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1.
Plant Dis ; 108(7): 1993-1999, 2024 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-38213117

RESUMO

The root-lesion nematode, Pratylenchus penetrans, is a ubiquitous parasite of roots of temperate fruit trees. It affects early growth of trees replanted into former orchard sites where populations have built up and may contribute to decline complexes of older trees. Most British Columbia, Canada, apple acreage is planted with M.9 rootstock, but growers are increasingly considering Geneva-series rootstocks such as G.41 and G.935. Among these rootstocks, responses to P. penetrans, specifically, are poorly known. To compare the resistance and tolerance to P. penetrans of G.41, G.935, and M.9 rootstocks ('Ambrosia' scion), a field microplot experiment was established in spring of 2020 at the Summerland Research and Development Centre. The experimental design was a two by three factorial combination of: P. penetrans inoculation (+/-) and rootstock (G.41, G.935, and M.9), with 20 replicate microplots of each of the six treatment combinations arranged in a randomized complete block design. The P. penetrans inoculum was 5,400 nematodes per microplot (54 P. penetrans liter-1 soil), which is below commonly accepted damage thresholds. Though P. penetrans population densities were lower for the G.41 rootstock by the end of the 2021 growing season, the effects of P. penetrans were similar among rootstocks. In the establishment year (2020), P. penetrans caused significant reductions in aboveground growth. In 2021, shoot growth and root weight were reduced by P. penetrans. The nematode also reduced rates of leaf gas exchange and stem water potential. These data suggest that while G.41 and G.935 may have other horticultural benefits over M.9, they are equally susceptible to P. penetrans at the early stages of tree growth.


Assuntos
Malus , Doenças das Plantas , Raízes de Plantas , Animais , Malus/parasitologia , Raízes de Plantas/parasitologia , Doenças das Plantas/parasitologia , Tylenchoidea/fisiologia
2.
J Nematol ; 56(1): 20240024, 2024 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-39143958

RESUMO

Oregon leads the United States in nursery production of shade trees and is third in deciduous and broadleaf evergreen shrub production. Plant-parasitic nematodes have been implicated in problems with the growth of plants in nurseries and are also of phytosanitary risk. A greenhouse experiment was conducted to evaluate the host status of four trees (Quercus alba, Quercus garryana, Acer campestre, Thuja occidentalis) and two shrubs (Buxus sempervirens, Rhododendron catawbiense) to Meloidogyne incognita, Meloidogyne hapla, and Pratylenchus neglectus. Each plant/nematode treatment was replicated five times, and the experiment was conducted twice. Plants were inoculated with 3,000 eggs of M. incognita or M. hapla and 2,500 individuals of P. neglectus two weeks after planting. After three months, the plants were harvested, and the total density of nematodes in soil and roots for P. neglectus and the total density of second-stage juveniles (J2) in soil and eggs on roots for M. hapla and M. incognita were determined. The final nematode population (Pf) and reproductive factor (RF = Pf/initial population density) were calculated. For M. incognita and M. hapla, all of the ornamental trees and shrubs would be considered as fair to good hosts with RF values > 1. Meloidogyne incognita had the highest Pf (5,234 total J2 and eggs/pot) and RF value (28.4) on A. campestre. For P. neglectus, all of the ornamental trees and shrubs were fair to good hosts, except for B. sempervirens. Buxus sermpervirens was not a host for P. neglectus, with an RF value of almost 0. This is the first report of Q. alba, Q. garryana, and A. campestre as hosts for M. incognita, M. hapla, and P. penetrans. This is also the first report of T. occidentalis and R. catawbiense as hosts for P. penetrans and the non-host status of B. sermpervirens for P. penetrans.

