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A framework for the development of a global standardised marine taxon reference image database (SMarTaR-ID) to support image-based analyses.
Howell, Kerry L; Davies, Jaime S; Allcock, A Louise; Braga-Henriques, Andreia; Buhl-Mortensen, Pål; Carreiro-Silva, Marina; Dominguez-Carrió, Carlos; Durden, Jennifer M; Foster, Nicola L; Game, Chloe A; Hitchin, Becky; Horton, Tammy; Hosking, Brett; Jones, Daniel O B; Mah, Christopher; Laguionie Marchais, Claire; Menot, Lenaick; Morato, Telmo; Pearman, Tabitha R R; Piechaud, Nils; Ross, Rebecca E; Ruhl, Henry A; Saeedi, Hanieh; Stefanoudis, Paris V; Taranto, Gerald H; Thompson, Michael B; Taylor, James R; Tyler, Paul; Vad, Johanne; Victorero, Lissette; Vieira, Rui P; Woodall, Lucy C; Xavier, Joana R; Wagner, Daniel.
Afiliación
  • Howell KL; School of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
  • Davies JS; School of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
  • Allcock AL; Zoology, School of Natural Sciences, and Ryan Institute, National University of Ireland, Galway, Galway, Ireland.
  • Braga-Henriques A; MARE-Marine and Environmental Sciences Centre, Estação de Biologia Marinha do Funchal, Cais do Carvão, Funchal, Madeira Island, Portugal.
  • Buhl-Mortensen P; ARDITI-Regional Agency for the Development of Research, Technology and Innovation, Oceanic Observatory of Madeira (OOM), Madeira Tecnopolo, Caminho da Penteada, Funchal, Portugal.
  • Carreiro-Silva M; Institute of Marine Research,Nordnes, Bergen, Norway.
  • Dominguez-Carrió C; Okeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
  • Durden JM; IMAR Instituto do Mar, Marine and Environmental Sciences Centre (MARE), Universidade dos Açores, Horta, Portugal.
  • Foster NL; Okeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
  • Game CA; IMAR Instituto do Mar, Marine and Environmental Sciences Centre (MARE), Universidade dos Açores, Horta, Portugal.
  • Hitchin B; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Horton T; School of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
  • Hosking B; School of Computing Sciences, University of East Anglia, Norwich, United Kingdom.
  • Jones DOB; JNCC, Inverdee House, Aberdeen, United Kingdom.
  • Mah C; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Laguionie Marchais C; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Menot L; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Morato T; Dept. of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington D.C., United States of America.
  • Pearman TRR; Zoology, School of Natural Sciences, and Ryan Institute, National University of Ireland, Galway, Galway, Ireland.
  • Piechaud N; Ifremer, Centre de Bretagne, Plouzané, France.
  • Ross RE; Okeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
  • Ruhl HA; IMAR Instituto do Mar, Marine and Environmental Sciences Centre (MARE), Universidade dos Açores, Horta, Portugal.
  • Saeedi H; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Stefanoudis PV; School of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
  • Taranto GH; School of Biological and Marine Science, Plymouth University, Drake Circus, Plymouth, United Kingdom.
  • Thompson MB; Institute of Marine Research,Nordnes, Bergen, Norway.
  • Taylor JR; National Oceanography Centre, University of Southampton Waterfront Campus, European Way, Southampton, United Kingdom.
  • Tyler P; Monterey Bay Aquarium Research Institute, Moss Landing, CA, United States of America.
  • Vad J; Senckenberg Research Institute and Natural History Museum; Department of Marine Zoology, Frankfurt am Main, Germany.
  • Victorero L; Goethe University Frankfurt, Institute for Ecology, Diversity and Evolution, Frankfurt am Main, Germany.
  • Vieira RP; OBIS Data Manager, Deep-Sea Node.
  • Woodall LC; Nekton Foundation, Begbroke Science Park, Begbroke Hill, Begbroke, Oxfordshire, United Kingdom.
  • Xavier JR; Department of Zoology, University of Oxford, Zoology Research and Administration Building, Oxford, United Kingdom.
  • Wagner D; Okeanos Research Centre, Universidade dos Açores, Departamento de Oceanografia e Pesca, Horta, Portugal.
PLoS One ; 14(12): e0218904, 2019.
Article en En | MEDLINE | ID: mdl-31891586
Video and image data are regularly used in the field of benthic ecology to document biodiversity. However, their use is subject to a number of challenges, principally the identification of taxa within the images without associated physical specimens. The challenge of applying traditional taxonomic keys to the identification of fauna from images has led to the development of personal, group, or institution level reference image catalogues of operational taxonomic units (OTUs) or morphospecies. Lack of standardisation among these reference catalogues has led to problems with observer bias and the inability to combine datasets across studies. In addition, lack of a common reference standard is stifling efforts in the application of artificial intelligence to taxon identification. Using the North Atlantic deep sea as a case study, we propose a database structure to facilitate standardisation of morphospecies image catalogues between research groups and support future use in multiple front-end applications. We also propose a framework for coordination of international efforts to develop reference guides for the identification of marine species from images. The proposed structure maps to the Darwin Core standard to allow integration with existing databases. We suggest a management framework where high-level taxonomic groups are curated by a regional team, consisting of both end users and taxonomic experts. We identify a mechanism by which overall quality of data within a common reference guide could be raised over the next decade. Finally, we discuss the role of a common reference standard in advancing marine ecology and supporting sustainable use of this ecosystem.
Asunto(s)

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Procesamiento de Imagen Asistido por Computador / Clasificación / Biología Marina Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: PLoS One Asunto de la revista: CIENCIA / MEDICINA Año: 2019 Tipo del documento: Article País de afiliación: Reino Unido

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Procesamiento de Imagen Asistido por Computador / Clasificación / Biología Marina Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: PLoS One Asunto de la revista: CIENCIA / MEDICINA Año: 2019 Tipo del documento: Article País de afiliación: Reino Unido