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1.
Cell ; 168(1-2): 200-209.e12, 2017 Jan 12.
Artigo em Inglês | MEDLINE | ID: mdl-28086091

RESUMO

Bacteria residing within biofilm communities can coordinate their behavior through cell-to-cell signaling. However, it remains unclear if these signals can also influence the behavior of distant cells that are not part of the community. Using a microfluidic approach, we find that potassium ion channel-mediated electrical signaling generated by a Bacillus subtilis biofilm can attract distant cells. Integration of experiments and mathematical modeling indicates that extracellular potassium emitted from the biofilm alters the membrane potential of distant cells, thereby directing their motility. This electrically mediated attraction appears to be a generic mechanism that enables cross-species interactions, as Pseudomonas aeruginosa cells also become attracted to the electrical signal released by the B. subtilis biofilm. Cells within a biofilm community can thus not only coordinate their own behavior but also influence the behavior of diverse bacteria at a distance through long-range electrical signaling. PAPERCLIP.


Assuntos
Bacillus subtilis/fisiologia , Biofilmes , Fenômenos Eletrofisiológicos , Pseudomonas aeruginosa/fisiologia , Biofilmes/classificação , Potenciais da Membrana , Técnicas Analíticas Microfluídicas , Modelos Biológicos , Potássio/metabolismo
2.
PLoS Pathog ; 15(5): e1007787, 2019 05.
Artigo em Inglês | MEDLINE | ID: mdl-31116789

RESUMO

Genotype-phenotype relationships can vary extensively among members of a species. One cause of this variation is circuit diversification, the alteration of gene regulatory relationships among members of a species. Circuit diversification is thought to be a starting point for the circuit divergence or rewiring that occurs during speciation. How widespread is circuit diversification? Here we address this question with the fungal pathogen Candida albicans, which forms biofilms rich in distinctive hyphal cells as a prelude to infection. Our understanding of the biofilm/hyphal regulatory network comes primarily from studies of one clinical isolate, strain SC5314, and its marked derivatives. We used CRISPR-based methods to create mutations of four key biofilm transcription factor genes-BCR1, UME6, BRG1, and EFG1 -in SC5314 and four additional clinical isolates. Phenotypic analysis revealed that mutations in BCR1 or UME6 have variable impact across strains, while mutations in BRG1 or EFG1 had uniformly severe impact. Gene expression, sampled with Nanostring probes and examined comprehensively for EFG1 via RNA-Seq, indicates that regulatory relationships are highly variable among isolates. Our results suggest that genotype-phenotype relationships vary in this strain panel in part because of differences in control of BRG1 by BCR1, a hypothesis that is supported through engineered constitutive expression of BRG1. Overall, the data show that circuit diversification is the rule, not the exception, in this biofilm/hyphal regulatory network.


Assuntos
Biofilmes/classificação , Biofilmes/crescimento & desenvolvimento , Candida albicans/classificação , Candidíase/genética , Proteínas Fúngicas/genética , Regulação Fúngica da Expressão Gênica , Hifas/genética , Candida albicans/genética , Candidíase/virologia , Estudos de Associação Genética , Especiação Genética , Humanos , Hifas/crescimento & desenvolvimento , Transdução de Sinais , Fatores de Transcrição
3.
J Appl Microbiol ; 126(4): 1032-1043, 2019 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-30659724

RESUMO

AIMS: To describe the biofilm microbiota associated with various feeding phases during larval common dentex (Dentex dentex) culture. METHODS AND RESULTS: A targeted metagenomic (metagenetic) study was performed by means of 16S rRNA gene-based PCR and NextGen pyrosequencing. The resulting dataset was scrutinized with microbial community analysis software (r packages) using r/Rstudio. While median observed and estimated alpha-diversities were 171 ± 38 and 207 ± 27 taxa, respectively, 72·1-85·8% of individual biofilm communities comprised only 27-46 taxa. Members of the genus Methylobacterium and family Rhodobacteraceae dominated biofilms formed during all feeding phases while genera Nannochloropsis and Tetraselmis microalgae were major constituents of biofilms during rotifer live feeding. Both potential fish pathogenic genera, for example, Vibrio and putatively probiotic taxa, for example, Phaeobacter gallaeciensis were identified. CONCLUSIONS: Relatively stable biofilm communities were identified during each feeding phase but varied significantly between feeding phases, most likely in response to the introduction of live feed/microalgae-associated bacteria into rearing tanks. SIGNIFICANCE AND IMPACT OF THE STUDY: The structure of the bacterial communities identified represents a 'template' for successful larval dentex culture and provides a foundation for future investigations into failed production cycles.


