Reflectance variation in the blue tit crown in relation to feather structure.

Structural plumage colour is one of the most enigmatic sexually selected traits. The information content of structural colour variation is debated, and the heterogeneity of the findings is hard to explain because the proximate background of within-species colour differences is very scarcely studied. We combined measurements of feather macrostructure and nanostructure to explain within-population variability in blue tit crown reflectance. We found that sexual dichromatism in aspects of crown reflectance was explained only by feather macrostructure, whereas nanostructural predictors accounted for some of the age-related differences in reflectance. Moreover, we found that both mean reflectance and spectral shape traits reflected a combination of quantity and regularity aspects in macrostructure and nanostructure. This rich proximate background provides ample scope for reflectance to convey various types of information on individual quality.

Application of an ePix100 detector for coherent scattering using a hard X-ray free-electron laser.

A prototype ePix100 detector was used in small-angle scattering geometry to capture speckle patterns from a static sample using the Linac Coherent Light Source (LCLS) hard X-ray free-electron laser at 8.34 keV. The average number of detected photons per pixel per pulse was varied over three orders of magnitude from about 23 down to 0.01 to test the detector performance. At high average photon count rates, the speckle contrast was evaluated by analyzing the probability distribution of the pixel counts at a constant scattering vector for single frames. For very low average photon counts of less than 0.2 per pixel, the `droplet algorithm' was first applied to the patterns for correcting the effect of charge sharing, and then the pixel count statistics of multiple frames were analyzed collectively to extract the speckle contrast. Results obtained using both methods agree within the uncertainty intervals, providing strong experimental evidence for the validity of the statistical analysis. More importantly it confirms the suitability of the ePix100 detector for X-ray coherent scattering experiments, especially at very low count rates with performances surpassing those of previously available LCLS detectors.

The X-ray Correlation Spectroscopy instrument at the Linac Coherent Light Source.

The X-ray Correlation Spectroscopy instrument is dedicated to the study of dynamics in condensed matter systems using the unique coherence properties of free-electron lasers. It covers a photon energy range of 4-25 keV. The intrinsic temporal characteristics of the Linac Coherent Light Source, in particular the 120 Hz repetition rate, allow for the investigation of slow dynamics (milliseconds) by means of X-ray photon correlation spectroscopy. Double-pulse schemes could probe dynamics on the picosecond timescale. A description of the instrument capabilities and recent achievements is presented.

High Frequency Sampling of TTL Pulses on a Raspberry Pi for Diffuse Correlation Spectroscopy Applications.

Diffuse Correlation Spectroscopy (DCS) is a well-established optical technique that has been used for non-invasive measurement of blood flow in tissues. Instrumentation for DCS includes a correlation device that computes the temporal intensity autocorrelation of a coherent laser source after it has undergone diffuse scattering through a turbid medium. Typically, the signal acquisition and its autocorrelation are performed by a correlation board. These boards have dedicated hardware to acquire and compute intensity autocorrelations of rapidly varying input signal and usually are quite expensive. Here we show that a Raspberry Pi minicomputer can acquire and store a rapidly varying time-signal with high fidelity. We show that this signal collected by a Raspberry Pi device can be processed numerically to yield intensity autocorrelations well suited for DCS applications. DCS measurements made using the Raspberry Pi device were compared to those acquired using a commercial hardware autocorrelation board to investigate the stability, performance, and accuracy of the data acquired in controlled experiments. This paper represents a first step toward lowering the instrumentation cost of a DCS system and may offer the potential to make DCS become more widely used in biomedical applications.

Prediction of individual differences in non-iridescent structural plumage colour from nanostructural periodicity and regularity.

Non-iridescent structural plumage reflectance is a sexually selected indicator of individual quality in several bird species. However, the structural basis of individual differences remains unclear. In particular, the dominant periodicity of the quasi-ordered feather barb nanostructure is of key importance in colour generation, but no study has successfully traced back reflectance parameters, and particularly hue, to nanostructural periodicity, although this would be key to deciphering the information content of individual variation. We used matrix small-angle X-ray scattering measurements of intact, stacked feather samples from the blue tit crown to estimate the sex-dependence and individual variation of nanostructure and its effects on light reflectance. Measures of nanostructural periodicity successfully predicted brightness, ultraviolet chroma and also hue, with statistically similar effects in the two sexes. However, we also observed a lack of overall effect of the nanostructural inhomogeneity estimate on reflectance chromaticity, sex-dependent accuracy in hue prediction and strong sex-dependence in position estimation error. We suggest that reflectance attributes are modified by other feather structures in a sex-specific manner, and that within-individual variation in nanostructural parameters exists within or among feathers and this confounds the interpretation of structure-reflectance relationships at the plumage area level.

