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Multisystem altruistic metadynamics-Well-tempered variant.
Hosek, Petr; Kríz, Pavel; Toulcová, Daniela; Spiwok, Vojtech.
Affiliation
  • Hosek P; Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technická 5, Prague 6 166 28, Czech Republic.
  • Kríz P; Department of Mathematics, University of Chemistry and Technology, Technická 5, Prague 6 166 28, Czech Republic.
  • Toulcová D; Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technická 5, Prague 6 166 28, Czech Republic.
  • Spiwok V; Department of Biochemistry and Microbiology, University of Chemistry and Technology, Technická 5, Prague 6 166 28, Czech Republic.
J Chem Phys ; 146(12): 125103, 2017 Mar 28.
Article in En | MEDLINE | ID: mdl-28388169
ABSTRACT
Metadynamics method has been widely used to enhance sampling in molecular simulations. Its original form suffers two major drawbacks, poor convergence in complex (especially biomolecular) systems and its serial nature. The first drawback has been addressed by introduction of a convergent variant known as well-tempered metadynamics. The second was addressed by introduction of a parallel multisystem metadynamics referred to as altruistic metadynamics. Here, we combine both approaches into well-tempered altruistic metadynamics. We provide mathematical arguments and trial simulations to show that it accurately predicts free energy surfaces.

Full text: 1 Database: MEDLINE Language: En Journal: J Chem Phys Year: 2017 Type: Article Affiliation country: Czech Republic

Full text: 1 Database: MEDLINE Language: En Journal: J Chem Phys Year: 2017 Type: Article Affiliation country: Czech Republic