Assuntos
Biofilmes/crescimento & desenvolvimento , Estágios do Ciclo de Vida , Microbiota/genética , Perciformes/crescimento & desenvolvimento , Perciformes/microbiologia , Ração Animal/análise , Animais , Bactérias/classificação , Bactérias/genética , Bactérias/isolamento & purificação , Biofilmes/classificação , Metagenômica , RNA Ribossômico 16S/genética
4.
Biofouling ; 35(2): 230-243, 2019 02.
Artigo em Inglês | MEDLINE | ID: mdl-30950294

RESUMO

Bacteria produce metamorphosis-associated contractile (MAC) structures to induce larval metamorphosis in Hydroides elegans. The distribution and diversity of mac gene homologs in marine environments are largely unexplored. In the present study mac genes were examined in marine environments by analyzing 101 biofilm and 91 seawater metagenomes. There were more mac genes in biofilms than in seawater, and substratum type, location, or sampling time did not affect the mac genes in biofilms. The mac gene clusters were highly diverse and often incomplete while the three MAC components co-occurred with other genes of different functions. Genomic analysis of four Pseudoalteromonas and two Streptomyces strains revealed the mac genes transfers among different microbial taxa. It is proposed that mac genes are more specific to biofilms; gene transfer among different microbial taxa has led to highly diverse mac gene clusters; and in most cases, the three MAC components function individually rather than forming a complex.


Assuntos
Biofilmes/classificação , Metagenoma , Metamorfose Biológica/genética , Pseudoalteromonas/genética , Água do Mar/microbiologia , Streptomyces/genética , Animais , Família Multigênica , Poliquetos/genética
5.
Anal Chem ; 90(1): 988-997, 2018 01 02.
Artigo em Inglês | MEDLINE | ID: mdl-29211965

RESUMO

By direct analysis of water purification membranes using ambient ionization mass spectrometry, an attempt has been made to understand the molecular signatures of bacterial fouling. Membrane based purification methods are used extensively in water treatment, and a major challenge for them is biofouling. The buildup of microbes and their extracellular polymeric matrix clog the purification membranes and reduce their efficiency. To understand the early stages of bacterial fouling on water purification membranes, we have used desorption electrospray ionization mass spectrometry (DESI MS), where ion formation occurs in ambient conditions and the ionization event is surface sensitive. Biosurfactants at the air-water interface generated by microorganisms as a result of quorum sensing, influence the water-membrane interface and are important for the bacterial attachment. We show that these biosurfactants produced by bacteria can be indicator molecular species signifying initiation of biofilms on membrane surfaces, demonstrated by specific DESI MS signatures. In Pseudomonas aeruginosa, one of the best studied models for biofilm formation, this process is mediated by rhamnolipids forewarning bacterial fouling. Species dependent variation of such molecules can be used for the precise identification of the microorganisms, as revealed by studies on P. aeroginosa (ATCC 25619). The production of biosurfactants is tightly regulated at the transcriptional level by the quorum-sensing (QS) response. Thus, secretion of these extracellular molecules across the membrane surface allows rapid screening of the biofilm community. We show that, the ambient ionization mass spectrometry can detect certain toxic heavy metals present in water, using surfactant-metal complexes as analytes. We believe that such studies conducted on membranes in various input water streams will help design suitable membrane processes specific to the input streams.


Assuntos
Biofilmes/crescimento & desenvolvimento , Incrustação Biológica , Membranas Artificiais , Tensoativos/análise , Purificação da Água/instrumentação , Bacillus subtilis/metabolismo , Biofilmes/classificação , Glicolipídeos/química , Metais Pesados/análise , Metais Pesados/química , Pseudomonas aeruginosa/metabolismo , Espectrometria de Massas por Ionização por Electrospray/métodos
6.
Biofouling ; 34(2): 200-211, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29405091

RESUMO

Two non-destructive techniques, confocal laser scanning microscopy (CLSM) and planar optode (VisiSens imaging), were combined to relate the fine-scale spatial structure of biofilm components to real-time images of oxygen decay in aquatic biofilms. Both techniques were applied to biofilms grown for seven days at contrasting light and temperature (10/20°C) conditions. The geo-statistical analyses of CLSM images indicated that biofilm structures consisted of small (~100 µm) and middle sized (~101 µm) irregular aggregates. Cyanobacteria and EPS (extracellular polymeric substances) showed larger aggregate sizes in dark grown biofilms while, for algae, aggregates were larger in light-20°C conditions. Light-20°C biofilms were most dense while 10°C biofilms showed a sparser structure and lower respiration rates. There was a positive relationship between the number of pixels occupied and the oxygen decay rate. The combination of optodes and CLMS, taking advantage of geo-statistics, is a promising way to relate biofilm architecture and metabolism at the micrometric scale.


