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1.

Challenges of COVID-19 Case Forecasting in the US, 2020-2021.

Lopez, Velma K; Cramer, Estee Y; Pagano, Robert; Drake, John M; O'Dea, Eamon B; Adee, Madeline; Ayer, Turgay; Chhatwal, Jagpreet; Dalgic, Ozden O; Ladd, Mary A; Linas, Benjamin P; Mueller, Peter P; Xiao, Jade; Bracher, Johannes; Castro Rivadeneira, Alvaro J; Gerding, Aaron; Gneiting, Tilmann; Huang, Yuxin; Jayawardena, Dasuni; Kanji, Abdul H; Le, Khoa; Mühlemann, Anja; Niemi, Jarad; Ray, Evan L; Stark, Ariane; Wang, Yijin; Wattanachit, Nutcha; Zorn, Martha W; Pei, Sen; Shaman, Jeffrey; Yamana, Teresa K; Tarasewicz, Samuel R; Wilson, Daniel J; Baccam, Sid; Gurung, Heidi; Stage, Steve; Suchoski, Brad; Gao, Lei; Gu, Zhiling; Kim, Myungjin; Li, Xinyi; Wang, Guannan; Wang, Lily; Wang, Yueying; Yu, Shan; Gardner, Lauren; Jindal, Sonia; Marshall, Maximilian; Nixon, Kristen; Dent, Juan.

PLoS Comput Biol ; 20(5): e1011200, 2024 May.

Artigo em Inglês | MEDLINE | ID: mdl-38709852

2.

Machine learning to predict the source of campylobacteriosis using whole genome data.

Arning, Nicolas; Sheppard, Samuel K; Bayliss, Sion; Clifton, David A; Wilson, Daniel J.

PLoS Genet ; 17(10): e1009436, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34662334

3.

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis.

Earle, Sarah G; Lobanovska, Mariya; Lavender, Hayley; Tang, Changyan; Exley, Rachel M; Ramos-Sevillano, Elisa; Browning, Douglas F; Kostiou, Vasiliki; Harrison, Odile B; Bratcher, Holly B; Varani, Gabriele; Tang, Christoph M; Wilson, Daniel J; Maiden, Martin C J.

PLoS Pathog ; 17(10): e1009992, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34662348

4.

Hyperkalemia Risk with Finerenone: Results from the FIDELIO-DKD Trial.

Agarwal, Rajiv; Joseph, Amer; Anker, Stefan D; Filippatos, Gerasimos; Rossing, Peter; Ruilope, Luis M; Pitt, Bertram; Kolkhof, Peter; Scott, Charlie; Lawatscheck, Robert; Wilson, Daniel J; Bakris, George L.

J Am Soc Nephrol ; 33(1): 225-237, 2022 01.

Artigo em Inglês | MEDLINE | ID: mdl-34732509

5.

5-((3-Amidobenzyl)oxy)nicotinamides as SIRT2 Inhibitors: A Study of Constrained Analogs.

Ai, Teng; Wilson, Daniel J; Chen, Liqiang.

Molecules ; 28(22)2023 Nov 18.

Artigo em Inglês | MEDLINE | ID: mdl-38005376

6.

Evaluation of Monoexponential, Stretched-Exponential and Intravoxel Incoherent Motion MRI Diffusion Models in Early Response Monitoring to Neoadjuvant Chemotherapy in Patients With Breast Cancer-A Preliminary Study.

Almutlaq, Zyad M; Wilson, Daniel J; Bacon, Sarah E; Sharma, Nisha; Stephens, Samuel; Dondo, Tatendashe; Buckley, David L.

J Magn Reson Imaging ; 56(4): 1079-1088, 2022 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-35156741

7.

Bias, Repeatability and Reproducibility of Liver T₁ Mapping With Variable Flip Angles.

Tadimalla, Sirisha; Wilson, Daniel J; Shelley, David; Bainbridge, Gavin; Saysell, Margaret; Mendichovszky, Iosif A; Graves, Martin J; Guthrie, J Ashley; Waterton, John C; Parker, Geoffrey J M; Sourbron, Steven P.

J Magn Reson Imaging ; 56(4): 1042-1052, 2022 Oct.

Artigo em Inglês | MEDLINE | ID: mdl-35224803

8.

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission.

Eyre, David W; Laager, Mirjam; Walker, A Sarah; Cooper, Ben S; Wilson, Daniel J.

PLoS Comput Biol ; 17(1): e1008417, 2021 01.

Artigo em Inglês | MEDLINE | ID: mdl-33444378

9.

The harmonic mean p-value for combining dependent tests.

Wilson, Daniel J.

Proc Natl Acad Sci U S A ; 116(4): 1195-1200, 2019 01 22.

Artigo em Inglês | MEDLINE | ID: mdl-30610179

10.

GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes.

Wilson, Daniel J.

Mol Biol Evol ; 37(8): 2450-2460, 2020 08 01.

Artigo em Inglês | MEDLINE | ID: mdl-32167543

11.

4,7-Disubstituted 7H-Pyrrolo[2,3-d]pyrimidines and Their Analogs as Antiviral Agents against Zika Virus.

Soto-Acosta, Ruben; Jung, Eunkyung; Qiu, Li; Wilson, Daniel J; Geraghty, Robert J; Chen, Liqiang.

Molecules ; 26(13)2021 Jun 22.

Artigo em Inglês | MEDLINE | ID: mdl-34206327

12.

Application of machine learning techniques to tuberculosis drug resistance analysis.