3.
Plant Dis ; 107(7): 2096-2103, 2023 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-36518020

RESUMO

Nonhost or poor host cover crops can provide an alternative method for nematode management. A total of 25 cover crop species/cultivars, along with three controls were evaluated in greenhouse experiments for their host suitability to the root-lesion nematode Pratylenchus penetrans. Trials were conducted in a completely randomized design using nematode-infested soil and terminated 3 months after planting. Nematodes were extracted from the roots and soil of each crop to determine their final population densities, reproductive factor (Rf = final population density/initial population density), and distributions in the soil and root habitats. Reproductive factor was used to categorize the host suitability of crops. Faba bean cv. Petite produced the greatest nematode population density in all trials, whereas only alfalfa cv. Bullseye constantly demonstrated the poor host ability to P. penetrans. Annual ryegrass, winter rye cv. ND Dylan, and white proso millet also showed poor hosts in most trials. Five cover crops consistently maintained the population throughout the experiments, with Rf values less than 2, and the remaining tested cover crops were suitable hosts for P. penetrans. The majority of the tested cover crops had less than or equal to 30% of the final population residing in the roots after three months of growth in all the trials. This research helps us gain the knowledge on cover crops and P. penetrans interaction and will be useful for potato growers to select better cover crops and avoid susceptible hosts to manage P. penetrans in infested fields to minimize potato yield losses.


Assuntos
Lolium , Solanum tuberosum , Tylenchoidea , Animais , Produtos Agrícolas , Solo
4.
Plant Dis ; 107(12): 3817-3824, 2023 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37227435

RESUMO

Root-lesion nematode (RLN; Pratylenchus neglectus) is a migratory endoparasite and a major soilborne pathogen that affects wheat (Triticum spp.) production worldwide. Genetic resistance is one of the most economical and effective ways to manage P. neglectus in wheat. This study evaluated 37 local cultivars and germplasm lines in seven greenhouse experiments, including 26 hexaploid wheat, six durum wheat, two synthetic hexaploid wheat, one emmer wheat, and two triticale for P. neglectus resistance from 2016 to 2020. North Dakota field soils infested with two RLN populations (350 to 1,125 nematodes per kilogram of soil) were used for resistance screening under controlled greenhouse conditions. The final nematode population density for each cultivar and line was counted under the microscope to categorize the resistance ranking of these entries as resistant, moderately resistant, moderately susceptible, and susceptible. Out of the 37 cultivars and lines, one was classified as resistant (Brennan); 18 were moderately resistant (Divide, Carpio, Prosper, Advance, Alkabo, SY Soren, Barlow, Bolles, Select, Faller, Briggs, WB Mayville, SY Ingmar, W7984, PI 626573, Ben, Grandin, and Villax St. Jose); 11 were moderately susceptible; and seven were susceptible to P. neglectus. The resistant to moderately resistant lines identified in this study could be used in breeding programs after the resistance genes or loci are further elucidated. This research provides valuable information about P. neglectus resistance among wheat and triticale cultivars used in the Upper Midwest region of the United States.


Assuntos
Triticum , Tylenchoidea , Animais , Triticum/genética , Triticum/parasitologia , Locos de Características Quantitativas , North Dakota , Doenças das Plantas/parasitologia , Melhoramento Vegetal , Tylenchoidea/genética , Resistência à Doença/genética
5.
Int J Mol Sci ; 24(8)2023 Apr 15.
Artigo em Inglês | MEDLINE | ID: mdl-37108472

RESUMO

Root-lesion nematodes (genus Pratylenchus) belong to a diverse group of plant-parasitic nematodes (PPN) with a worldwide distribution. Despite being an economically important PPN group of more than 100 species, genome information related to Pratylenchus genus is scarcely available. Here, we report the draft genome assembly of Pratylenchus scribneri generated on the PacBio Sequel IIe System using the ultra-low DNA input HiFi sequencing workflow. The final assembly created using 500 nematodes consisted of 276 decontaminated contigs, with an average contig N50 of 1.72 Mb and an assembled draft genome size of 227.24 Mb consisting of 51,146 predicted protein sequences. The benchmarking universal single-copy ortholog (BUSCO) analysis with 3131 nematode BUSCO groups indicated that 65.4% of the BUSCOs were complete, whereas 24.0%, 41.4%, and 1.8% were single-copy, duplicated, and fragmented, respectively, and 32.8% were missing. The outputs from GenomeScope2 and Smudgeplots converged towards a diploid genome for P. scribneri. The data provided here will facilitate future studies on host plant-nematode interactions and crop protection at the molecular level.


