Effect of transition state aromaticity and antiaromaticity on intrinsic barriers of proton transfers in aromatic and antiaromatic heterocyclic systems; an ab initio study.

An ab initio study of two series of carbon-to-carbon proton transfer reactions is reported. The first series refers to the heterocyclic C(4)H(5)X(+)/C(4)H(4)X (X = CH(-), NH, S, O, PH, CH(2), AlH, BH) systems, and the second to the linear [Formula: see text] (X = CH(-), NH, S, PH, O, CH(2), AlH, BH) reference systems . The major objective of this study was to examine to what degree the aromaticity of C(4)H(4)X (X = CH(-), NH, S, O, PH) and the antiaromaticity of C(4)H(4)X (X = AlH, BH) is expressed at the transition state of the proton transfer and how this affects the respective intrinsic barriers. From the differences in the barriers between a given cyclic system and the corresponding linear reference system , ΔΔH(++) = ΔH(++)(cyclic) - ΔH(++)(linear), it was inferred that in the cyclic systems both aromaticity and antiaromaticity lower ΔH(++)(cyclic). This conclusion was based on the assumption that the factors not associated with aromaticity or antiaromaticity such as resonance, inductive and polarizability effects in the protonated species, and charge delocalization occurring along the reaction coordinate affect ΔH(++) for the cyclic and linear systems in a similar way and hence offset each other in ΔΔH(++). The extent by which ΔH(++)(cyclic) is lowered in the aromatic systems correlates quite well with the degree of aromaticity of C(4)H(4)X as measured by aromatic stabilization energies as well as the NICS(1) values of the respective C(4)H(4)X. According to the rules of the principle of nonperfect synchronization (PNS), these results imply a disproportionately large degree of aromaticity at the transition state for the aromatic systems and a disproportionately small degree of transition state antiaromaticity for the antiaromatic systems. These conclusions are consistent with the changes in the NICS(1) values along the reaction coordinate. Other points discussed in the paper include the complex interplay of resonance, inductive, and polarizability effects, along with aromaticity and antiaromaticity on the proton affinities of C(4)H(4)X.

Proton transfers in aromatic and antiaromatic systems. How aromatic or antiaromatic is the transition state? An ab initio study.

An ab initio study of six carbon-to-carbon identity proton transfers is reported. They refer to the benzenium ion/benzene (C6H7(+)/C6H6), the 2,4-cyclopentadiene/cyclopentadienyl anion (C5H6/C5H5(-)), and the cyclobutenyl cation/cyclobutadiene (C4H5(+)/C4H4) systems and their respective noncyclic reference systems, that is, [structure: see text], [structure: see text] and [structure: see text]. For the aromatic C6H7(+)/C6H6 and C5H6/C5H5(-) systems, geometric parameters and aromaticity indices indicate that the transition states are highly aromatic. The proton-transfer barriers in these systems are quite low, which is consistent with a disproportionately high degree of transition-state aromaticity. For the antiaromatic C4H5(+)/C4H4 system, the geometric parameters and aromaticity indices indicate a rather small degree of antiaromaticity of the transition state. However, the proton-transfer barrier is higher than expected for a transition state with a low antiaromaticity. This implies that another factor contributes to the barrier; it is suggested that this factor is angle and torsional strain in the transition state. The question whether charge delocalization at the transition state might correlate with the development of aromaticity was also examined. No such correlation was found, that is, charge delocalization lags behind proton transfer as is commonly observed in nonaromatic systems involving pi-acceptor groups.

Structure revision of spiroleucettadine, a sponge alkaloid with a bicyclic core meager in H-atoms.

Our 2004 disclosure of the amino hemiketal-containing spiroleucettadine was met with keen interest by the natural products and synthetic communities. As repeated efforts to synthesize spiroleucettadine failed and questions regarding the original structure elucidation process arose, evidence mounted against the validity of the proposed structure. The low ratio of H/C in the core of spiroleucattadine complicated the original structure elucidation process. Speculation prompted a reisolation of spiroleucettadine from an untouched portion of the original Luecetta collection and a thorough analysis of analytical data. In addition, a systematic analysis of candidate structures was performed via density functional theory (DFT) calculations; a favored high scoring structure 1b was ultimately confirmed to be spiroleucettadine via X-ray analysis of crystalline spiroleucettadine and reinforced the validity of DFT calculations in structure elucidation. We present the revised structure of spiroleucettadine, a bicyclic sponge alkaloid with a scarcity of H-atoms in its core.

Carbanion stabilization by distal silyloxy groups. Origin of the high diastereoselectivity in the formation of quaternary centers with aryllead(IV) triacetate reagents.

