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Biogenic Solution Map Based on the Definition of the Metabolic Correlation Distance between 4-Dimensional Fingerprints.
Wang, Ren-Qi; Geng, Ye; Song, Juan-Na; Yu, Huai-Dong; Bao, Kai; Wang, Yu-Ru; Croué, Jean-Philippe; Miyatake, Hideyuki; Ito, Yoshihiro; Liu, Yan-Ru; Chen, Yong-Mei.
Afiliación
  • Wang RQ; School of Food and Biological Engineering, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an 710021, People's Republic of China.
  • Geng Y; School of Food and Biological Engineering, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an 710021, People's Republic of China.
  • Song JN; School of Food and Biological Engineering, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an 710021, People's Republic of China.
  • Yu HD; Gezhu Bio Co., Ltd, Beijing 100037, People's Republic of China.
  • Bao K; SINTEF Digital, Oslo N-0314, Norway.
  • Wang YR; Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an 710119, People's Republic of China.
  • Croué JP; Institut de Chimie des Milieux et des Matériaux IC2MP UMR 7285 CNRS, Université de Poitiers, Poitiers 86000, France.
  • Miyatake H; Nano Medical Engineering Laboratory, RIKEN Cluster for Pioneering Research, Emergent Bioengineering Materials Research Team, RIKEN Center for Emergent Matter Science, 2-1 Hirosawa, Wako, Saitama 3510198, Japan.
  • Ito Y; Nano Medical Engineering Laboratory, RIKEN Cluster for Pioneering Research, Emergent Bioengineering Materials Research Team, RIKEN Center for Emergent Matter Science, 2-1 Hirosawa, Wako, Saitama 3510198, Japan.
  • Liu YR; Shaanxi Collaborative Innovation Center Medicinal Resource Industrialization, Shaanxi University of Chinese Medicine, Xianyang 712083, People's Republic of China.
  • Chen YM; School of Food and Biological Engineering, College of Bioresources Chemical and Materials Engineering, Shaanxi University of Science & Technology, Xi'an 710021, People's Republic of China.
Anal Chem ; 95(19): 7503-7511, 2023 05 16.
Article en En | MEDLINE | ID: mdl-37130068
Accurate discrimination and classification of unknown species are the basis to predict its characteristics or applications to make correct decisions. However, for biogenic solutions that are ubiquitous in nature and our daily lives, direct determination of their similarities and disparities by their molecular compositions remains a scientific challenge. Here, we explore a standard and visualizable ontology, termed "biogenic solution map", that organizes multifarious classes of biogenic solutions into a map of hierarchical structures. To build the map, a novel 4-dimensional (4D) fingerprinting method based on data-independent acquisition data sets of untargeted metabolomics is developed, enabling accurate characterization of complex biogenic solutions. A generic parameter of metabolic correlation distance, calculated based on averaged similarities between 4D fingerprints of sample groups, is able to define "species", "genus", and "family" of each solution in the map. With the help of the "biogenic solution map", species of unknown biogenic solutions can be explicitly defined. Simultaneously, intrinsic correlations and subtle variations among biogenic solutions in the map are accurately illustrated. Moreover, it is worth mentioning that samples of the same analyte but prepared by alternative protocols may have significantly different metabolic compositions and could be classified into different "genera".
Asunto(s)

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Metabolómica Tipo de estudio: Prognostic_studies Idioma: En Revista: Anal Chem Año: 2023 Tipo del documento: Article

Texto completo: 1 Bases de datos: MEDLINE Asunto principal: Metabolómica Tipo de estudio: Prognostic_studies Idioma: En Revista: Anal Chem Año: 2023 Tipo del documento: Article