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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly.
Schneider, Valerie A; Graves-Lindsay, Tina; Howe, Kerstin; Bouk, Nathan; Chen, Hsiu-Chuan; Kitts, Paul A; Murphy, Terence D; Pruitt, Kim D; Thibaud-Nissen, Françoise; Albracht, Derek; Fulton, Robert S; Kremitzki, Milinn; Magrini, Vincent; Markovic, Chris; McGrath, Sean; Steinberg, Karyn Meltz; Auger, Kate; Chow, William; Collins, Joanna; Harden, Glenn; Hubbard, Timothy; Pelan, Sarah; Simpson, Jared T; Threadgold, Glen; Torrance, James; Wood, Jonathan M; Clarke, Laura; Koren, Sergey; Boitano, Matthew; Peluso, Paul; Li, Heng; Chin, Chen-Shan; Phillippy, Adam M; Durbin, Richard; Wilson, Richard K; Flicek, Paul; Eichler, Evan E; Church, Deanna M.
Affiliation
  • Schneider VA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Graves-Lindsay T; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Howe K; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Bouk N; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Chen HC; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Kitts PA; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Pruitt KD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Thibaud-Nissen F; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland 20894, USA.
  • Albracht D; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Fulton RS; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Kremitzki M; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Magrini V; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Markovic C; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • McGrath S; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Steinberg KM; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Auger K; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Chow W; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Collins J; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Harden G; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Hubbard T; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Pelan S; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Simpson JT; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Threadgold G; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Torrance J; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Wood JM; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Clarke L; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
  • Koren S; National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
  • Boitano M; Pacific Biosciences, Menlo Park, California 94025, USA.
  • Peluso P; Pacific Biosciences, Menlo Park, California 94025, USA.
  • Li H; Broad Institute, Cambridge, Massachusetts 02142, USA.
  • Chin CS; Pacific Biosciences, Menlo Park, California 94025, USA.
  • Phillippy AM; National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USA.
  • Durbin R; Wellcome Trust Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, United Kingdom.
  • Wilson RK; McDonnell Genome Institute at Washington University, St. Louis, Missouri 63018, USA.
  • Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SD, United Kingdom.
  • Eichler EE; Department of Genome Sciences, University of Washington School of Medicine, Seattle, Washington 98195, USA.
  • Church DM; Howard Hughes Medical Institute, University of Washington, Seattle, Washington 98195, USA.
Genome Res ; 27(5): 849-864, 2017 05.
Article in En | MEDLINE | ID: mdl-28396521
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Full text: 1 Database: MEDLINE Main subject: Software / Genome, Human / Sequence Analysis, DNA / Contig Mapping / Genomics Type of study: Prognostic_studies Limits: Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2017 Type: Article Affiliation country: United States
Fulltext
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Full text: 1 Database: MEDLINE Main subject: Software / Genome, Human / Sequence Analysis, DNA / Contig Mapping / Genomics Type of study: Prognostic_studies Limits: Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2017 Type: Article Affiliation country: United States