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A surrogate ℓ0 sparse Cox's regression with applications to sparse high-dimensional massive sample size time-to-event data.
Kawaguchi, Eric S; Suchard, Marc A; Liu, Zhenqiu; Li, Gang.
Afiliación
  • Kawaguchi ES; Department of Preventive Medicine, University of Southern California, Los Angeles, California.
  • Suchard MA; Department of Preventive Medicine, University of Southern California, Los Angeles, California.
  • Liu Z; Department of Biomathematics, University of California, Los Angeles, California.
  • Li G; Department of Human Genetics, University of California, Los Angeles, California.
Stat Med ; 39(6): 675-686, 2020 03 15.
Article en En | MEDLINE | ID: mdl-31814146
Sparse high-dimensional massive sample size (sHDMSS) time-to-event data present multiple challenges to quantitative researchers as most current sparse survival regression methods and software will grind to a halt and become practically inoperable. This paper develops a scalable ℓ0 -based sparse Cox regression tool for right-censored time-to-event data that easily takes advantage of existing high performance implementation of ℓ2 -penalized regression method for sHDMSS time-to-event data. Specifically, we extend the ℓ0 -based broken adaptive ridge (BAR) methodology to the Cox model, which involves repeatedly performing reweighted ℓ2 -penalized regression. We rigorously show that the resulting estimator for the Cox model is selection consistent, oracle for parameter estimation, and has a grouping property for highly correlated covariates. Furthermore, we implement our BAR method in an R package for sHDMSS time-to-event data by leveraging existing efficient algorithms for massive ℓ2 -penalized Cox regression. We evaluate the BAR Cox regression method by extensive simulations and illustrate its application on an sHDMSS time-to-event data from the National Trauma Data Bank with hundreds of thousands of observations and tens of thousands sparsely represented covariates.
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Algoritmos Tipo de estudio: Diagnostic_studies Límite: Humans Idioma: En Revista: Stat Med Año: 2020 Tipo del documento: Article

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Algoritmos Tipo de estudio: Diagnostic_studies Límite: Humans Idioma: En Revista: Stat Med Año: 2020 Tipo del documento: Article