Detalhe da pesquisa
1.
Enhanced sampling of protein conformational states for dynamic cross-docking within the protein-protein docking server SwarmDock.
Proteins
; 88(8): 962-972, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-31697436
2.
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.
Bioinformatics
; 33(12): 1806-1813, 2017 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28200016
3.
Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
Proteins
; 84 Suppl 1: 323-48, 2016 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-27122118
4.
SwarmDock: a server for flexible protein-protein docking.
Bioinformatics
; 29(6): 807-9, 2013 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-23343604
5.
Characterizing changes in the rate of protein-protein dissociation upon interface mutation using hotspot energy and organization.
PLoS Comput Biol
; 9(9): e1003216, 2013.
Artigo
em Inglês
| MEDLINE | ID: mdl-24039569
6.
The scoring of poses in protein-protein docking: current capabilities and future directions.
BMC Bioinformatics
; 14: 286, 2013 Oct 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-24079540
7.
A Markov-chain model description of binding funnels to enhance the ranking of docked solutions.
Proteins
; 81(12): 2143-9, 2013 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-23900714
8.
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
Proteins
; 81(11): 1980-7, 2013 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-23843247
9.
Why 6-Iodouridine Cannot Be Used as a Radiosensitizer of DNA Damage? Computational and Experimental Studies.
J Phys Chem B
; 127(11): 2565-2574, 2023 03 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-36893332
10.
A Guide for Protein-Protein Docking Using SwarmDock.
Methods Mol Biol
; 2165: 199-216, 2020.
Artigo
em Inglês
| MEDLINE | ID: mdl-32621226
11.
Underdamped vibrations control the primary electron transfer in photosynthesis at low temperatures.
J Phys Chem B
; 112(20): 6508-12, 2008 May 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-18422356
12.
Updates to the Integrated Protein-Protein Interaction Benchmarks: Docking Benchmark Version 5 and Affinity Benchmark Version 2.
J Mol Biol
; 427(19): 3031-41, 2015 Sep 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-26231283
13.
Predicting the structure of protein-protein complexes using the SwarmDock Web Server.
Methods Mol Biol
; 1137: 181-97, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-24573482
14.
Output-input ratio in thermally fluctuating biomolecular machines.
Phys Rev E Stat Nonlin Soft Matter Phys
; 89(1): 012722, 2014 Jan.
Artigo
em Inglês
| MEDLINE | ID: mdl-24580272
15.
RaTrav: a tool for calculating mean first-passage times on biochemical networks.
BMC Syst Biol
; 7: 130, 2013 Nov 21.
Artigo
em Inglês
| MEDLINE | ID: mdl-24261882
16.
Search for inhibitors of aminoacyl-tRNA synthases by virtual click chemistry.
J Mol Model
; 15(6): 665-72, 2009 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-19048310
17.
IA, database of known ligands of aminoacyl-tRNA synthetases.
J Comput Aided Mol Des
; 21(9): 523-5, 2007 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-17882381