Assuntos
Biofilmes/crescimento & desenvolvimento , Processamento de Imagem Assistida por Computador , Microscopia Confocal , Oxigênio/análise , Biofilmes/classificação , Biopolímeros/análise , Clorófitas/química , Clorófitas/crescimento & desenvolvimento , Cianobactérias/química , Cianobactérias/crescimento & desenvolvimento , Espaço Extracelular/química
7.
Adv Dent Res ; 29(1): 71-77, 2018 02.
Artigo em Inglês | MEDLINE | ID: mdl-29355422

RESUMO

Understanding the microbiology of dental caries is not a mere academic exercise; it provides the basis for preventive, diagnostic, and treatment strategies and gives the dentist a theoretical framework to become a better professional. The last years have seen the development of new research methodologies, ranging from high-throughput sequencing or "omics" techniques to new fluorescence microscopy applications and microfluidics, which have allowed the study of the oral microbiome to an unprecedented level of detail. Those studies have provided new insights about oral biofilm formation, biomarkers of caries risk, microbial etiology, appropriate sampling, identification of health-associated bacteria, and new anticaries strategies, among others. Several pitfalls are associated with the new technologies, including a small number of samples per study group, elevated cost, and genus- or species-based analyses that do not take into consideration intraspecies variability. However, the new data strongly suggest that saliva may not be an appropriate sample for etiological studies or for bacterial caries-risk tests, that microbial composition alone may be insufficient to predict caries risk, and that antimicrobial or immunization strategies targeting single species are unlikely to be effective. Strategies directed toward modulation of the oral biofilm, such as pre- and probiotics, emerge as promising new approaches to prevent tooth decay.


Assuntos
Cárie Dentária/microbiologia , Cárie Dentária/prevenção & controle , Microbiota/fisiologia , Boca/microbiologia , Bactérias/classificação , Biofilmes/classificação , Biomarcadores/análise , Cárie Dentária/imunologia , Humanos , Hibridização in Situ Fluorescente/métodos , Metagenômica , Microfluídica , Prebióticos , Probióticos/farmacologia , Saliva/microbiologia
8.
Artigo em Inglês | MEDLINE | ID: mdl-28971863

RESUMO

The biofilm life cycle is characterized by the transition of planktonic cells exhibiting high susceptibly to antimicrobial agents to a biofilm mode of growth characterized by high tolerance to antimicrobials, followed by dispersion of cells from the biofilm back into the environment. Dispersed cells, however, are not identical to planktonic cells but have been characterized as having a unique transitionary phenotype relative to biofilm and planktonic cells, with dispersed cells attaching in a manner similar to exponential-phase cells, but demonstrating gene expression patterns that are distinct from both exponential and stationary-phase planktonic cells. This raised the question whether dispersed cells are as susceptible as planktonic cells and whether the dispersion inducer or the antibiotic class affects the drug susceptibility of dispersed cells. Dispersed cells obtained in response to dispersion cues glutamate and nitric oxide (NO) were thus exposed to tobramycin and colistin. Although NO-induced dispersed cells were as susceptible to colistin and tobramycin as exponential-phase planktonic cells, glutamate-induced dispersed cells were susceptible to tobramycin but resistant to colistin. The difference in colistin susceptibility was independent of cellular c-di-GMP levels, with modulation of c-di-GMP failing to induce dispersion. Instead, drug susceptibility was inversely correlated with LPS modification system and the biofilm-specific transcriptional regulator BrlR. The susceptibility phenotype of glutamate-induced dispersed cells to colistin was found to be reversible, with dispersed cells being rendered as susceptible to colistin within 2 h postdispersion, though additional time was required for dispersed cells to display expression of genes indicative of exponential growth.