Moiré fringe imaging of heterostructures by scanning transmission electron microscopy.

A heterostructured crystalline bilayer specimen is known to produce moiré fringes (MFs) in the conventional transmission electron microscopy (TEM). However, the understanding of how these patterns form in scanning transmission electron microscopy (STEM) remains limited. Here, we extended the double-scattering model to establish the imaging theory of MFs in STEM for a bilayer sample and applied this theory to successfully explain both experimental and simulated STEM images of a perovskite PbZrO3/SrTiO3 system. Our findings demonstrated that the wave vectors of electrons exiting from Layer-1 and their relative positions with the atomic columns of Layer-2 should be taken into account. The atomic column misalignment leads to a faster reduction in the intensity of the secondary scattering beam compared to the single scattering beam as the scattering angle increases. Consequently, the intensity distribution of MFs in the bright field (BF)-STEM can be still described as the product of two single atomic images. However, in high angle annular dark field (HAADF)-STEM, it is approximately described as the superposition of the two images. Our work not only fills a knowledge gap of MFs in incoherent imaging, but also emphasizes the importance of the coherent scattering restricted by the real space when analyzing the HAADF-STEM imaging.

X-rays, electrons, and neutrons as probes of atomic matter.

X-rays, electrons, and neutrons probe different properties of matter. X-rays feel electron density (ED). Electrons sense the electrostatic potential (ESP) of electrons and nuclei. Neutrons are sensitive to nuclear coherent scattering length (NCSL). While NCSL maps are widely understood to be different, ED and ESP maps are tacitly assumed to be similar. Here, I show that the belief in ED and ESP map equivalence is mistaken, but contains a grain of truth. Using density functional theory (DFT), the Bethe-Mott (BM) relation, and the Thomas-Fermi (TF) and Cromer-Mann (CM) atomic models, I show that ED and ESP maps are indeed more similar to each other than to NCSL maps. Nevertheless, peak and integrated map values depend differently on the atomic order number and on the contributions from electrons in the inner and outer CM shells. ED and ESP maps also differ in the sign and relative magnitude of excess charge effects.

The Influence of Machining Conditions on the Orientation of Nanocrystallites and Anisotropy of Physical and Mechanical Properties of Flexible Graphite Foils.

The physical and mechanical properties and structural condition of flexible graphite foils produced by processing natural graphite with nitric acid, hydrolysis, thermal expansion of graphite and subsequent rolling were studied. The processes of obtaining materials and changing their characteristics has been thoroughly described and demonstrated. The structural transformations of graphite in the manufacture of foils were studied by X-ray diffraction analysis (XRD) and transmission electron microscopy (TEM). A decrease in the average size of the coherent scattering regions (CSR) of nanocrystallites was revealed during the transition from natural graphite to thermally expanded graphite from 57.3 nm to 20.5 nm at a temperature of 900 °C. The rolling pressure ranged from 0.05 MPa to 72.5 MPa. The thickness of the flexible graphite foils varied from 0.11 mm to 0.75 mm, the density-from 0.70 to 1.75 g/cm3. It was shown that with an increase in density within these limits, the compressibility of the graphite foil decreased from 65% to 9%, the recoverability increased from 5% to 60%, and the resiliency decreased from 10% to 6%, which is explained by the structural features of nanocrystallites. The properties' anisotropy of graphite foils was studied. The tensile strength increased with increasing density from 3.0 MPa (ρ = 0.7 g/cm3) to 14.0 MPa (ρ = 1.75 g/cm3) both in the rolling direction L and across T. At the same time, the anisotropy of physical and mechanical properties increased with an increase in density along L and T to 12% with absolute values of 14.0 MPa against 12.5 MPa at a thickness of 200 µm. Expressed anisotropy was observed along L and T when studying the misorientation angles of nanocrystallites: at ρ = 0.7 g/cm3, it was from 13.4° to 14.4° (up to 5% at the same thickness); at ρ = 1.3 g/cm3-from 11.0° to 12.8° (up to 7%); at ρ = 1.75 g/cm3-from 10.9° to 12.4° (up to 11%). It was found that in graphite foils, there was an increase in the coherent scattering regions in nanocrystallites with an increase in density from 24.8 nm to 49.6 nm. The observed effect can be explained by the coagulation of nanocrystallites by enhancing the Van der Waals interaction between the surface planes of coaxial nanocrystallites, which is accompanied by an increase in microstrains. The results obtained can help discover the mechanism of deformation of porous graphite foils. The obtained results can help discover the deformation mechanism of porous graphite foils. We assume that this will help predict the material behavior under industrial operating conditions of products based flexible graphite foils.

