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Ultrafast structural changes direct the first molecular events of vision.
Gruhl, Thomas; Weinert, Tobias; Rodrigues, Matthew J; Milne, Christopher J; Ortolani, Giorgia; Nass, Karol; Nango, Eriko; Sen, Saumik; Johnson, Philip J M; Cirelli, Claudio; Furrer, Antonia; Mous, Sandra; Skopintsev, Petr; James, Daniel; Dworkowski, Florian; Båth, Petra; Kekilli, Demet; Ozerov, Dmitry; Tanaka, Rie; Glover, Hannah; Bacellar, Camila; Brünle, Steffen; Casadei, Cecilia M; Diethelm, Azeglio D; Gashi, Dardan; Gotthard, Guillaume; Guixà-González, Ramon; Joti, Yasumasa; Kabanova, Victoria; Knopp, Gregor; Lesca, Elena; Ma, Pikyee; Martiel, Isabelle; Mühle, Jonas; Owada, Shigeki; Pamula, Filip; Sarabi, Daniel; Tejero, Oliver; Tsai, Ching-Ju; Varma, Niranjan; Wach, Anna; Boutet, Sébastien; Tono, Kensuke; Nogly, Przemyslaw; Deupi, Xavier; Iwata, So; Neutze, Richard; Standfuss, Jörg; Schertler, Gebhard; Panneels, Valerie.
Affiliation
  • Gruhl T; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Weinert T; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Rodrigues MJ; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Milne CJ; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Ortolani G; European XFEL, Schenefeld, Germany.
  • Nass K; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
  • Nango E; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Sen S; Institute of Multidisciplinary Research for Advanced Materials, Tohoku University, Sendai, Japan.
  • Johnson PJM; RIKEN SPring-8 Center, Hyogo, Japan.
  • Cirelli C; Condensed Matter Theory Group, Laboratory for Theoretical and Computational Physics, Division of Scientific Computing, Theory and Data, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Furrer A; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
  • Mous S; Photon Science Division, Laboratory for Nonlinear Optics, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Skopintsev P; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • James D; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Dworkowski F; Biologics Center, Novartis Institutes for Biomedical Research, Basel, Switzerland.
  • Båth P; Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland.
  • Kekilli D; Linac Coherent Light Source, SLAC National Accelerator Laboratory, Menlo Park, CA, USA.
  • Ozerov D; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Tanaka R; California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA, USA.
  • Glover H; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Bacellar C; Department of Physics, Utah Valley University, Orem, UT, USA.
  • Brünle S; Photon Science Division, Laboratory for Macromolecules and Bioimaging, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Casadei CM; Department of Chemistry and Molecular Biology, University of Gothenburg, Gothenburg, Sweden.
  • Diethelm AD; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Gashi D; Division Scientific Computing, Theory and Data, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Gotthard G; RIKEN SPring-8 Center, Hyogo, Japan.
  • Guixà-González R; Department of Cell Biology, Graduate School of Medicine, Kyoto University, Kyoto, Japan.
  • Joti Y; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Kabanova V; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Knopp G; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Lesca E; Leiden Institute of Chemistry, Leiden University, Leiden, The Netherlands.
  • Ma P; Department of Biology, ETH Zurich, Zurich, Switzerland.
  • Martiel I; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Mühle J; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Owada S; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Pamula F; Institute of Molecular Biology and Biophysics, Department of Biology, ETH Zurich, Zurich, Switzerland.
  • Sarabi D; Condensed Matter Theory Group, Laboratory for Theoretical and Computational Physics, Division of Scientific Computing, Theory and Data, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Tejero O; Swiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
  • Tsai CJ; Japan Synchrotron Radiation Research Institute, Hyogo, Japan.
  • Varma N; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Wach A; Laboratory for Ultrafast X-ray Sciences, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
  • Boutet S; Photon Science Division, Laboratory for Femtochemistry, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Tono K; Department of Biology, ETH Zurich, Zurich, Switzerland.
  • Nogly P; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Deupi X; Photon Science Division, Laboratory for Macromolecules and Bioimaging, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Iwata S; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Neutze R; RIKEN SPring-8 Center, Hyogo, Japan.
  • Standfuss J; Japan Synchrotron Radiation Research Institute, Hyogo, Japan.
  • Schertler G; Division of Biology and Chemistry, Laboratory for Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland.
  • Panneels V; Department of Molecular Biology and Genetics, Aarhus University, Aarhus, Denmark.
Nature ; 615(7954): 939-944, 2023 03.
Article in En | MEDLINE | ID: mdl-36949205
ABSTRACT
Vision is initiated by the rhodopsin family of light-sensitive G protein-coupled receptors (GPCRs)1. A photon is absorbed by the 11-cis retinal chromophore of rhodopsin, which isomerizes within 200 femtoseconds to the all-trans conformation2, thereby initiating the cellular signal transduction processes that ultimately lead to vision. However, the intramolecular mechanism by which the photoactivated retinal induces the activation events inside rhodopsin remains experimentally unclear. Here we use ultrafast time-resolved crystallography at room temperature3 to determine how an isomerized twisted all-trans retinal stores the photon energy that is required to initiate the protein conformational changes associated with the formation of the G protein-binding signalling state. The distorted retinal at a 1-ps time delay after photoactivation has pulled away from half of its numerous interactions with its binding pocket, and the excess of the photon energy is released through an anisotropic protein breathing motion in the direction of the extracellular space. Notably, the very early structural motions in the protein side chains of rhodopsin appear in regions that are involved in later stages of the conserved class A GPCR activation mechanism. Our study sheds light on the earliest stages of vision in vertebrates and points to fundamental aspects of the molecular mechanisms of agonist-mediated GPCR activation.
Subject(s)

Full text: 1 Database: MEDLINE Main subject: Rhodopsin / Vision, Ocular Limits: Animals Language: En Journal: Nature Year: 2023 Type: Article Affiliation country: Switzerland

Full text: 1 Database: MEDLINE Main subject: Rhodopsin / Vision, Ocular Limits: Animals Language: En Journal: Nature Year: 2023 Type: Article Affiliation country: Switzerland