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Genomic insights of body plan transitions from bilateral to pentameral symmetry in Echinoderms.
Li, Yongxin; Omori, Akihito; Flores, Rachel L; Satterfield, Sheri; Nguyen, Christine; Ota, Tatsuya; Tsurugaya, Toko; Ikuta, Tetsuro; Ikeo, Kazuho; Kikuchi, Mani; Leong, Jason C K; Reich, Adrian; Hao, Meng; Wan, Wenting; Dong, Yang; Ren, Yaondong; Zhang, Si; Zeng, Tao; Uesaka, Masahiro; Uchida, Yui; Li, Xueyan; Shibata, Tomoko F; Bino, Takahiro; Ogawa, Kota; Shigenobu, Shuji; Kondo, Mariko; Wang, Fayou; Chen, Luonan; Wessel, Gary; Saiga, Hidetoshi; Cameron, R Andrew; Livingston, Brian; Bradham, Cynthia; Wang, Wen; Irie, Naoki.
Affiliation
  • Li Y; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
  • Omori A; Sado Island Center for Ecological Sustainability, Niigata University, Niigata, Japan.
  • Flores RL; Dept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
  • Satterfield S; Dept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
  • Nguyen C; Dept. of Biological Sciences, California State Univesity, Long Beach, CA, USA.
  • Ota T; SOKENDAI, Kanagawa, Japan.
  • Tsurugaya T; Urawa University, Saitama, Japan.
  • Ikuta T; Japan Agency for Marine-Earth Science and Technology (JAMSTEC), Kanagawa, Japan.
  • Ikeo K; Tokyo Metropolitan University, Yokosuka, Tokyo, Japan.
  • Kikuchi M; SOKENDAI, Kanagawa, Japan.
  • Leong JCK; Hokkaido University, Sapporo, Hokkaido, Japan.
  • Reich A; Dept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
  • Hao M; Providence Institute of Molecular Oogenesis, Brown University, Providence, RI, USA.
  • Wan W; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
  • Dong Y; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
  • Ren Y; Yunnan Agricultural University, Kunming, China.
  • Zhang S; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
  • Zeng T; Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
  • Uesaka M; Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
  • Uchida Y; RIKEN Center for Biosystems Dynamics Research (BDR), Kobe, Hyogo, Japan.
  • Li X; Dept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
  • Shibata TF; Universal Biology Institute, University of Tokyo, Tokyo, Japan.
  • Bino T; State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China.
  • Ogawa K; Dept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
  • Shigenobu S; NIBB Core Research Facilities, National Institute of Basic Biology, Okazaki, Aichi, Japan.
  • Kondo M; Faculty of Social and Cultural Studies, Kyushu University, Fukuoka, Japan.
  • Wang F; NIBB Core Research Facilities, National Institute of Basic Biology, Okazaki, Aichi, Japan.
  • Chen L; Dept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
  • Wessel G; Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
  • Saiga H; Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.
  • Cameron RA; Key Laboratory of Systems Biology, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou, China.
  • Livingston B; Providence Institute of Molecular Oogenesis, Brown University, Providence, RI, USA.
  • Bradham C; Tokyo Metropolitan University, Yokosuka, Tokyo, Japan.
  • Wang W; Dept. of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.
  • Irie N; Chuo University, Tokyo, Japan.
Commun Biol ; 3(1): 371, 2020 07 10.
Article in En | MEDLINE | ID: mdl-32651448
ABSTRACT
Echinoderms are an exceptional group of bilaterians that develop pentameral adult symmetry from a bilaterally symmetric larva. However, the genetic basis in evolution and development of this unique transformation remains to be clarified. Here we report newly sequenced genomes, developmental transcriptomes, and proteomes of diverse echinoderms including the green sea urchin (L. variegatus), a sea cucumber (A. japonicus), and with particular emphasis on a sister group of the earliest-diverged echinoderms, the feather star (A. japonica). We learned that the last common ancestor of echinoderms retained a well-organized Hox cluster reminiscent of the hemichordate, and had gene sets involved in endoskeleton development. Further, unlike in other animal groups, the most conserved developmental stages were not at the body plan establishing phase, and genes normally involved in bilaterality appear to function in pentameric axis development. These results enhance our understanding of the divergence of protostomes and deuterostomes almost 500 Mya.
Subject(s)

Full text: 1 Database: MEDLINE Main subject: Stichopus / Lytechinus / Echinodermata Limits: Animals Language: En Journal: Commun Biol Year: 2020 Type: Article Affiliation country: China

Full text: 1 Database: MEDLINE Main subject: Stichopus / Lytechinus / Echinodermata Limits: Animals Language: En Journal: Commun Biol Year: 2020 Type: Article Affiliation country: China