Silica-Containing Biomimetic Composites Based on Sea Urchin Skeleton and Polycalcium Organyl Silsesquioxane.

The paper presents an original approach to the synthesis of polycalciumorganyl silsesquioxanes through the reaction of polyorganyl silsesquioxanes [RSiO1.5]n (where R is an ethyl and phenyl radical) with sea urchin skeleton under the conditions of mechanochemical activation. The novelty and practical significance of the present study lies in the use of an available natural raw source as a source of calcium ions to initiate the reaction of calcium silicate formation and create a matrix for the formation of a porous inorganic composite framework. The thermal stability of the introduced silicates, i.e., the ability to maintain a porous structure at high temperatures, is key to the production of an ordered porous material. The reaction scheme was proposed to be based on the interaction of calcium carbonate with the siloxane bond. FTIR, XRD, GPC, and TGA were used to study the composition and structure of the obtained materials. The cross-sectional area of the polymer chain and the volumes of the coherent scattering regions of the polymers obtained were calculated from the XRD data. To prepare the composites, the sea urchin skeleton was further modified with polycalciumorganyl silsesquioxanes in a toluene solution. To remove the sea urchin skeleton, the obtained biomimetic composites were treated with hydrochloric acid. The results of the morphological and surface composition studies are reported. The method proposed in the paper could be of fundamental importance for the possibility of obtaining structured porous composite materials for a wide range of practical applications, including for the purpose of creating a composite that may be a promising carrier for targeted delivery of chemotherapy agents.

Nanocomposites Based on Pyrolyzed Polyacrylonitrile Doped with FeCoCr/C Transition Metal Alloy Nanoparticles: Synthesis, Structure, and Electromagnetic Properties.

In the last decade, the development of new materials that absorb electromagnetic radiation (EMR) has received research interest as they can significantly enhance the performance of electronic devices and prevent adverse effects caused by electromagnetic pollution. Electromagnetic radiation absorbers with a low weight and small thickness of the absorber layer, good absorption capacity, and a wide frequency response bandwidth are highly demanded. Here, for the first time, the properties of polymer nanocomposites FeCoCr/C synthesized by doping FeCoCr alloy nanoparticles into a polymer matrix of pyrolyzed polyacrylonitrile are investigated. An analysis of the magnetic properties of FeCoCr/C nanocomposites showed that increasing the synthesis temperature increased the specific magnetization and coercive force values of the FeCoCr/C nanocomposites. The dependence between the ratio of metals in the precursor of pyrolyzed polyacrylonitrile and the electromagnetic and wave-absorbing properties of FeCoCr/C nanocomposites is considered, and the results of complex dielectric and magnetic permeability measurements are analyzed. It is found that the most promising of all the studied materials are those obtained at T = 700 °C with the ratio of metals Fe:Co:Cr = 35:35:30.

Acoustic scattering by gas-bearing cyanobacterium Microcystis: Modeling and in situ biomass assessment.

Cyanobacterial harmful algal blooms (HABs) are increasing in a growing number of aquatic ecosystems around the world due to eutrophication and climatic change over the past few decades. Quantitative monitoring of HABs remains a challenge because their distributions are spatially heterogeneous and temporally variable. Most of the standard biological sampling methods are labor intensive and time consuming. In this paper, we present an efficient acoustic method to assess the biomass (biovolume) concentration of the cyanobacterium Microcystis in aquatic ecosystems. Acoustic backscattering vertical profiles from a gas-bearing Microcystis population were measured with echosounders at three frequencies (70, 120, and 333 kHz) in Lake Kinneret (case study). Concurrently, the volume concentration of Microcystis colonies and cyanobacteria-related Chlorophyll a were evaluated. We developed a partially coherent acoustic scattering model to quantify the cyanobacterium biomass based on depth-dependent acoustic backscattering signals. We also evaluated empirical regression models to obtain the Microcystis biomass from acoustically measured volume backscattering strength, Sv. It is demonstrated that both methods can convert the Sv to Microcystis biovolume concentrations reasonably well. Pro and cons of these methods are discussed. The results suggest that the presented methods may have a potential to be used for broader applications to monitor and quantify the gas-containing plankton in large aquatic ecosystems.

Bark beetles as lidar targets and prospects of photonic surveillance.

