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Aquibaculum arenosum gen. nov., sp. nov., a novel member of the family Rhodovibrionaceae, isolated from sea sand.
Ahn, Soyeon; Choi, David Hyung-Sun; Weerawongwiwat, Veeraya; Kim, Jong-Hwa; Sukhoom, Ampaitip; Kim, Wonyong.
Affiliation
  • Ahn S; Department of Microbiology, Chung-Ang University College of Medicine, Seoul 06974, Republic of Korea.
  • Choi DH; Faculty of Arts and Science, University of Toronto, Toronto, Ontario M5S 1A1, Canada.
  • Weerawongwiwat V; Department of Microbiology, Chung-Ang University College of Medicine, Seoul 06974, Republic of Korea.
  • Kim JH; Department of Microbiology, Chung-Ang University College of Medicine, Seoul 06974, Republic of Korea.
  • Sukhoom A; Division of Biological Science, Faculty of Science, Prince of Songkla University, Songkhla 90112, Thailand.
  • Kim W; Department of Microbiology, Chung-Ang University College of Medicine, Seoul 06974, Republic of Korea.
Article in En | MEDLINE | ID: mdl-38995165
ABSTRACT
A Gram-negative, non-motile, and creamy-white coloured bacterium, designated CAU 1616T, was isolated from sea sand collected at Ayajin Beach, Goseong-gun, Republic of Korea. The bacterium was found to grow optimally at 37 °C, pH 8.0-8.5, and with 1-5 % (w/v) NaCl. Phylogenetic analyses based on the 16S rRNA gene sequences placed strain CAU 1616T within the order Rhodospirillales. The highest 16S rRNA gene sequence similarity was to Fodinicurvata fenggangensis YIM D812T (94.1 %), Fodinicurvata sediminis YIM D82T (93.7 %), Fodinicurvata halophila BA45ALT (93.6 %) and Algihabitans albus HHTR 118T (92.3 %). Comparing strain CAU 1616T with closely related species (Fodinicurvata fenggangensis YIM D812T and Fodinicurvata sediminis YIM D82T), the average nucleotide identity based on blast+ values were 69.7-69.8 %, the average amino acid identity values were 61.3-61.4 %, and the digital DNA-DNA hybridization values were 18.4-18.5 %. The assembled draft genome of strain CAU 1616T had 29 contigs with an N50 value of 385.8 kbp, a total length of 3 490 371 bp, and a DNA G+C content of 65.1 mol%. The predominant cellular fatty acids were C18  1 2-OH, C19  0 cyclo ω8c, and summed feature 8 (C18  1 ω6c and/or C18  1 ω7c). The major respiratory quinone was Q-10. Based on phenotypic, phylogenetic, and chemotaxonomic evidence, strain CAU 1616T represents a novel genus in the family Rhodovibrionaceae, for which the name Aquibaculum arenosum gen. nov., sp. nov. is proposed. The type strain is CAU 1616T (=KCTC 82428T=MCCC 1K06089T).
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Full text: 1 Database: MEDLINE Main subject: Phylogeny / Base Composition / DNA, Bacterial / RNA, Ribosomal, 16S / Bacterial Typing Techniques / Sequence Analysis, DNA / Fatty Acids / Sand / Nucleic Acid Hybridization Country/Region as subject: Asia Language: En Journal: Int J Syst Evol Microbiol Journal subject: MICROBIOLOGIA Year: 2024 Type: Article

Full text: 1 Database: MEDLINE Main subject: Phylogeny / Base Composition / DNA, Bacterial / RNA, Ribosomal, 16S / Bacterial Typing Techniques / Sequence Analysis, DNA / Fatty Acids / Sand / Nucleic Acid Hybridization Country/Region as subject: Asia Language: En Journal: Int J Syst Evol Microbiol Journal subject: MICROBIOLOGIA Year: 2024 Type: Article