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The evolutionary origin and domestication history of goldfish (Carassius auratus).
Chen, Duo; Zhang, Qing; Tang, Weiqi; Huang, Zhen; Wang, Gang; Wang, Yongjun; Shi, Jiaxian; Xu, Huimin; Lin, Lianyu; Li, Zhen; Chi, Wenchao; Huang, Likun; Xia, Jing; Zhang, Xingtan; Guo, Lin; Wang, Yuanyuan; Ma, Panpan; Tang, Juan; Zhou, Gang; Liu, Min; Liu, Fuyan; Hua, Xiuting; Wang, Baiyu; Shen, Qiaochu; Jiang, Qing; Lin, Jingxian; Chen, Xuequn; Wang, Hongbo; Dou, Meijie; Liu, Lei; Pan, Haoran; Qi, Yiying; Wu, Bin; Fang, Jingping; Zhou, Yitao; Cen, Wan; He, Wenjin; Zhang, Qiujin; Xue, Ting; Lin, Gang; Zhang, Wenchun; Liu, Zhongjian; Qu, Liming; Wang, Aiming; Ye, Qichang; Chen, Jianming; Zhang, Yanding; Ming, Ray; Van Montagu, Marc; Tang, Haibao.
Afiliación
  • Chen D; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Zhang Q; Fujian Key Laboratory of Developmental and Neural Biology, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Tang W; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Huang Z; Institute of Oceanography, Marine Biotechnology Center, Minjiang University, 350108 Fuzhou, China.
  • Wang G; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China; zhuang@fjnu.edu.cn marc.vanmontagu@ugent.be tanghaibao@gmail.com yves.vandepeer@ps
  • Wang Y; Fujian Key Laboratory of Developmental and Neural Biology, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Shi J; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Xu H; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Lin L; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Li Z; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Chi W; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Huang L; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Xia J; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Zhang X; Institute of Oceanography, Marine Biotechnology Center, Minjiang University, 350108 Fuzhou, China.
  • Guo L; Fujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, 350002 Fujian, China.
  • Wang Y; Fujian Key Laboratory of Crop Breeding by Design, Fujian Agriculture and Forestry University, Fuzhou, 350002 Fujian, China.
  • Ma P; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Tang J; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Zhou G; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Liu M; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Liu F; Technical Department, Biomarker Technologies Corporation, 101300 Beijing, China.
  • Hua X; Technical Department, Biomarker Technologies Corporation, 101300 Beijing, China.
  • Wang B; Technical Department, Biomarker Technologies Corporation, 101300 Beijing, China.
  • Shen Q; Technical Department, Biomarker Technologies Corporation, 101300 Beijing, China.
  • Jiang Q; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Lin J; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Chen X; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Wang H; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Dou M; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Liu L; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Pan H; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Qi Y; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Wu B; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Fang J; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Zhou Y; Center for Genomics and Biotechnology, Haixia Institute of Science and Technology, Fujian Provincial Laboratory of Haixia Applied Plant Systems Biology, College of Life Sciences, Fujian Agriculture and Forestry University, 350002 Fuzhou, China.
  • Cen W; Laboratory Department, Fujian Fisheries Technology Extension Center, 350002 Fuzhou, China.
  • He W; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Zhang Q; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Xue T; Fujian Key Laboratory of Developmental and Neural Biology, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Lin G; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Zhang W; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Liu Z; Center of Engineering Technology Research for Microalgae Germplasm Improvement of Fujian, Southern Institute of Oceanography, Fujian Normal University, 350117 Fuzhou, China.
  • Qu L; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Wang A; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Ye Q; Center of Engineering Technology Research for Microalgae Germplasm Improvement of Fujian, Southern Institute of Oceanography, Fujian Normal University, 350117 Fuzhou, China.
  • Chen J; Fujian Key Laboratory of Special Marine Bio-Resources Sustainable Utilization, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Zhang Y; Public Service Platform for Industrialization Development Technology of Marine Biological Medicine and Product of State Oceanic Administration, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Ming R; Fujian Key Laboratory of Special Marine Bio-Resources Sustainable Utilization, College of Life Sciences, Fujian Normal University, 350117 Fuzhou, China.
  • Van Montagu M; Department of Technical Science, Minhou County Nantong Chunyuanli Ecological Farm, 350001 Fuzhou, China.
  • Tang H; Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, 350001 Fuzhou, China.
Proc Natl Acad Sci U S A ; 117(47): 29775-29785, 2020 11 24.
Article en En | MEDLINE | ID: mdl-33139555
ABSTRACT
Goldfish have been subjected to over 1,000 y of intensive domestication and selective breeding. In this report, we describe a high-quality goldfish genome (2n = 100), anchoring 95.75% of contigs into 50 pseudochromosomes. Comparative genomics enabled us to disentangle the two subgenomes that resulted from an ancient hybridization event. Resequencing 185 representative goldfish variants and 16 wild crucian carp revealed the origin of goldfish and identified genomic regions that have been shaped by selective sweeps linked to its domestication. Our comprehensive collection of goldfish varieties enabled us to associate genetic variations with a number of well-known anatomical features, including features that distinguish traditional goldfish clades. Additionally, we identified a tyrosine-protein kinase receptor as a candidate causal gene for the first well-known case of Mendelian inheritance in goldfish-the transparent mutant. The goldfish genome and diversity data offer unique resources to make goldfish a promising model for functional genomics, as well as domestication.
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Carpa Dorada / Evolución Molecular / Selección Artificial / Domesticación Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2020 Tipo del documento: Article País de afiliación: China
Texto completo
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Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Carpa Dorada / Evolución Molecular / Selección Artificial / Domesticación Tipo de estudio: Prognostic_studies Límite: Animals Idioma: En Revista: Proc Natl Acad Sci U S A Año: 2020 Tipo del documento: Article País de afiliación: China