeloid disease.
Blood
; 141(15): 1817-1830, 2023 04 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-36706355
3.
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.
Bioinformatics
; 39(2)2023 02 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-36688700
4.
Subependymal giant cell astrocytomas are characterized by mTORC1 hyperactivation, a very low somatic mutation rate, and a unique gene expression profile.
Mod Pathol
; 34(2): 264-279, 2021 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33051600
5.
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.
Nucleic Acids Res
; 45(D1): D658-D662, 2017 01 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-27789702
6.
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.
BMC Bioinformatics
; 19(1): 135, 2018 04 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-29649993
7.
NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers.
Proc Natl Acad Sci U S A
; 111(2): 705-10, 2014 Jan 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-24374627
8.
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.
BMC Bioinformatics
; 17(1): 404, 2016 Oct 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-27716038
9.
CistromeFinder for ChIP-seq and DNase-seq data reuse.
Bioinformatics
; 29(10): 1352-4, 2013 May 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-23508969
10.
Multi-omics Analysis Reveals Immune Features Associated with Immunotherapy Benefit in Patients with Squamous Cell Lung Cancer from Phase III Lung-MAP S1400I Trial.
Clin Cancer Res
; 30(8): 1655-1668, 2024 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-38277235
11.
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human.
Bioinformatics
; 28(10): 1411-2, 2012 May 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-22495751
12.
Tutorial: integrative computational analysis of bulk RNA-sequencing data to characterize tumor immunity using RIMA.
Nat Protoc
; 18(8): 2404-2414, 2023 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-37391666
13.
Liquid biopsy epigenomic profiling for cancer subtyping.
Nat Med
; 29(11): 2737-2741, 2023 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-37865722
14.
CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis.
Genomics Proteomics Bioinformatics
; 19(4): 652-661, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34284136
15.
CDK4/6 inhibition reprograms the breast cancer enhancer landscape by stimulating AP-1 transcriptional activity.
Nat Cancer
; 2(1): 34-48, 2021 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-33997789
16.
Cross-Site Concordance Evaluation of Tumor DNA and RNA Sequencing Platforms for the CIMAC-CIDC Network.
Clin Cancer Res
; 27(18): 5049-5061, 2021 09 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-33323402
17.
FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissues.
Nat Protoc
; 15(8): 2503-2518, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32591768
18.
Author Correction: Liquid biopsy epigenomic profiling for cancer subtyping.
Nat Med
; 30(3): 907, 2024 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-38049623
19.
Transcriptional Regulator CNOT3 Defines an Aggressive Colorectal Cancer Subtype.
Cancer Res
; 77(3): 766-779, 2017 02 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-27899379
20.
Genome-wide identification and characterization of Notch transcription complex-binding sequence-paired sites in leukemia cells.
Sci Signal
; 10(477)2017 May 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-28465412