Assuntos
Antibacterianos/farmacologia , Biofilmes/efeitos dos fármacos , Colistina/farmacologia , GMP Cíclico/análogos & derivados , Pseudomonas aeruginosa/efeitos dos fármacos , Tobramicina/farmacologia , Antibacterianos/classificação , Aderência Bacteriana/fisiologia , Biofilmes/classificação , Biofilmes/crescimento & desenvolvimento , GMP Cíclico/metabolismo , Farmacorresistência Bacteriana Múltipla/fisiologia , Regulação Bacteriana da Expressão Gênica , Ácido Glutâmico/metabolismo , Humanos , Testes de Sensibilidade Microbiana , Pseudomonas aeruginosa/genética , Pseudomonas aeruginosa/isolamento & purificação
9.
Environ Microbiol ; 19(6): 2405-2421, 2017 06.
Artigo em Inglês | MEDLINE | ID: mdl-28489281

RESUMO

Modern phototrophic microbial mats are complex communities often used as analogs of major Precambrian ecosystems. Characterizing biotic, notably metabolic, interactions among different microbial mat members is essential to gain insights into the ecology and biogeochemistry of these systems. We applied 16S/18S rRNA metabarcoding approaches to characterize the structure of archaea, bacteria and protist communities from microbial mats collected along strong physicochemical (oxygen, salinity, temperature, depth) gradients in a shallow pond at the salar de Llamara (Chile). All mats were highly diverse, including members of virtually all known high-rank eukaryotic and prokaryotic taxa but also many novel lineages. Bacterial candidate divisions accounted for almost 50% of sequences in deeper mats, while Archaea represented up to 40% of sequences in some mat layers. Molecular phylogenetic analyses revealed six novel deeply divergent archaeal groups, along abundant and diverse Pacearchaeota and Woesearchaeota. Multivariate statistical analyses showed that local environmental conditions strongly influenced community composition. Co-occurrence network structure was markedly different between surface mats located in the oxygenated zone and mats located in transition and anoxic water layers. We identified potential biotic interactions between various high- and low-rank taxa. Notably, a strong positive correlation was observed between Lokiarchaeota and the poorly known candidate bacterial division TA06.


Assuntos
Archaea/classificação , Bactérias/classificação , Biofilmes/classificação , Interações Microbianas/fisiologia , Parasitos/classificação , Lagoas/microbiologia , Animais , Archaea/genética , Bactérias/genética , Biodiversidade , Biofilmes/crescimento & desenvolvimento , Chile , Ecossistema , Parasitos/genética , Processos Fototróficos/fisiologia , Filogenia , RNA Ribossômico 16S/genética , RNA Ribossômico 18S/genética , Salinidade
10.
Biofouling ; 33(10): 793-806, 2017 11.
Artigo em Inglês | MEDLINE | ID: mdl-28994320

RESUMO

In this study, next generation sequencing and catalyzed reporter deposition fluorescence in situ hybridization, combined with confocal microscopy, were used to provide insights into the biodiversity and structure of biofilms collected from four full-scale European cooling systems. Water samples were also analyzed to evaluate the impact of suspended microbes on biofilm formation. A common core microbiome, containing members of the families Sphingomonadaceae, Comamonadaceae and Hyphomicrobiaceae, was found in all four biofilms, despite the water of each coming from different sources (river and groundwater). This suggests that selection of the pioneer community was influenced by abiotic factors (temperature, pH) and tolerances to biocides. Members of the Sphingomonadaceae were assumed to play a key role in initial biofilm formation. Subsequent biofilm development was driven primarily by light availability, since biofilms were dominated by phototrophs in the two studied 'open' systems. Their interactions with other microbial populations then shaped the structure of the mature biofilm communities analyzed.


Assuntos
Biodiversidade , Biofilmes/classificação , Microbiota/genética , Desinfetantes/farmacologia , Indústria Farmacêutica , Água Subterrânea/microbiologia , Sequenciamento de Nucleotídeos em Larga Escala , Hibridização in Situ Fluorescente , Testes de Sensibilidade Microbiana , Microbiota/efeitos dos fármacos , Indústria de Petróleo e Gás , Rios/microbiologia
11.
World J Microbiol Biotechnol ; 33(7): 149, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28638986

RESUMO

Increasing attention is being paid to the adoption of photoautotrophic microbes in bioelectrochemical systems (BESs) because of the advantages of self-sustainability. Biased potential on the anode was capable of adjusting the performance of non-photo BESs, and the microbial community structure was also changed; however, few studies have been conducted to investigate the effects of potential on microbial community structure in photo-BESs. In this work, the response of microbial community structure to different potentials (i.e., 0, 0.2, 0.4 and 0.6 V vs. Ag/AgCl) was characterized with 454 pyrosequencing. Four samples were collected and they generated 42865 16S rDNA sequencing reads with an average length of 429 bp. The potential at 0.2 V resulted in the highest current density (378.8 mA m-2) and showed a strong selection for γ-proteobacteria (30.8% of the sequences). α-Diversity analysis showed that microbial diversity increased with increased potential. Rhodopseudomonas palustris was dominant among known exoelectrogens in the biofilm biased at 0.4 V. The results provided an insight into the mechanism of potential regulation on the performance of photo-BESs and changes in microbial community structure.


