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Precision environmental health monitoring by longitudinal exposome and multi-omics profiling.
Gao, Peng; Shen, Xiaotao; Zhang, Xinyue; Jiang, Chao; Zhang, Sai; Zhou, Xin; Schüssler-Fiorenza Rose, Sophia Miryam; Snyder, Michael.
Affiliation
  • Gao P; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Shen X; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Zhang X; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Jiang C; Life Sciences Institute, Zhejiang University, Hangzhou, Zhejiang 310058, China.
  • Zhang S; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Zhou X; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Schüssler-Fiorenza Rose SM; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
  • Snyder M; Department of Genetics, Stanford University School of Medicine, Stanford, California 94304, USA.
Genome Res ; 32(6): 1199-1214, 2022 06.
Article in En | MEDLINE | ID: mdl-35667843
ABSTRACT
Conventional environmental health studies have primarily focused on limited environmental stressors at the population level, which lacks the power to dissect the complexity and heterogeneity of individualized environmental exposures. Here, as a pilot case study, we integrated deep-profiled longitudinal personal exposome and internal multi-omics to systematically investigate how the exposome shapes a single individual's phenome. We annotated thousands of chemical and biological components in the personal exposome cloud and found they were significantly correlated with thousands of internal biomolecules, which was further cross-validated using corresponding clinical data. Our results showed that agrochemicals and fungi predominated in the highly diverse and dynamic personal exposome, and the biomolecules and pathways related to the individual's immune system, kidney, and liver were highly associated with the personal external exposome. Overall, this data-driven longitudinal monitoring study shows the potential dynamic interactions between the personal exposome and internal multi-omics, as well as the impact of the exposome on precision health by producing abundant testable hypotheses.
Subject(s)

Full text: 1 Database: MEDLINE Main subject: Exposome Type of study: Risk_factors_studies Limits: Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2022 Type: Article Affiliation country: United States

Full text: 1 Database: MEDLINE Main subject: Exposome Type of study: Risk_factors_studies Limits: Humans Language: En Journal: Genome Res Journal subject: BIOLOGIA MOLECULAR / GENETICA Year: 2022 Type: Article Affiliation country: United States