Detalhe da pesquisa
1.
Know-how of holding a Bioinformatics competition: Structure, model, overview, and perspectives.
PLoS Comput Biol
; 19(12): e1011679, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-38127831
2.
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs.
Nucleic Acids Res
; 50(W1): W392-W397, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524575
3.
An Approach for Engineering Peptides for Competitive Inhibition of the SARS-COV-2 Spike Protein.
Molecules
; 29(7)2024 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-38611856
4.
Prioritizing Virtual Screening with Interpretable Interaction Fingerprints.
J Chem Inf Model
; 62(18): 4300-4318, 2022 09 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-36102784
5.
Propedia: a database for protein-peptide identification based on a hybrid clustering algorithm.
BMC Bioinformatics
; 22(1): 1, 2021 Jan 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-33388027
6.
GRaSP: a graph-based residue neighborhood strategy to predict binding sites.
Bioinformatics
; 36(Suppl_2): i726-i734, 2020 12 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-33381849
7.
Proteus: An algorithm for proposing stabilizing mutation pairs based on interactions observed in known protein 3D structures.
BMC Bioinformatics
; 21(1): 275, 2020 Jul 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32611389
8.
visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level.
BMC Bioinformatics
; 21(Suppl 2): 80, 2020 Mar 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-32164574
9.
Vermont: a multi-perspective visual interactive platform for mutational analysis.
BMC Bioinformatics
; 18(Suppl 10): 403, 2017 Sep 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-28929973
10.
GASS: identifying enzyme active sites with genetic algorithms.
Bioinformatics
; 31(6): 864-70, 2015 Mar 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-25388152
11.
PDBest: a user-friendly platform for manipulating and enhancing protein structures.
Bioinformatics
; 31(17): 2894-6, 2015 Sep 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25910698
12.
aCSM: noise-free graph-based signatures to large-scale receptor-based ligand prediction.
Bioinformatics
; 29(7): 855-61, 2013 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-23396119
13.
3-Keto-5-aminohexanoate cleavage enzyme: a common fold for an uncommon Claisen-type condensation.
J Biol Chem
; 286(31): 27399-405, 2011 Aug 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-21632536
14.
Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns.
BMC Genomics
; 12 Suppl 4: S12, 2011 Dec 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-22369665
15.
Identification of subfamily-specific sites based on active sites modeling and clustering.
Bioinformatics
; 26(24): 3075-82, 2010 Dec 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-20980272
16.
From In-Person to the Online World: Insights Into Organizing Events in Bioinformatics.
Front Bioinform
; 1: 711463, 2021.
Artigo
em Inglês
| MEDLINE | ID: mdl-36303729
17.
nAPOLI: A Graph-Based Strategy to Detect and Visualize Conserved Protein-Ligand Interactions in Large-Scale.
IEEE/ACM Trans Comput Biol Bioinform
; 17(4): 1317-1328, 2020.
Artigo
em Inglês
| MEDLINE | ID: mdl-30629512
18.
VERMONT: Visualizing mutations and their effects on protein physicochemical and topological property conservation.
BMC Proc
; 8(Suppl 2 Proceedings of the 3rd Annual Symposium on Biologica): S4, 2014.
Artigo
em Inglês
| MEDLINE | ID: mdl-25237391