Assuntos
Fontes de Energia Bioelétrica/microbiologia , Gammaproteobacteria/classificação , Análise de Sequência de DNA/métodos , Biofilmes/classificação , DNA Bacteriano/análise , DNA Ribossômico/análise , Eletrodos , Gammaproteobacteria/genética , Gammaproteobacteria/isolamento & purificação , Filogenia , RNA Ribossômico 16S/análise
12.
Environ Microbiol ; 18(12): 4794-4816, 2016 12.
Artigo em Inglês | MEDLINE | ID: mdl-27235544

RESUMO

The Fishing House located on the grounds of the Marquis of Pombal Palace, Oeiras, Portugal, was built in the 18th century. During this epoch, Portuguese gardens, such as the one surrounding the Fishing House, were commonly ornamented with glazed wall tile claddings. Currently, some of these outdoor tile panels are covered with dark colored biofilms, contributing to undesirable aesthetic changes and eventually inducing chemical and physical damage to the tile surfaces. Phylogenetic analyses revealed that the investigated biofilms are mainly composed of green algae, cyanobacteria and dematiaceous fungi. With the aim of mitigating biodeterioration, four different biocides (TiO2 nanoparticles, Biotin® T, Preventol® RI 80 and Albilex Biostat® ) were applied in situ to the glazed wall tiles. Their efficacy was monitored by visual examination, epifluorescence microscopy and DNA-based analysis. Significant changes in the microbial community composition were observed 4 months after treatment with Preventol® RI 80 and Biotin® T. Although the original community was inactivated after these treatments, an early stage of re-colonization was detected 6 months after the biocide application. TiO2 nanoparticles showed promising results due to their self-cleaning effect, causing the detachment of the biofilm from the tile surface, which remained clean 6 and even 24 months after biocide application. © 2013 Society for Applied Microbiology and John Wiley & Sons Ltd.


Assuntos
Biofilmes/classificação , Cerâmica , Desinfetantes/farmacologia , Biofilmes/efeitos dos fármacos , Clorófitas/classificação , Cianobactérias/classificação , Cianobactérias/efeitos dos fármacos , Fungos/classificação , Fungos/efeitos dos fármacos , Filogenia , Portugal
13.
J Calif Dent Assoc ; 44(7): 447-56, 2016 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-27514156

RESUMO

Around one-third of oral bacteria cannot be cultured using conventional methods. Some bacteria have specific requirements for nutrients while others may be inhibited by substances in the culture media or produced by other bacteria. Oral bacteria have evolved as part of multispecies biofilms, and many thus require interaction with other bacterial species to grow. In vitro models have been developed that mimic these interactions and have been used to grow previously uncultivated organisms.


Assuntos
Bactérias/classificação , Microbiota/fisiologia , Boca/microbiologia , Bactérias Anaeróbias/classificação , Técnicas Bacteriológicas , Bacteroidetes/classificação , Biofilmes/classificação , Firmicutes/classificação , Humanos
14.
Environ Microbiol ; 17(12): 5036-47, 2015 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-26013911

RESUMO

Changes in riparian vegetation or water turbidity and browning in streams alter the local light regime with potential implications for stream biofilms and ecosystem functioning. We experimented with biofilms in microcosms grown under a gradient of light intensities (range: 5-152 µmole photons s(-1) m(-2) ) and combined 454-pyrosequencing and enzymatic activity assays to evaluate the effects of light on biofilm structure and function. We observed a shift in bacterial community composition along the light gradient, whereas there was no apparent change in alpha diversity. Multifunctionality, based on extracellular enzymes, was highest under high light conditions and decoupled from bacterial diversity. Phenol oxidase activity, involved in the degradation of polyphenolic compounds, was twice as high on average under the lowest compared with the highest light condition. This suggests a shift in reliance of microbial heterotrophs on biofilm phototroph-derived organic matter under high light availability to more complex organic matter under low light. Furthermore, extracellular enzyme activities correlated with nutrient cycling and community respiration, supporting the link between biofilm structure-function and biogeochemical fluxes in streams. Our findings demonstrate that changes in light availability are likely to have significant impacts on biofilm structure and function, potentially affecting stream ecosystem processes.


