Identification of Regulatory SNPs Associated with Vicine and Convicine Content of <i>Vicia faba</i> Based on Genotyping by Sequencing Data Using Deep Learning.

Heinrich, Felix; Wutke, Martin; Das, Pronaya Prosun; Kamp, Miriam; Gültas, Mehmet; Link, Wolfgang; Schmitt, Armin Otto

Identification of Regulatory SNPs Associated with Vicine and Convicine Content of Vicia faba Based on Genotyping by Sequencing Data Using Deep Learning.

Heinrich, Felix; Wutke, Martin; Das, Pronaya Prosun; Kamp, Miriam; Gültas, Mehmet; Link, Wolfgang; Schmitt, Armin Otto.

Afiliação

Heinrich F; Breeding Informatics Group, Department of Animal Sciences, Georg-August University, Margarethe von Wrangell-Weg 7, 37075 Göttingen, Germany.
Wutke M; Breeding Informatics Group, Department of Animal Sciences, Georg-August University, Margarethe von Wrangell-Weg 7, 37075 Göttingen, Germany.
Das PP; Breeding Informatics Group, Department of Animal Sciences, Georg-August University, Margarethe von Wrangell-Weg 7, 37075 Göttingen, Germany.
Kamp M; Breeding Informatics Group, Department of Animal Sciences, Georg-August University, Margarethe von Wrangell-Weg 7, 37075 Göttingen, Germany.
Gültas M; Breeding Informatics Group, Department of Animal Sciences, Georg-August University, Margarethe von Wrangell-Weg 7, 37075 Göttingen, Germany.
Link W; Center for Integrated Breeding Research (CiBreed), Albrecht-Thaer-Weg 3, Georg-August University, 37075 Göttingen, Germany.
Schmitt AO; Department of Crop Sciences, Georg-August University, Von-Siebold-Str. 8, 37075 Göttingen, Germany.

Genes (Basel) ; 11(6)2020 06 05.

Article em En | MEDLINE | ID: mdl-32516876

Assuntos

Glucosídeos/genética; Sequências Reguladoras de Ácido Nucleico/genética; Uridina/análogos & derivados; Vicia faba/genética; Aprendizado Profundo; Genótipo; Polimorfismo de Nucleotídeo Único/genética; Pirimidinonas; Sementes/genética; Sintenia/genética; Fatores de Transcrição/genética; Uridina/genética

Palavras-chave

GBS; Vicia faba; convolutional neural network; promoter; rSNP; vicin/convicin

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Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Uridina / Sequências Reguladoras de Ácido Nucleico / Vicia faba / Glucosídeos Tipo de estudo: Diagnostic_studies / Prognostic_studies / Risk_factors_studies Idioma: En Revista: Genes (Basel) Ano de publicação: 2020 Tipo de documento: Article País de afiliação: Alemanha

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