Assuntos
Parasitos , Tylenchoidea , Animais , Anotação de Sequência Molecular , Análise de Sequência de DNA , Genoma , Sequência de Bases , Tylenchoidea/genética , Parasitos/genética
6.
J Helminthol ; 97: e73, 2023 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-37771040

RESUMO

In a recent survey of nematodes associated with tobacco in Shandong, China, the root-lesion nematode Pratylenchus coffeae was identified using a combination of morphology and molecular techniques. This nematode species is a serious parasite that damages a variety of plant species. The model plant benthi, Nicotiana benthamiana, is frequently used to study plant-disease interactions. However, it is not known whether this plant species is a host of P. coffeae. The objectives of this study were to evaluate the parasitism and pathogenicity of five populations of the root-lesion nematode P. coffeae on N. benthamiana.N. benthamiana seedlings with the same growth status were chosen and inoculated with 1,000 nematodes per pot. At 60 days after inoculation, the reproductive factors (Rf = final population densities (Pf)/initial population densities (Pi)) for P. coffeae in the rhizosphere of N. benthamiana were all more than 1, suggesting that N. benthamiana was a good host plant for P. coffeae.Nicotiana. benthamiana infected by P. coffeae showed weak growth, decreased tillering, high root reduction, and noticeable brown spots on the roots. Thus, we determined that the model plant N. benthamiana can be used to study plant-P. coffeae interactions.


Assuntos
Nicotiana , Tylenchoidea , Animais , Raízes de Plantas/parasitologia , Tylenchoidea/genética , China
7.
J Nematol ; 55(1): 20230060, 2023 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-38264458

RESUMO

Pratylenchus penetrans is one of the world's most common and destructive root-lesion nematodes and can parasitize more than 400 plant species. P. penetrans has been reported to cause serious damage to artichokes in several countries, such as Greece, Brazil, and France. Until now, there have been no reports of P. penetrans associated with artichokes in Vietnam. In this study, we recorded this species in artichoke fields in Lam Dong province, Vietnam with an average density of 50 nematodes/100g of soil (frequency of appearance at 64.7%). This nematode was associated with symptoms such as yellowing leaves, stunt, and root necrosis of artichokes in Vietnam, indicating its high damaging potential and a need for suitable control strategies. The identification of this species in our study was confirmed by morphology, morphometric data, and molecular characterization of 18S and 28S rRNA regions. Our study also provides the first molecular data of P. penetrans in Vietnam. The inclusion of molecular data for P. penetrans in Vietnam represents a significant contribution to the scientific community and a pivotal advancement in addressing nematode-related challenges in agriculture. This dataset serves as an invaluable reference for various molecular-focused endeavors, including but not limited to molecular identification, pathogenicity studies, and the development of effective management strategies.

8.
Plant Dis ; 106(8): 2117-2126, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35147453

RESUMO

Two greenhouse experiments were conducted with the new species of root-lesion nematode, Pratylenchus dakotaensis, discovered in North Dakota, USA in 2017 and named in 2021. Experiment 1 was conducted to ascertain resistance levels of soybean (Glycine max [L.] Merr.) cultivars to the new species P. dakotaensis and Experiment 2 was conducted to evaluate the population levels of P. dakotaensis in roots versus soil. A total of 20 soybean cultivars, and the positive control, cultivar Barnes, accompanying a nonplanted control, were evaluated in both experiments; they each had five replicates and the experiments were repeated. Among the 20 soybean cultivars evaluated, a cultivar with the ID# 13 consistently produced the greatest population densities of P. dakotaensis across all the experiments and therefore it was selected as the susceptible check. The ratio of the final nematode population density of a test cultivar relative to the final population density of the susceptible check was used to scale resistance rating. Combined results of all the trials indicated that seven of the cultivars were moderately resistant, nine of the cultivars plus 'Barnes' were moderately susceptible, and four of the cultivars were susceptible. However, none of the cultivars tested were classified as resistant. Analysis of P. dakotaensis population levels revealed that ≥50% of the population resided in the root habitat and the remaining nematodes were recovered from soil at 9 weeks after planting for a majority of the cultivars tested. These results provide an insight into the virulence of P. dakotaensis on commercial soybean cultivars.