Forestry is raising concern about the outbreaks of European spruce bark beetle, Ips typographus, causing extensive damage to the spruce forest and timber values. Precise monitoring of these beetles is a necessary step towards preventing outbreaks. Current commercial monitoring methods are catch-based and lack in both temporal and spatial resolution. In this work, light scattering from beetles is characterized, and the feasibility of entomological lidar as a tool for long-term monitoring of bark beetles is explored. Laboratory optical properties, wing thickness, and wingbeat frequency of bark beetles are reported, and these parameters can infer target identity in lidar data. Lidar results from a Swedish forest with controlled bark beetle release event are presented. The capability of lidar to simultaneously monitor both insects and a pheromone plume mixed with chemical smoke governing the dispersal of many insects is demonstrated. In conclusion, entomological lidar is a promising tool for monitoring bark beetles.

Joint crystallization of KCuAl[PO4]2 and K(Al,Zn)2[(P,Si)O4]2: crystal chemistry and mechanism of formation of phosphate-silicate epitaxial heterostructure.

Two novel phases, potassium copper aluminium bis(phosphate), KCuAl[PO4]2 (I), and potassium zinc aluminium bis(phosphate-silicate), K(Al,Zn)2[(P,Si)O4]2 (II), were obtained in one hydrothermal synthesis experiment at 553 K. Their crystal structures have been studied using single-crystal X-ray diffraction. (I) is a new member of the A+M2+M3+[PO4]2 family. Its open 3D framework built by AlO5 and PO4 polyhedra includes small channels populated by columns of CuO6 octahedra sharing edges, and large channels where K+ ions are deposited. It is assumed that the stability of this structure type is due to the pair substitution of Cu/Al with Ni/Fe, Co/Fe or Mg/Fe in different representatives of the series. From the KCuAl[PO4]2 structural features, one may suppose it is a potentially electrochemically active material and/or possible low-temperature antiferromagnet. In accordance with results obtained from X-ray diffraction data, using scanning electron microscopy, microprobe analysis and detailed crystal chemical observation, (II) is considered as a product of epitaxial intergrowth of phosphate KAlZn[PO4]2 and silicate KAlSi[SiO4]2 components having closely similar crystal structures. The assembly of `coherent intergrowth' is described in the framework of a single diffraction pattern.

Thermal Transport in Supported Graphene Nanomesh.

Graphene is considered as a promising candidate material to replace silicon for the next-generation nanoelectronics because of its superb carrier mobility. To evaluate its thermal dissipation capability as electronic materials, the thermal transport in monolayer graphene was extensively explored over the past decade. However, the supported chemical vapor deposition (CVD) grown monolayer graphene with submicron structures were seldom studied, which is important for practical nanoelectronics. Here we investigate the thermal transport properties in a series of CVD graphene nanomeshes patterned by a hard-template-assisted etching method. The experimental and numerical results uncovered the phonon backscattering at hole boundary (<100 nm neck width) and its substantial contribution to the thermal conductivity reduction.

Three-dimensional reciprocal space x-ray coherent scattering tomography of two-dimensional object.

PURPOSE: X-ray coherent scattering tomography is a powerful tool in discriminating biological tissues and bio-compatible materials. Conventional x-ray scattering tomography framework can only resolve isotropic scattering profile under the assumption that the material is amorphous or in powder form, which is not true especially for biological samples with orientation-dependent structure. Previous tomography schemes based on x-ray coherent scattering failed to preserve the scattering pattern from samples with preferred orientations, or required elaborated data acquisition scheme, which could limit its application in practical settings. Here, we demonstrate a simple imaging modality to preserve the anisotropic scattering signal in three-dimensional reciprocal (momentum transfer) space of a two-dimensional sample layer. METHODS: By incorporating detector movement along the direction of x-ray beam, combined with a tomographic data acquisition scheme, we match the five dimensions of the measurements with the five dimensions (three in momentum transfer domain, and two in spatial domain) of the object. We employed a collimated pencil beam of a table-top copper-anode x-ray tube, along with a panel detector to investigate the feasibility of our method. RESULTS: We have demonstrated x-ray coherent scattering tomographic imaging at a spatial resolution ~2 mm and momentum transfer resolution 0.01 Å-1 for the rotation-invariant scattering direction. For any arbitrary, non-rotation-invariant direction, the same spatial and momentum transfer resolution can be achieved based on the spatial information from the rotation-invariant direction. The reconstructed scattering profile of each pixel from the experiment is consistent with the x-ray diffraction profile of each material. The three-dimensional scattering pattern recovered from the measurement reveals the partially ordered molecular structure of Teflon wrap in our sample. CONCLUSIONS: We extend the applicability of conventional x-ray coherent scattering tomography to the reconstruction of two-dimensional samples with anisotropic scattering profile by introducing additional degree of freedom on the detector. The presented method has the potential to achieve low-cost, high-specificity material discrimination based on x-ray coherent scattering.