Assuntos
Bactérias/metabolismo , Biofilmes/classificação , Luz , Rios/microbiologia , Microbiologia da Água , Biodiversidade , Ecossistema , Monofenol Mono-Oxigenase/metabolismo , Plantas/microbiologia , Água/química
15.
Environ Microbiol ; 17(5): 1738-52, 2015 May.
Artigo em Inglês | MEDLINE | ID: mdl-25244154

RESUMO

Roman Catacombs are affected by different kinds of biofilms that were extensively investigated in the last 14 years. In particular, the areas far from the lamps are often covered by white biofilms of different extension, consistency and nature. The aim of this paper is to describe the profile of the microbial community present in two areas of the Ocean's Cubiculum (CSC13), characterized by similar alterations described as white biofilms, by using a multistep approach that included direct microscopy observations, culture-dependent and culture-independent methodologies through the extraction of DNA and RNA directly from the sampled areas. In addition to this, we extracted the DNA directly from the Petri dishes containing R2A and B4 media after incubation and growth of bacteria. Our results evidenced that a complex bacterial community (mainly constituted by filamentous Actinobacteria, as well as Firmicutes and Proteobacteria) colonizes the two different white biofilms, and its detection, quantitative and qualitative, could be revealed only by different approaches, each method giving different information that only partially overlap.


Assuntos
Actinobacteria/genética , Bacteroidetes/genética , Biofilmes/classificação , Cavernas/microbiologia , Proteobactérias/genética , Actinobacteria/isolamento & purificação , Bacteroidetes/isolamento & purificação , Microbiota/genética , Filogenia , Proteobactérias/isolamento & purificação , RNA Ribossômico 16S/genética , Cidade de Roma , Microbiologia do Solo
16.
Microb Ecol ; 69(2): 281-92, 2015 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-25213654

RESUMO

Four pilot-scale test mesocosms were conducted for the remediation of organochlorine pesticides (OCPs)-contaminated aged soil. The results indicate that the effects on degradation of hexachlorocyclohexanes (HCHs) and dichlorodiphenyltrichloroethanes (DDTs) were in the following order: nutrients/plant bioaugmentation (81.18 % for HCHs; 85.4 % for DDTs) > nutrients bioaugmentation > plant bioaugmentation > only adding water > control, and nutrients/plant bioaugmentation greatly enhanced the degradation of HCHs (81.18 %) and DDTs (85.4 %). The bacterial community structure, diversity and composition were assessed by 454-pyrosequencing of 16S recombinant RNA (rRNA), whereas the abundance of linA gene was determined by quantitative polymerase chain reaction. Distinct differences in bacterial community composition, structure, and diversity were a function of remediation procedure. Predictability of HCH/DDT degradation in soils was also investigated. A positive correlation between linA gene abundance and the removal ratio of HCHs was indicated by correlation analyses. A similar relationship was also confirmed between the degradation of HCHs/DDTs and the abundance of some assemblages (Gammaproteobacteria and Flavobacteria). Our results offer microbial ecological insight into the degradation of HCHs and DDTs in aged contaminated soil, which is helpful for the intensification of bioremediation through modifying plant-microbe patterns, and cessation of costly and time-consuming assays.


Assuntos
DDT/química , Monitoramento Ambiental/métodos , Hexaclorocicloexano/química , Microbiologia do Solo , Bactérias/classificação , Bactérias/crescimento & desenvolvimento , Bactérias/isolamento & purificação , Proteínas de Bactérias/genética , Proteínas de Bactérias/metabolismo , Biodegradação Ambiental , Biodiversidade , Biofilmes/classificação , Biofilmes/crescimento & desenvolvimento , China , DNA Bacteriano/genética , Sedimentos Geológicos/química , Sedimentos Geológicos/microbiologia , Hidrocarbonetos Clorados/química , Praguicidas/química , Projetos Piloto , Plantas , RNA Ribossômico 16S/genética , Rios/química , Rios/microbiologia , Análise de Sequência de DNA , Poluentes do Solo/química
17.
Anal Bioanal Chem ; 407(22): 6803-13, 2015 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-26123442

RESUMO

Both biofilm formations as well as planktonic cells of water bacteria such as diverse species of the Legionella genus as well as Pseudomonas aeruginosa, Klebsiella pneumoniae, and Escherichia coli were examined in detail by Raman microspectroscopy. Production of various molecules involved in biofilm formation of tested species in nutrient-deficient media such as tap water was observed and was particularly evident in the biofilms formed by six Legionella species. Biofilms of selected species of the Legionella genus differ significantly from the planktonic cells of the same organisms in their lipid amount. Also, all Legionella species have formed biofilms that differ significantly from the biofilms of the other tested genera in the amount of lipids they produced. We believe that the significant increase in the synthesis of this molecular species may be associated with the ability of Legionella species to form biofilms. In addition, a combination of Raman microspectroscopy with chemometric approaches can distinguish between both planktonic form and biofilms of diverse bacteria and could be used to identify samples which were unknown to the identification model. Our results provide valuable data for the development of fast and reliable analytic methods based on Raman microspectroscopy, which can be applied to the analysis of tap water-adapted microorganisms without any cultivation step.