Assuntos
Fabaceae , Tylenchoidea , Animais , Solo , Glycine max , Virulência
9.
Plant Dis ; 106(11): 2904-2910, 2022 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-35285260

RESUMO

Models were developed to quantify the impact of Pratylenchus penetrans to the early season growth and yield of soybean in field and greenhouse environments and to estimate yield loss because of P. penetrans in Wisconsin. There was a negative linear relationship between initial nematode population densities (Pi) and shoot and total plant weight at V2 and yield, pod number, seed number, and seed mass at harvest in the field. Relative yield loss, modeled for the second year of the field experiment, suggested a loss of 4.5% for yield and between 2.4 and 2.8% for yield components at the mean field Pi value. Negative linear relationships were demonstrated for the relative loss in those variables as well as for harvest index and shoot, root, and total plant weight at harvest in the greenhouse. Stress imposed by P. penetrans began within 2 weeks after planting and continued through harvest. Estimates of the percent loss attributed to each nematode Pi value were 0.020% for yield, 0.015% for pod number, and 0.017% for seed number. Pratylenchus spp. was the most widely prevalent pest nematode among samples submitted to a statewide nematode testing program. Molecular identification of a subset of 63 samples suggested 15% were infested with P. penetrans at a mean Pi value of 197 P. penetrans per 100 cm3 soil. Yield loss because of P. penetrans, estimated from prevalence data and our empirical greenhouse model, ranged from 0.23 to 2.76% among Wisconsin's agricultural districts. The cumulative impact for all Pratylenchus spp. is likely much greater, given this loss estimate does not account for the monoecious species present in 79% of the samples.


Assuntos
Glycine max , Tylenchoidea , Animais , Wisconsin , Doenças das Plantas/prevenção & controle , Raízes de Plantas , Plantas
10.
J Exp Bot ; 72(10): 3835-3845, 2021 05 04.
Artigo em Inglês | MEDLINE | ID: mdl-33712814

RESUMO

Although the effects of plant secondary metabolites on plant defence have been studied for decades, the exact roles of secondary metabolites in shaping plant-associated microbial and nematode communities remain elusive. We evaluated the effects of benzoxazinoids, a group of secondary metabolites present in several cereals, on root-associated nematodes. We employed 18S rRNA metabarcoding to compare maize root-associated nematode communities in a bx1 knockout maize line impaired in benzoxazinoid synthesis and in its parental wild type. Both genotype and plant age affected the composition of the nematode community in the roots, and the effects of benzoxazinoids on nematode communities were stronger in the roots than in the rhizosphere. Differential abundance analysis and quantitative PCR showed that the root lesion nematode Pratylenchus neglectus was enriched in the bx1 mutant line, while another root lesion nematode, Pratylenchus crenatus, was reduced. Correlation analysis showed that benzoxazinoid concentrations in maize roots mostly correlated negatively with the relative abundance of nematode sequence reads. However, positive correlations between benzoxazinoids and nematode taxa, including several plant-parasitic nematodes, were also identified. Our detailed nematode community analysis suggests differential and selective effects of benzoxazinoids on soil nematodes depending on both the nematode species and the benzoxazinoid compound.


Assuntos
Benzoxazinas , Zea mays , Animais , Raízes de Plantas , Rizosfera , Solo , Zea mays/genética
11.
Mol Breed ; 41(12): 78, 2021 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-37309516

RESUMO

The root-lesion nematode Pratylenchus thornei Sher & Allen, 1953 is a damaging parasite of many crop plants, including the grain legume chickpea (Cicer arietinum L.). Within cultivated chickpea, there are no known sources of strong resistance to P. thornei, but some cultivars have partial resistance. In the research reported here, the genetic basis for differences in P. thornei resistance was analysed using a population derived by accelerated single seed descent from a cross between a partially resistant cultivar, PBA HatTrick, and a very susceptible cultivar, Kyabra. A genetic linkage map was constructed from genotyping-by-sequencing data. Two quantitative trait loci were mapped, one on the Ca4 chromosome and one on the Ca7 chromosome. The Ca7 locus had a greater and more consistent effect than the Ca4 locus. Marker assays designed for single nucleotide polymorphisms on Ca7 were applied to a panel of chickpea accessions. Some of these markers should be useful for marker-assisted selection in chickpea breeding. Haplotype analysis confirmed the Iranian landrace ICC14903 to be the source of the resistance allele in PBA HatTrick and indicated that other Australian cultivars inherited the same allele from other Iranian landraces. A candidate region was defined on the Ca7 pseudomolecule. Within that region, 69 genes have been predicted with high confidence. Among these, two have annotations related to biotic stress response. Three others have previously been reported to be expressed in roots of PBA HatTrick and Kyabra, including one that is more highly expressed in PBA HatTrick than in Kyabra. Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-021-01271-8.

