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The ubiquity of clonal interference in cancer and other range expansions.
Stein, Alexander; Kizhuttil, Ramanarayanan; Bak, Maciej; Noble, Robert.
Afiliación
  • Stein A; Centre for Cancer Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, UK and Department of Physics, ETH Zurich, Zürich, Switzerland.
  • Kizhuttil R; Department of Physics, Indian Institute of Science Education and Research, Kolkata, India.
  • Bak M; Department of Mathematics, City, University of London, London, UK.
  • Noble R; Department of Mathematics, City, University of London, London, UK.
bioRxiv ; 2024 Mar 09.
Article en En | MEDLINE | ID: mdl-38077009
ABSTRACT
Evolution during range expansions shapes the fate of many biological systems including tumours, microbial communities, and invasive species. A fundamental process of interest is the selective sweep, in which an advantageous mutation evades clonal interference and spreads through the population to fixation. However, most theoretical investigations of selective sweeps have assumed constant population size or have ignored spatial structure. Here we use mathematical modelling and analysis to investigate selective sweep probabilities in populations that spread outwards as they evolve. In the case of constant radial expansion speed, we derive probability distributions for the arrival time and location of the first surviving mutant and hence find surprisingly simple approximate and exact expressions for selective sweep probabilities in one, two and three dimensions, which are independent of mutation rate. Namely, the selective sweep probability is approximately 1-cwt/cmd, where cwt and cm are the wildtype and mutant radial expansion speeds, and d the spatial dimension. Using agent-based simulations, we show that our analytical results accurately predict selective sweep frequencies in the two-dimensional spatial Moran process. We further compare our results with those obtained for alternative growth models. Parameterizing our model for human tumours, we find that selective sweeps are predicted to be rare except during very early solid tumour growth, thus providing a general, pan-cancer explanation for findings from recent sequencing studies.

Texto completo: 1 Bases de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Suiza

Texto completo: 1 Bases de datos: MEDLINE Idioma: En Revista: BioRxiv Año: 2024 Tipo del documento: Article País de afiliación: Suiza