Assuntos
Bactérias/isolamento & purificação , Biofilmes/classificação , Plâncton/isolamento & purificação , Análise Espectral Raman/métodos , Microbiologia da Água , Bactérias/química , Plâncton/química
18.
Clin Orthop Relat Res ; 473(11): 3638-46, 2015 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-26265208

RESUMO

BACKGROUND: Established bacterial diagnostic techniques for orthopaedic-related infections rely on a combination of imperfect tests that often can lead to negative culture results. Spectroscopy is a tool that potentially could aid in rapid detection and differentiation of bacteria in implant-associated infections. QUESTIONS/PURPOSES: We asked: (1) Can principal component analysis explain variation in spectral curves for biofilm obtained from Staphylococcus aureus, Staphylococcus epidermidis, and Pseudomonas aeruginosa? (2) What is the accuracy of Fourier transformed-near infrared (FT-NIR)/multivariate data analysis in identifying the specific species associated with biofilm? METHODS: Three clinical isolates, S aureus, S epidermidis, and P aeruginosa were cultured to create biofilm on surgical grade stainless steel. At least 52 samples were analyzed per group using a FT-NIR spectrometer. Multivariate and principal component analyses were performed on the spectral data to allow for modeling and identification of the bacterial species. RESULTS: Spectral analysis was able to correctly identify 86% (37/43) of S aureus, 89% (16/18) of S epidermidis, and 70% (28/40) of P aeruginosa samples with minimal error. Overall, models developed using spectral data preprocessed using a combination of standard normal variant and first-derivative transformations performed much better than models developed with the raw spectral data in discriminating between the three classes of bacteria because of its low Type 1 error and large intermodel distinction. CONCLUSIONS: The use of spectroscopic methods to identify and classify bacterial biofilms on orthopaedic implant material is possible and improves with advanced modeling that can be obtained rapidly with little error. The sensitivity for identification was 97% for S aureus (95% CI, 88-99%), 100% for S epidermidis (95% CI, 95-100%), and 77% for P aeruginosa (95% CI, 65-86%). The specificity of the S aureus was 86% (95% CI, 3-93%), S epidermidis was 89% (95% CI, 67-97%), and P aeruginosa was 70% (95% CI, 55-82%). CLINICAL RELEVANCE: This technique of spectral data acquisition and advanced modeling should continue to be explored as a method for bacterial biofilm identification. A spectral databank of bacterial and potentially contaminating tissues should be acquired initially through an in vivo animal model and quickly transition to explanted devices and the clinical arena.


Assuntos
Técnicas Bacteriológicas , Biofilmes , Próteses e Implantes/efeitos adversos , Infecções Relacionadas à Prótese/diagnóstico , Infecções por Pseudomonas/diagnóstico , Pseudomonas aeruginosa/crescimento & desenvolvimento , Espectroscopia de Infravermelho com Transformada de Fourier , Infecções Estafilocócicas/diagnóstico , Staphylococcus aureus/isolamento & purificação , Staphylococcus epidermidis/isolamento & purificação , Biofilmes/classificação , Biofilmes/crescimento & desenvolvimento , Análise Multivariada , Valor Preditivo dos Testes , Análise de Componente Principal , Próteses e Implantes/microbiologia , Desenho de Prótese , Infecções Relacionadas à Prótese/microbiologia , Infecções por Pseudomonas/microbiologia , Aço Inoxidável , Infecções Estafilocócicas/microbiologia , Staphylococcus aureus/classificação , Staphylococcus aureus/crescimento & desenvolvimento , Staphylococcus epidermidis/classificação , Staphylococcus epidermidis/crescimento & desenvolvimento
19.
Int Endod J ; 48(10): 916-25, 2015 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-26172346