Kouchaki, Samaneh; Yang, Yang; Walker, Timothy M; Sarah Walker, A; Wilson, Daniel J; Peto, Timothy E A; Crook, Derrick W; Clifton, David A.

Bioinformatics ; 35(13): 2276-2282, 2019 07 01.

Artigo em Inglês | MEDLINE | ID: mdl-30462147

13.

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.

Yang, Yang; Walker, Timothy M; Walker, A Sarah; Wilson, Daniel J; Peto, Timothy E A; Crook, Derrick W; Shamout, Farah; Zhu, Tingting; Clifton, David A.

Bioinformatics ; 35(18): 3240-3249, 2019 09 15.

Artigo em Inglês | MEDLINE | ID: mdl-30689732

14.

Bayesian inference of ancestral dates on bacterial phylogenetic trees.

Didelot, Xavier; Croucher, Nicholas J; Bentley, Stephen D; Harris, Simon R; Wilson, Daniel J.

Nucleic Acids Res ; 46(22): e134, 2018 12 14.

Artigo em Inglês | MEDLINE | ID: mdl-30184106

15.

Epidemics And Disability.

Wilson, Daniel J.

Bull Hist Med ; 94(4): 700-709, 2020.

Artigo em Inglês | MEDLINE | ID: mdl-33775948

16.

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.

Yang, Yang; Niehaus, Katherine E; Walker, Timothy M; Iqbal, Zamin; Walker, A Sarah; Wilson, Daniel J; Peto, Tim E A; Crook, Derrick W; Smith, E Grace; Zhu, Tingting; Clifton, David A.

Bioinformatics ; 34(10): 1666-1671, 2018 05 15.

Artigo em Inglês | MEDLINE | ID: mdl-29240876

17.

A functional form for a representative individual arterial input function measured from a population using high temporal resolution DCE MRI.

Georgiou, Leonidas; Wilson, Daniel J; Sharma, Nisha; Perren, Timothy J; Buckley, David L.

Magn Reson Med ; 81(3): 1955-1963, 2019 03.

Artigo em Inglês | MEDLINE | ID: mdl-30257053

18.

Bayesian reconstruction of transmission within outbreaks using genomic variants.

De Maio, Nicola; Worby, Colin J; Wilson, Daniel J; Stoesser, Nicole.

PLoS Comput Biol ; 14(4): e1006117, 2018 04.

Artigo em Inglês | MEDLINE | ID: mdl-29668677

19.

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation.

Das, Sudip; Lindemann, Claudia; Young, Bernadette C; Muller, Julius; Österreich, Babett; Ternette, Nicola; Winkler, Ann-Cathrin; Paprotka, Kerstin; Reinhardt, Richard; Förstner, Konrad U; Allen, Elizabeth; Flaxman, Amy; Yamaguchi, Yuko; Rollier, Christine S; van Diemen, Pauline; Blättner, Sebastian; Remmele, Christian W; Selle, Martina; Dittrich, Marcus; Müller, Tobias; Vogel, Jörg; Ohlsen, Knut; Crook, Derrick W; Massey, Ruth; Wilson, Daniel J; Rudel, Thomas; Wyllie, David H; Fraunholz, Martin J.

Proc Natl Acad Sci U S A ; 113(22): E3101-10, 2016 May 31.

Artigo em Inglês | MEDLINE | ID: mdl-27185949

20.

The distribution of bacterial doubling times in the wild.

Gibson, Beth; Wilson, Daniel J; Feil, Edward; Eyre-Walker, Adam.

Proc Biol Sci ; 285(1880)2018 06 13.

Artigo em Inglês | MEDLINE | ID: mdl-29899074

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Challenges of COVID-19 Case Forecasting in the US, 2020-2021.

Machine learning to predict the source of campylobacteriosis using whole genome data.

Genome-wide association studies reveal the role of polymorphisms affecting factor H binding protein expression in host invasion by Neisseria meningitidis.

Hyperkalemia Risk with Finerenone: Results from the FIDELIO-DKD Trial.

5-((3-Amidobenzyl)oxy)nicotinamides as SIRT2 Inhibitors: A Study of Constrained Analogs.

Evaluation of Monoexponential, Stretched-Exponential and Intravoxel Incoherent Motion MRI Diffusion Models in Early Response Monitoring to Neoadjuvant Chemotherapy in Patients With Breast Cancer-A Preliminary Study.

Bias, Repeatability and Reproducibility of Liver T₁ Mapping With Variable Flip Angles.

Probabilistic transmission models incorporating sequencing data for healthcare-associated Clostridioides difficile outperform heuristic rules and identify strain-specific differences in transmission.

The harmonic mean p-value for combining dependent tests.

GenomegaMap: Within-Species Genome-Wide dN/dS Estimation from over 10,000 Genomes.

4,7-Disubstituted 7H-Pyrrolo[2,3-d]pyrimidines and Their Analogs as Antiviral Agents against Zika Virus.

Application of machine learning techniques to tuberculosis drug resistance analysis.

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis.

Bayesian inference of ancestral dates on bacterial phylogenetic trees.

Epidemics And Disability.

Machine learning for classifying tuberculosis drug-resistance from DNA sequencing data.

A functional form for a representative individual arterial input function measured from a population using high temporal resolution DCE MRI.

Bayesian reconstruction of transmission within outbreaks using genomic variants.

Natural mutations in a Staphylococcus aureus virulence regulator attenuate cytotoxicity but permit bacteremia and abscess formation.

The distribution of bacterial doubling times in the wild.