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Visualizing metagenomic and metatranscriptomic data: A comprehensive review.
Aplakidou, Eleni; Vergoulidis, Nikolaos; Chasapi, Maria; Venetsianou, Nefeli K; Kokoli, Maria; Panagiotopoulou, Eleni; Iliopoulos, Ioannis; Karatzas, Evangelos; Pafilis, Evangelos; Georgakopoulos-Soares, Ilias; Kyrpides, Nikos C; Pavlopoulos, Georgios A; Baltoumas, Fotis A.
Afiliación
  • Aplakidou E; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Vergoulidis N; Department of Informatics and Telecommunications, Data Science and Information Technologies program, University of Athens, 15784 Athens, Greece.
  • Chasapi M; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Venetsianou NK; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Kokoli M; Department of Informatics and Telecommunications, Data Science and Information Technologies program, University of Athens, 15784 Athens, Greece.
  • Panagiotopoulou E; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Iliopoulos I; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Karatzas E; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Pafilis E; Department of Informatics and Telecommunications, Data Science and Information Technologies program, University of Athens, 15784 Athens, Greece.
  • Georgakopoulos-Soares I; Department of Basic Sciences, School of Medicine, University of Crete, 71003 Heraklion, Greece.
  • Kyrpides NC; Institute for Fundamental Biomedical Research, BSRC "Alexander Fleming", Vari, Greece.
  • Pavlopoulos GA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridge, UK.
  • Baltoumas FA; Institute of Marine Biology, Biotechnology and Aquaculture (IMBBC), Hellenic Centre for Marine Research (HCMR), Heraklion, Greece.
Comput Struct Biotechnol J ; 23: 2011-2033, 2024 Dec.
Article en En | MEDLINE | ID: mdl-38765606
ABSTRACT
The fields of Metagenomics and Metatranscriptomics involve the examination of complete nucleotide sequences, gene identification, and analysis of potential biological functions within diverse organisms or environmental samples. Despite the vast opportunities for discovery in metagenomics, the sheer volume and complexity of sequence data often present challenges in processing analysis and visualization. This article highlights the critical role of advanced visualization tools in enabling effective exploration, querying, and analysis of these complex datasets. Emphasizing the importance of accessibility, the article categorizes various visualizers based on their intended applications and highlights their utility in empowering bioinformaticians and non-bioinformaticians to interpret and derive insights from meta-omics data effectively.
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Texto completo: 1 Bases de datos: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Año: 2024 Tipo del documento: Article País de afiliación: Grecia

Texto completo: 1 Bases de datos: MEDLINE Idioma: En Revista: Comput Struct Biotechnol J Año: 2024 Tipo del documento: Article País de afiliación: Grecia