RESUMO

AIM: To investigate the relationship between protease production and the ability of Enterococcus faecalis strains to coexist in biofilms with other bacteria commonly recovered from infected root canals. METHODOLOGY: Biofilms with bacteria in mono-, dual- and four-species communities were developed in flow chambers. The organisms used were Lactobacillus salivarius, Streptococcus gordonii and Actinomyces naeslundii and E. faecalis strains, GUL1 and OG1RF. Biovolume and species distribution were examined using 16S rRNA fluorescence in situ hybridization in combination with confocal microscopy and image analysis. The full proteome of the E. faecalis strains was studied using two-dimensional gel electrophoresis. Spots of interest were identified using tandem mass spectroscopy and quantified using Delta 2D software. RESULTS: All bacteria formed biofilms and an anova analysis revealed that the biofilm biomass increased significantly (P ≤ 0.01) between 6 and 24 h. L. salivarius, S. gordonii and A. naeslundii formed mutualistic biofilm communities, and this pattern was unchanged when E. faecalis GUL1 was included in the consortium. However, with OG1RF, L. salivarius and S. gordonii were outcompeted in a 24-h biofilm. Proteomic analysis revealed that OG1RF secreted higher levels of proteases, GelE (P = 0.02) and SprE (P = 0.002) and a previously unidentified serine protease (P = 0.05), than GUL1. CONCLUSIONS: Different strains of E. faecalis can interact synergistically or antagonistically with a consortium of root canal bacteria. A possible mechanism underlying this, as well as potential differences in virulence, is production of different levels of proteases, which can cause detachment of neighbouring bacteria and tissue damage.


Assuntos
Actinomyces/fisiologia , Biofilmes/classificação , Cavidade Pulpar/microbiologia , Enterococcus faecalis/fisiologia , Ligilactobacillus salivarius/fisiologia , Consórcios Microbianos/fisiologia , Streptococcus gordonii/fisiologia , Actinomyces/isolamento & purificação , Técnicas Bacteriológicas , Biofilmes/crescimento & desenvolvimento , Biomassa , Eletroforese em Gel Bidimensional , Enterococcus faecalis/isolamento & purificação , Humanos , Hibridização in Situ Fluorescente , Ligilactobacillus salivarius/isolamento & purificação , Microscopia Confocal , Proteômica , RNA Ribossômico 16S , Tratamento do Canal Radicular , Streptococcus gordonii/isolamento & purificação , Espectrometria de Massas em Tandem , Virulência
20.
J Int Acad Periodontol ; 17(2): 49-57, 2015 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-26242011

RESUMO

OBJECTIVE: In a secondary data analysis, this pilot study evaluated the relationship between subgingival biofilm morphotypes and chronic periodontitis progression in treated adults. METHODS: Periodontal parameters in 47 adults with chronic periodontitis were assessed by a calibrated examiner at baseline and a mean 4.5 years after a non-surgical periodontal therapy regimen. Microbial and inflammatory cell morphotypes in subgingival biofilm specimens from each patient were evaluated with phase-contrast microscopy at baseline, and at post-treatment intervals. Chronic periodontitis progression in patients was defined as ≥ 2 teeth exhibiting ≥ 3 mm interproximal clinical periodontal attachment loss from baseline evaluations. Bivariate and odds ratio analysis assessed baseline and post-treatment variables relative to chronic periodontitis progression. RESULTS: Eight (17%) patients had chronic periodontitis progression. No baseline clinical, radiographic or microbiological variables, and no post-treatment clinical variables demonstrated statistically significant relationships with chronic periodontitis progression. Elevated post-treatment counts of subgingival spirochetes, medium to large-sized motile rods, and crevicular leukocytes, both alone and concurrently, appeared more frequently in patients experiencing chronic periodontitis progression. A post-treatment occurrence of high concurrent counts of subgingival spirochetes and crevicular leukocytes exhibited the strongest association with chronic periodontitis progression (odds ratio = 10.1; 95% Cl = 2.2, 45.4; p = 0.004), which was greater than with either morphotype alone. CONCLUSIONS: Joint morphotype analysis of subgingival spirochetes and crevicular leukocytes, as simplified biomarkers of pathogenic biofilm infection and host inflammatory responses in periodontal pockets, may be diagnostically useful in assessing risk of progressive disease in treated chronic periodontitis patients.


Assuntos
Bactérias/classificação , Periodontite Crônica/microbiologia , Gengiva/microbiologia , Leucócitos/patologia , Adulto , Carga Bacteriana , Biofilmes/classificação , Periodontite Crônica/patologia , Periodontite Crônica/terapia , Progressão da Doença , Feminino , Seguimentos , Gengiva/patologia , Humanos , Masculino , Microscopia de Contraste de Fase , Pessoa de Meia-Idade , Perda da Inserção Periodontal/microbiologia , Perda da Inserção Periodontal/patologia , Bolsa Periodontal/microbiologia , Bolsa Periodontal/patologia , Projetos Piloto , Spirochaetales/isolamento & purificação
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