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Isotope-Edited Amide II Mode: A New Label for Site-Specific Vibrational Spectroscopy.
Brielle, Esther S; Arkin, Isaiah T.
Affiliation
  • Brielle ES; The Alexander Grass Center for Bioengineering, Benin School of Computer Science and Engineering, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem 9190400, Israel.
  • Arkin IT; The Alexander Silberman Institute of Life Sciences. Department of Biological Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Jerusalem 9190400, Israel.
J Phys Chem Lett ; 12(28): 6634-6638, 2021 Jul 22.
Article in En | MEDLINE | ID: mdl-34254809
Vibrational spectroscopy is a powerful tool used to analyze biological and chemical samples. However, in proteins, the most predominant peaks that arise from the backbone amide groups overlap one another, hampering site-specific analyses. Isotope editing has provided a robust, noninvasive approach to overcome this hurdle. In particular, the 1-13C═16O and 1-13C═18O labels that shift the amide I vibrational mode have enabled 1D- and 2D-IR spectroscopy to characterize proteins with excellent site-specific resolution. Herein, we expand the vibrational spectroscopy toolkit appreciably by introducing the 1-13C[Formula: see text]15N probe at specific locations along the protein backbone. A new, isotopically edited amide II peak is observed clearly in the spectra despite the presence of unlabeled modes arising from the rest of the protein. The experimentally determined shift of -30 cm-1 is reproduced by DFT calculations providing further credence to the mode assignment. Since the amide II mode arises from different elements than the amide I mode, it affords molecular insights that are both distinct and complementary. Moreover, multiple labeling schemes may be used simultaneously, enhancing vibrational spectroscopy's ability to provide detailed molecular insights.

Full text: 1 Database: MEDLINE Language: En Journal: J Phys Chem Lett Year: 2021 Type: Article Affiliation country: Israel

Full text: 1 Database: MEDLINE Language: En Journal: J Phys Chem Lett Year: 2021 Type: Article Affiliation country: Israel