Derivatives of methyl 5-hydroxy-2-oxo-1-cyclohexanecarboxylate react with aryllead(IV) reagents in high yield and with wide variation in diastereoselectivity. Ab initio calculations are consistent with a heretofore unrecognized attraction between the carbanionic center of the beta-ketoester intermediate and the distal OSiR(3) group. This attractive interaction stabilizes the silyl group in the axial conformation and leads to the excellent trans diastereoselection in the formation of quaternary centers. [reaction: see text]

Probing biotransformation relationships among pyridoacridines by focusing on oxygenated analogues.

The presence of the MeO-5 in the structure 5-methoxyamphimidine (5) is unusual in the light of a recent analysis of the relationships among sponge- and tunicate-derived pyridoacridines. We explore a possible biochemical pathway, from neoamphimidine (2) to 5-methoxyamphimidine (5). The results of semiempirical and ab initio calculations are presented to help understand the relationships that favor the formation of 5 versus the formation of undiscovered bis-oxygenated pyridoacridines.

Proton transfers from carbon acids activated by pi-acceptors. Changes in intrinsic barriers and transition state imbalances induced by a cyano group. An ab initio study.

We report an ab initio study of the identity carbon-to-carbon proton-transfer NCCH(2)Y + NCCH=Y(-) right arrow over left arrow NCCH=Y(-) + NCCH(2)Y in the gas phase, where Y = H, CH=CH(2), CH=O, CH=S, CN, NO, and NO(2). The main focus is on a comparison with the previously reported systems CH(3)Y + CH(2)=Y(-) right arrow over left arrow CH(2)=Y(-) + CH(3)Y, i.e., on the effect of the cyano group on acidities, proton-transfer barriers, and transition state structures. The conclusions of this study are as follows: (1) The transition state for the NCCH(2)Y/NCCH=Y(-) systems is more imbalanced than that for the CH(3)Y/CH(2)=Y(-) systems. (2) The cyano group leads to an increase in the acidities but to a decrease in the proton transfer barriers. This barrier reduction results from the fact that the stabilizing effect of the cyano group on the transition state is greater than that on the anion. (3) Within a reaction series, the barriers are largely dominated by the pi-acceptor strength of Y, i.e., the strongest pi-acceptors lead to the highest barriers. This is similar to proton transfers in solution but quite different from the CH(3)Y/CH(2)=Y(-) systems in the gas phase; in these latter systems pi-acceptor effects play a minor role while the barrier lowering field effect of Y is dominant.

Kinetic and thermodynamic acidities of pentacarbonyl(cyclobutenylidene)chromium complexes. Effect of antiaromaticity in the conjugate anion. An experimental and computational study.

The deprotonation of pentacarbonyl[(3-diethylamino-2,4-dimethyl)cyclobut-2-ene-1-ylidene]chromium (1d) and pentacarbonyl[(3-diethylamino-4-methyl-2-phenyl)cyclobut-2-ene-1-ylidene]chromium (1e) leads to antiaromatic conjugate anions by virtue of their being cyclobutadiene derivatives. Rate constants for the deprotonation of 1d and 1e by P2-Et and pKa values were determined in acetonitrile. Gas-phase B3LYP calculations of 1d, 1e, and their respective conjugate anions, using a generalized basis set, were also performed. Furthermore, for purposes of comparison with carbene complexes of similar structures, but having conjugate anions that are not antiaromatic, corresponding calculations were performed on pentacarbonyl[3-diethylamino-2,5-dimethyl)cyclopent-2-ene-1-ylidene]chromium (5), [dimethylamino(methyl)carbene]pentacarbonylchromium (3a), and [dimethylamino(iso-propyl)carbene]pentacarbonylchromium (3b) and their respective conjugate anions, and solution-phase pKa and kinetic measurements were carried out for 3a and 3b. Major points of interest include the effect of antiaromaticity on the kinetic and thermodynamic acidities of 1d and 1e, the large effect of the phenyl group on the gas-phase acidity of 1e, the strong attenuation of the acidities and the effect of the phenyl group in acetonitrile, and the position of the C=C double bonds in the cyclobutadiene ring of the conjugate anion of 1e.

Structures and cytotoxic properties of sponge-derived bisannulated acridines.

A reinvestigation of sponge natural products from additional Indo-Pacific collections of Xestospongiacf. carbonaria and X. cf. exigua has provided further insights on the structures, biological activities, and biosynthetic origin of bisannulated acridines. These alkaloids include one known pyridoacridine, neoamphimedine (2), and three new analogues, 5-methoxyneoamphimedine (4), neoamphimedine Y (5), and neoamphimedine Z (6). A completely new acridine, alpkinidine (7), was also isolated. A disk diffusion soft agar assay, using a panel of five cancer cell lines (solid tumors and leukemias) and two normal cells, was used to evaluate the differential cytotoxicity (solid tumor selectivity) of the sponge semipure extracts and selected compounds including amphimedine (1), 2, 4, and 7. While all four compounds were solid tumor selective, 1 and 2 were the most potent and 4 was the most selective. The rationale used to characterize the new structures is outlined along with the related biosynthetic pathways envisioned to generate 2 and 7.