Geant4 implementation of inter-atomic interference effect in small-angle coherent X-ray scattering for materials of medical interest.

An extension to Geant4 Monte Carlo code was developed to take into account inter-atomic (molecular) interference effects in X-ray coherent scattering. Based on our previous works, the developed code introduces a set of form factors including interference effects for a selected variety of amorphous materials useful for medical applications, namely various tissues and plastics used to build phantoms. The code is easily upgradable in order to include new materials and offers the possibility to model a generic tissue as a combination of a set of four basic components. A dedicated Geant4 application for the simulation of X-ray diffraction experiments was created to validate the proposed upgrade of Rayleigh scattering model. A preliminary validation of the code obtained through a comparison with EGS4 and an experiment is presented, showing a satisfactory agreement.

Coherent scatter imaging Monte Carlo simulation.

Conventional mammography can suffer from poor contrast between healthy and cancerous tissues due to the small difference in attenuation properties. Coherent scatter slot scan imaging is an imaging technique which provides additional information and is compatible with conventional mammography. A Monte Carlo simulation of coherent scatter slot scan imaging was performed to assess its performance and provide system optimization. Coherent scatter could be exploited using a system similar to conventional slot scan mammography system with antiscatter grids tilted at the characteristic angle of cancerous tissues. System optimization was performed across several parameters, including source voltage, tilt angle, grid distances, grid ratio, and shielding geometry. The simulated carcinomas were detectable for tumors as small as 5 mm in diameter, so coherent scatter analysis using a wide-slot setup could be promising as an enhancement for screening mammography. Employing coherent scatter information simultaneously with conventional mammography could yield a conventional high spatial resolution image with additional coherent scatter information.

High-Precision Determination of the Neutron Coherent Scattering Length.

The neutron coherent scattering length b c has been determined interferometrically to an uncertainty of about 5 × 10(-5) by measuring the nondispersive phase. We propose improving the uncertainty to about 10(-6) by optimizing various parameters of the interferometric experiment. Any uncertainty in the b c determination arising from possible variations in the constitution of the ambient air can be eliminated by performing the experiment in vacuum. When such uncertainty is attained, it becomes necessary to account for the neutron beam refraction at the sample-ambient interfaces, to infer the correct b c from the observed phase. The formula for the phase used hitherto is approximate and would significantly overestimate b c. The refractive index for neutrons can thus be determined to a phenomenal uncertainty of about 10(-12).

Measurement of the Coherent Neutron Scattering Length of (3) He.

By means of neutron interferometry the s-wave neutron scattering length of the (3)He nucleus was re-measured at the Institut Laue-Langevin (ILL). Using a skew symmetrical perfect crystal Si-interferometer and a linear twin chamber cell, false phase shifts due to sample misalignment were reduced to a negligible level. Simulation calculations suggest an asymmetrically alternating measuring sequence in order to compensate for systematic errors caused by thermal phase drifts. There is evidence in the experiment's data that this procedure is indeed effective. The neutron refractive index in terms of Sears' exact expression for the scattering amplitude has been analyzed in order to evaluate the measured phase shifts. The result of our measurement, b' c = (6.000 ± 0.009) fm, shows a deviation towards a greater value compared to the presently accepted value of b' c = (5.74 ± 0.07) fm, confirming the observation of the partner experiment at NIST. On the other hand, the results of both precision measurements at NIST and ILL exhibit a serious 12σ (12 standard uncertainties) deviation, the reason for which is not clear yet.

Effective atomic number of some sugars and amino acids for scattering of (241)Am and (137)Cs gamma rays at low momentum transfer.

In this paper, we report the effective atomic number of some H, C, N and O based sugars and amino acids. These have been determined by using a handy expression which is based on the theoretical angle integrated small angle (coherent+incoherent) scattering cross sections of seven elements of Z≤13 in four angular ranges of (0-4°), (0-6°), (0-8°) and (0-10°)for (241)Am (59.54 keV) and (137)Cs (661.6 keV) gamma rays. The theoretical scattering cross sections were computed by a suitable numerical integration of the atomic form factor and incoherent scattering function compilations of Hubbell et al. (1975) which make use of the non-relativistic Hartree-Fock (NRHF) model for the atomic charge distribution of the elements in the angular ranges of interest. The angle integrated small angle scattering cross sections of the H, C, N and O based sugars and amino acids measured by a new method reported recently by the authors were used in the handy expression to derive their effective atomic number. The results are compared with the other available data and discussed. Possible conclusions are drawn based on the present study.