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The draft genome of Spiraea crenata L. (Rosaceae) - the first complete genome in tribe Spiraeeae.
Laczkó, Levente; Jordán, Sándor; Póliska, Szilárd; Rácz, Hanna Viktória; Nagy, Nikoletta Andrea; Molnár V, Attila; Sramkó, Gábor.
Affiliation
  • Laczkó L; Department of Metagenomics, University of Debrecen, Debrecen, Hungary.
  • Jordán S; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary.
  • Póliska S; Department of Metagenomics, University of Debrecen, Debrecen, Hungary.
  • Rácz HV; HUN-REN-UD Conservation Biology Research Group, University of Debrecen, Debrecen, Hungary.
  • Nagy NA; Juhász-Nagy Pál Doctoral School, University of Debrecen, Debrecen, Hungary.
  • Molnár V A; Department of Biochemistry and Molecular Biology, Faculty of Medicine, University of Debrecen, Debrecen, Hungary.
  • Sramkó G; Department of Biotechnology and Microbiology, Faculty of Science and Technology, University of Debrecen, Debrecen, Hungary.
Sci Data ; 11(1): 219, 2024 Feb 17.
Article in En | MEDLINE | ID: mdl-38368431
ABSTRACT
Spiraea crenata L. is a deciduous shrub distributed across the Eurasian steppe zone. The species is of cultural and horticultural importance and occurs in scattered populations throughout its westernmost range. Currently, there is no genomic information on the tribe of Spiraeeae. Therefore we sequenced and assembled the whole genome of S. crenata using second- and third-generation sequencing and a hybrid assembly approach to expand genomic resources for conservation and support research on this horticulturally important lineage. In addition to the organellar genomes (the plastome and the mitochondrion), we present the first draft genome of the species with an estimated size of 220 Mbp, an N50 value of 7.7 Mbp, and a BUSCO score of 96.0%. Being the first complete genome in tribe Spiraeeae, this may not only be the first step in the genomic study of a rare plant but also a contribution to genomic resources supporting the study of biodiversity and evolutionary history of Rosaceae.
Subject(s)

Full text: 1 Database: MEDLINE Main subject: Genome, Plant / Spiraea Language: En Journal: Sci Data Year: 2024 Type: Article Affiliation country: Hungary

Full text: 1 Database: MEDLINE Main subject: Genome, Plant / Spiraea Language: En Journal: Sci Data Year: 2024 Type: Article Affiliation country: Hungary