The Chinese pine genome and methylome unveil key features of conifer evolution.

Conifers dominate the world's forest ecosystems and are the most widely planted tree species. Their giant and complex genomes present great challenges for assembling a complete reference genome for evolutionary and genomic studies. We present a 25.4-Gb chromosome-level assembly of Chinese pine (Pinus tabuliformis) and revealed that its genome size is mostly attributable to huge intergenic regions and long introns with high transposable element (TE) content. Large genes with long introns exhibited higher expressions levels. Despite a lack of recent whole-genome duplication, 91.2% of genes were duplicated through dispersed duplication, and expanded gene families are mainly related to stress responses, which may underpin conifers' adaptation, particularly in cold and/or arid conditions. The reproductive regulation network is distinct compared with angiosperms. Slow removal of TEs with high-level methylation may have contributed to genomic expansion. This study provides insights into conifer evolution and resources for advancing research on conifer adaptation and development.

Investigation into the variation characteristics and influencing factors of coalbed methane gas content in deep coal seams.

Gas saturation is a critical parameter for the selection and development of coalbed methane, as well as a key indicator reflecting the challenges in coalbed methane development and productivity evaluation of coalbed methane wells. As one of the significant factors influencing gas saturation, gas content plays a vital role in comprehensively investigating coal pore properties to fully comprehend the process and conditions of methane adsorption and desorption. In this study, 3# and 15# coals from Qinshui Basin, China was selected as research subjects. The experimental evaluation encompassed an examination of composition, pore characteristics, permeability characteristics of coal, rock mechanical parameters while discussing the impact of temperature and pressure on coal's adsorption and desorption capacity. The mineral characteristics analysis revealed that vitrinite is the main component with varying percentages and reflectance values in both 3# and 15# coal seams. The gas content and methane concentration in the 15# coal seam are higher than those in the 3# coal seam. The relationship between gas content within a coal seam and burial depth depends on achieving a balance between positive pressure effects caused by overburden stress exertion on gases trapped within pores under high pressures during burial history versus negative temperature effects due to cooling during geological processes over time. Predictions were made regarding deep-coal gas content which holds significant implications for accurately understanding variations in desorption behavior along with optimizing fracturing engineering.

An ethylene-induced NAC transcription factor acts as a multiple abiotic stress responsor in conifer.

The proper response to various abiotic stresses is essential for plants' survival to overcome their sessile nature, especially for perennial trees with very long-life cycles. However, in conifers, the molecular mechanisms that coordinate multiple abiotic stress responses remain elusive. Here, the transcriptome response to various abiotic stresses like salt, cold, drought, heat shock and osmotic were systematically detected in Pinus tabuliformis (P. tabuliformis) seedlings. We found that four transcription factors were commonly induced by all tested stress treatments, while PtNAC3 and PtZFP30 were highly up-regulated and co-expressed. Unexpectedly, the exogenous hormone treatment assays and the content of the endogenous hormone indicates that the upregulation of PtNAC3 and PtZFP30 are mediated by ethylene. Time-course assay showed that the treatment by ethylene immediate precursor, 1-aminocyclopropane-1-carboxylic acid (ACC), activated the expression of PtNAC3 and PtZFP30 within 8 hours. We further confirm that the PtNAC3 can directly bind to the PtZFP30 promoter region and form a cascade. Overexpression of PtNAC3 enhanced unified abiotic stress tolerance without growth penalty in transgenic Arabidopsis and promoted reproductive success under abiotic stress by shortening the lifespan, suggesting it has great potential as a biological tool applied to plant breeding for abiotic stress tolerance. This study provides novel insights into the hub nodes of the abiotic stresses response network as well as the environmental adaptation mechanism in conifers, and provides a potential biofortification tool to enhance plant unified abiotic stress tolerance.