12.
Int J Mol Sci ; 22(11)2021 May 30.
Artigo em Inglês | MEDLINE | ID: mdl-34070906

RESUMO

A rapid and accurate PCR-based method was developed in this study for detecting and identifying a new species of root-lesion nematode (Pratylenchus dakotaensis) recently discovered in a soybean field in North Dakota, USA. Species-specific primers, targeting the internal transcribed spacer region of ribosomal DNA, were designed to be used in both conventional and quantitative real-time PCR assays for identification of P.dakotaensis. The specificity of the primers was evaluated in silico analysis and laboratory PCR experiments. Results showed that only P.dakotaensis DNA was exclusively amplified in conventional and real-time PCR assays but none of the DNA from other control species were amplified. Detection sensitivity analysis revealed that the conventional PCR was able to detect an equivalent to 1/8 of the DNA of a single nematode whereas real-time PCR detected an equivalent to 1/32 of the DNA of a single nematode. According to the generated standard curve the amplification efficiency of the primers in real-time PCR was 94% with a R2 value of 0.95 between quantification cycle number and log number of P.dakotaensis. To validate the assays to distinguish P.dakotaensis from other Pratylenchus spp. commonly detected in North Dakota soybean fields, 20 soil samples collected from seven counties were tested. The PCR assays amplified the DNA of P.dakotaensis and discriminated it from other Pratylenchus spp. present in North Dakota soybean fields. This is the first report of a species-specific and rapid PCR detection method suitable for use in diagnostic and research laboratories for the detection of P.dakotaensis.


Assuntos
DNA de Helmintos/genética , Glycine max/parasitologia , Reação em Cadeia da Polimerase em Tempo Real/métodos , Tylenchoidea/genética , Animais , Primers do DNA/síntese química , Primers do DNA/metabolismo , Limite de Detecção , North Dakota , Doenças das Plantas/parasitologia , Raízes de Plantas/parasitologia , Solo/parasitologia , Especificidade da Espécie , Tylenchoidea/classificação , Tylenchoidea/isolamento & purificação
13.
J Nematol ; 532021.
Artigo em Inglês | MEDLINE | ID: mdl-34901874

RESUMO

Pratylenchus smoliki is a new species of root-lesion nematode described from corn-soybean production fields in the Central Great Plains of North America. It is characterized by populations with relatively abundant males, two lip annuli, females with a round functional spermatheca and a conoid to subcylindrical tail with a non-crenate, smooth terminus. In host preference tests, corn and wheat produce the largest nematode populations, whereas sorghum and soybeans produce less than 20% the numbers observed on corn. Scanning electron microscopy reveals that the en face patterns compare to those seen in Pratylenchus pseudocoffeae, P. scribneri, P. hexincisus, and P. alleni. The pattern is described as rectangular to trapezoidal subdorsal and subventral lips adjoining oral disc, but with a clear demarcation between the oral disc and the subdorsal and subventral sectors. A Maximum Likelihood COI tree recognizes P. smoliki as a moderately-well-supported clade with several haplotype subgroups. A Maximum Likelihood partial 28S tree provides strong support for the P. smoliki clade and reinforces the close relationships between species with similar en face patterns. Topotype specimens of P. alleni were demonstrably different from P. smoliki using DNA markers. The geographic range of P. smoliki overlaps with the ranges of P. alleni, P. scribneri, P. neglectus, P. hexicisus, and P. dakotaensis. The observed host range (corn, rye, sunflower, and wheat) suggests that P. smoliki may be native to the tallgrass prairie region of the Great Plains.

14.
J Nematol ; 532021.
Artigo em Inglês | MEDLINE | ID: mdl-33860236

RESUMO

Roots of plants characteristic of the Brazilian caatinga showing necrosis symptoms were observed in Iguatu, CE, Brazil. To identify the species, morphological characterization was performed, through the morphometry of females, and molecular analysis of the ITS and 28S rDNA regions. The nematodes Pratylenchus zeae and P. brachyurus were identified as causal agents, confirming pathogenicity by Koch postulates. This is the first report of P. zeae and P. brachyurus in caaatinga plants in the state of Ceará, Brazil.

