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Hackathons as a means of accelerating scientific discoveries and knowledge transfer.
Ghouila, Amel; Siwo, Geoffrey Henry; Entfellner, Jean-Baka Domelevo; Panji, Sumir; Button-Simons, Katrina A; Davis, Sage Zenon; Fadlelmola, Faisal M; Ferdig, Michael T; Mulder, Nicola.
Afiliação
  • Ghouila A; Institut Pasteur de Tunis, LR11IPT02, Laboratory of Transmission, Control and Immunobiology of Infections (LTCII), 1002 Tunis-Belvédère, Tunisia.
  • Siwo GH; IBM Research Africa, 2001, Johannesburg, South Africa.
  • Entfellner JD; Center for Research Computing, University of Notre Dame, Notre Dame, Indiana 46556, USA.
  • Panji S; South African National Bioinformatics Institute/Medical Research Council of South Africa Bioinformatics Unit, University of the Western Cape, Bellville 7535, Cape Town, South Africa.
  • Button-Simons KA; Computer Science Department, University of the Western Cape, Bellville 7535, Cape Town, South Africa.
  • Davis SZ; Computational Biology Division, Department of Integrative Biomedical Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, 7925, Cape Town, South Africa.
  • Fadlelmola FM; Eck Institute for Global Health, University of Notre Dame, Notre Dame, Indiana 46556, USA.
  • Ferdig MT; Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, Khartoum 321, and Future University of Sudan, Khartoum, 10553, Sudan.
Genome Res ; 28(5): 759-765, 2018 05.
Article em En | MEDLINE | ID: mdl-29650552
Scientific research plays a key role in the advancement of human knowledge and pursuit of solutions to important societal challenges. Typically, research occurs within specific institutions where data are generated and subsequently analyzed. Although collaborative science bringing together multiple institutions is now common, in such collaborations the analytical processing of the data is often performed by individual researchers within the team, with only limited internal oversight and critical analysis of the workflow prior to publication. Here, we show how hackathons can be a means of enhancing collaborative science by enabling peer review before results of analyses are published by cross-validating the design of studies or underlying data sets and by driving reproducibility of scientific analyses. Traditionally, in data analysis processes, data generators and bioinformaticians are divided and do not collaborate on analyzing the data. Hackathons are a good strategy to build bridges over the traditional divide and are potentially a great agile extension to the more structured collaborations between multiple investigators and institutions.
Assuntos

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Sistemas de Informação / Transferência de Tecnologia / Comunicação Interdisciplinar / Pesquisa Biomédica Limite: Humans País/Região como assunto: Africa Idioma: En Revista: Genome Res Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Tunísia

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Sistemas de Informação / Transferência de Tecnologia / Comunicação Interdisciplinar / Pesquisa Biomédica Limite: Humans País/Região como assunto: Africa Idioma: En Revista: Genome Res Assunto da revista: BIOLOGIA MOLECULAR / GENETICA Ano de publicação: 2018 Tipo de documento: Article País de afiliação: Tunísia