15.
Phytopathology ; 110(3): 674-683, 2020 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-31729928

RESUMO

The root lesion nematode Pratylenchus thornei causes economic losses in wheat and barley internationally through both reduced grain yield and grain quality. This study investigated the relationships between the presowing P. thornei density and grain yield and the postharvest nematode densities. Four field experiments were conducted at the same site between 2010 and 2014. A range of presowing P. thornei densities was established in the first year by growing three cereal cultivars that ranged from resistant to susceptible. In the following year, plots were sown with the five same cereal cultivars. A linear relationship was observed between the natural log of the presowing P. thornei density and grain yield across all seasons. The results showed that grain yield losses varied between cultivars and seasons. The importance of season was significant, with this study conducted over several seasons, and it highlighted the variability in yield losses between seasons, which will need further investigation. The greatest yield losses observed were 25 to 28% when the maximum presowing P. thornei densities ranged between 150 and 250 P. thornei g of soil-1. An analysis of the relationship between the presowing and postharvest nematode densities revealed that increased presowing nematode densities resulted in decreased multiplication rates in all seasons and in all cultivars. Nematode multiplication rates also varied between seasons. These results explain why it is difficult to predict nematode levels based on cropping history, and additionally, they highlight the importance of growing resistant cultivars to maintain low levels of P. thornei to minimize risk of yield losses.


Assuntos
Hordeum , Tylenchoidea , Animais , Grão Comestível , Doenças das Plantas , Triticum
16.
J Nematol ; 522020.
Artigo em Inglês | MEDLINE | ID: mdl-33829190

RESUMO

Pratylenchus penetrans is a common and important agricultural pest in Wisconsin, a USA state with a diverse agriculture. We compared populations from around the state to each other and to data published for populations around the world to gain insight on the variability of features important for identification of this cosmopolitan species. Thirteen isolates from samples collected in soybean fields in ten Wisconsin counties were established in monoxenic cultures. Analysis of morphological features revealed the least variable feature for all isolates collectively was vulva percentage. Features less variable within than among isolates were body width, lip region height, and stylet length. Some isolates showed only the smooth tail tip phenotype and others had a mix of smooth and annulated tail phenotypes. A suite of features provided sufficient pattern to group isolates into four clusters according to hierarchical agglomerative clustering and canonical discriminative analyses, but not with enough distinction to be useful for classification. Haplotype analysis based on the COI mitochondrial gene of the 13 cultured isolates, 39 Wisconsin field populations, and published sequences representing five additional USA states and six countries revealed 21 haplotypes, 15 of which occurred in Wisconsin. Ten haplotypes represented in Wisconsin were shared with populations from Europe, South America, Africa, or Asia. Five haplotypes were unique to Wisconsin, six were unique to The Netherlands, and one was unique to Japan suggesting that even more COI diversity will be revealed when more COI sequences for P. penetrans become available. The maximum pairwise sequence variation was 6% and the SNPs did not alter amino acids, indicating cryptic biodiversity within the species worldwide. The cosmopolitan to localized scale of distribution of COI haplotypes could be due to frequent and ongoing dispersal events, facilitated by life history traits and the broad host range of P. penetrans. Regions of diverse agriculture, like Wisconsin, show promise for studying this important pest and our study confirms the utility of the COI mtDNA gene for studying variation within a species.

17.
J Nematol ; 522020.
Artigo em Inglês | MEDLINE | ID: mdl-33829183

RESUMO

Pratylenchus vulnus (walnut root lesion nematode) is one of the most damaging root lesion nematode species worldwide. In this study, 17 populations of P. vulnus obtained from wheat and barley cultivated fields in 2016 to 2017 in Turkey (Karaman and Konya provinces) were identified using real-time PCR and melting curve analysis. Samples provided a single peak at 87.3˚C with real-time PCR. D2 to D3 expansion segments of the 28S rRNA of one population from Cihanbeyli district in Konya province was sequenced and recorded in GenBank (Accession number: MT320536.1). Alignments of the population was identical 98.66% to the populations of P. vulnus available in GenBank (Accs. nos: LT985479.1 and LT965052.1) and 98.65% (Accs. nos: KY424305.1 and KY424304.1).

18.
J Gen Virol ; 100(4): 704-708, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30869581

RESUMO

The root lesion nematode Pratylenchus penetrans is a migratory species that attacks a broad range of plants. While analysing transcriptomic datasets of P. penetrans, we have identified a full-length genome of an unknown positive-sense single-stranded RNA virus, provisionally named root lesion nematode virus 1 (RLNV1). The 8614-nucleotide genome sequence encodes a single large polyprotein with conserved domains characteristic for the families Picornaviridae, Iflaviridae and Secoviridae of the order Picornavirales. Phylogenetic, BLAST and domain search analyses showed that RLNV1 is a novel species, most closely related to the recently identified sugar beet cyst nematode virus 1 and potato cyst nematode picorna-like virus. In situ hybridization with a DIG-labelled DNA probe confirmed the presence of the virus within the nematodes. A negative-strand-specific RT-PCR assay detected RLNV1 RNA in nematode total RNA samples, thus indicating that viral replication occurs in P. penetrans. To the best of our knowledge, RLNV1 is the first virus identified in Pratylenchus spp.


Assuntos
Raízes de Plantas/parasitologia , Raízes de Plantas/virologia , Vírus de RNA/genética , Tylenchoidea/virologia , Animais , Filogenia , Picornaviridae/genética , Doenças das Plantas/parasitologia , Doenças das Plantas/virologia , Plantas/parasitologia , Plantas/virologia , RNA Viral/genética , Infecções por Secernentea , Transcriptoma/genética
19.
Phytopathology ; 109(7): 1270-1279, 2019 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-30895867

RESUMO

Pratylenchus thornei, a nematode species that feeds and reproduces in chickpea (Cicer arietinum) roots, is widespread throughout the Mediterranean basin and Indian subcontinent. In Australia, it can cause yield losses up to approximately 25% of intolerant chickpea cultivars. Potential for improvement has been hindered by the narrow genetic diversity of cultivated chickpea and a limited world collection of original wild Cicer spp. in the primary gene pool, consisting of 18 C. reticulatum and 10 C. echinospermum accessions. Recently, collections of C. reticulatum and C. echinospermum from Turkey have substantially increased the number of accessions. This study evaluated 133 C. reticulatum and 41 C. echinospermum accessions from the new collection for resistance to P. thornei under controlled conditions in repeated glasshouse pot experiments. The aim of the study was to identify accessions with resistance superior to that currently available in Australian germplasm. Both wild Cicer spp. were found, on average, to be more resistant to P. thornei (P < 0.001) than C. arietinum. Combined analyses across experiments to determine genetic rankings showed that 13 (7%) wild accessions were significantly more resistant than the most resistant C. echinospermum reference ILWC 246, while another 40 (23%) accessions were significantly more resistant than the least susceptible Australian chickpea cultivar PBA Seamer. Mean P. thornei population densities differed significantly between collection sites in Turkey and within each of the genetic population groups. The sites Kayatepe and Baristepe1, and genetic population groups Ret_A and Ret_F associated with sites Oyali and Baristepe1, produced the lowest P. thornei population densities. This is the first report assessing the resistance to P. thornei of this new collection which offers novel sources of P. thornei resistance and untapped genetic diversity valuable for international chickpea breeding programs to exploit.


Assuntos
Cicer , Doenças das Plantas/microbiologia , Tylenchoidea , Animais , Austrália , Cicer/genética , Doenças das Plantas/genética , Turquia
20.
J Nematol ; 512019.
Artigo em Inglês | MEDLINE | ID: mdl-34179797

RESUMO

Hirschmanniella anchoryzae from Iran and Pratylenchus hippeastri from South Africa were recovered during a survey of plant-parasitic nematodes belonging to the family Pratylenchidae. Both species were studied using morphological and molecular techniques. Hirschmanniella anchoryzae is identified based on the flattened head, short stylet (19-22 µm), excretory pore position (anterior to pharyngo-intestinal junction), spicule length (27-30 µm), and existence of an axial mucro at the tail end. Phylogenetic analysis using 28S rDNA showed monophyly of Hirschmanniella which Iranian H. anchoryzae placed close to H. halophila (EU620464; EU620465). This result was supported by the principal component analysis of Hirschmanniella species. SEM observation of the South African population of P. hippeastri showed the presence of two annuli in the lip region. Morphometric characters resembled those of specimens earlier reported from South Africa. Hierarchal cluster using morphometrical criteria showed that the Floridian (USA) and South African populations form a group. However, the principal component analysis showed variation within this species. The molecular study of P. hippeastri populations using 18S, ITS, 28S rDNA, and COI of mtDNA showed that all P. hippeastri cluster in one group and confirmed the identification of the species using both morphological and molecular techniques. In addition, the results indicated that South African populations group close to the USA populations. Illustrations of both species including light and scanning electron microscopy observations for P. hippeastri are provided.

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