Your browser doesn't support javascript.
loading
On the generalizability of diffusion MRI signal representations across acquisition parameters, sequences and tissue types: Chronicles of the MEMENTO challenge.
De Luca, Alberto; Ianus, Andrada; Leemans, Alexander; Palombo, Marco; Shemesh, Noam; Zhang, Hui; Alexander, Daniel C; Nilsson, Markus; Froeling, Martijn; Biessels, Geert-Jan; Zucchelli, Mauro; Frigo, Matteo; Albay, Enes; Sedlar, Sara; Alimi, Abib; Deslauriers-Gauthier, Samuel; Deriche, Rachid; Fick, Rutger; Afzali, Maryam; Pieciak, Tomasz; Bogusz, Fabian; Aja-Fernández, Santiago; Özarslan, Evren; Jones, Derek K; Chen, Haoze; Jin, Mingwu; Zhang, Zhijie; Wang, Fengxiang; Nath, Vishwesh; Parvathaneni, Prasanna; Morez, Jan; Sijbers, Jan; Jeurissen, Ben; Fadnavis, Shreyas; Endres, Stefan; Rokem, Ariel; Garyfallidis, Eleftherios; Sanchez, Irina; Prchkovska, Vesna; Rodrigues, Paulo; Landman, Bennet A; Schilling, Kurt G.
Afiliação
  • De Luca A; PROVIDI Lab, Image Sciences Institute, University Medical Center Utrecht, Utrecht, the Netherlands; Department of Neurology, UMC Utrecht Brain Center, University Medical Center Utrecht, Utrecht, the Netherlands. Electronic address: a.deluca-2@umcutrecht.nl.
  • Ianus A; Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Leemans A; PROVIDI Lab, Image Sciences Institute, University Medical Center Utrecht, Utrecht, the Netherlands.
  • Palombo M; Centre for Medical Image Computing, Department of Computer Science, University College London, London, United Kingdom.
  • Shemesh N; Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.
  • Zhang H; Centre for Medical Image Computing, Department of Computer Science, University College London, London, United Kingdom.
  • Alexander DC; Centre for Medical Image Computing, Department of Computer Science, University College London, London, United Kingdom.
  • Nilsson M; Clinical Sciences Lund, Radiology, Lund University, Lund, Sweden.
  • Froeling M; Department of Radiology, University Medical Center Utrecht, Utrecht, the Netherlands.
  • Biessels GJ; Department of Neurology, UMC Utrecht Brain Center, University Medical Center Utrecht, Utrecht, the Netherlands.
  • Zucchelli M; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Frigo M; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Albay E; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France; Istanbul Technical University, Istanbul, Turkey.
  • Sedlar S; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Alimi A; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Deslauriers-Gauthier S; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Deriche R; Inria Sophia Antipolis - Méditerranée, Université Côte d'Azur, Sophia Antipolis, France.
  • Fick R; TRIBVN Healthcare, Paris, France.
  • Afzali M; Cardiff University Brain Research, Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Cardiff, United Kingdom.
  • Pieciak T; AGH University of Science and Technology, Kraków, Poland; LPI, ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain.
  • Bogusz F; AGH University of Science and Technology, Kraków, Poland.
  • Aja-Fernández S; LPI, ETSI Telecomunicación, Universidad de Valladolid, Valladolid, Spain.
  • Özarslan E; Department of Biomedical Engineering, Linköping University, Linköping, Sweden; Center for Medical Image Science and Visualization, Linköping University, Linköping, Sweden.
  • Jones DK; Cardiff University Brain Research, Imaging Centre (CUBRIC), School of Psychology, Cardiff University, Cardiff, United Kingdom.
  • Chen H; School of Instruments and Electronics, North University of China, Taiyuan, China.
  • Jin M; Department of Physics, University of Texas at Arlington, Arlington, USA.
  • Zhang Z; School of Instruments and Electronics, North University of China, Taiyuan, China.
  • Wang F; School of Instruments and Electronics, North University of China, Taiyuan, China.
  • Nath V; NVIDIA Corporation, Bethesda, USA.
  • Parvathaneni P; National Institute of Health, Bethesda, USA.
  • Morez J; Imec-Vision lab, Department of Physics, University of Antwerp, Antwerp, Belgium.
  • Sijbers J; Imec-Vision lab, Department of Physics, University of Antwerp, Antwerp, Belgium.
  • Jeurissen B; Imec-Vision lab, Department of Physics, University of Antwerp, Antwerp, Belgium.
  • Fadnavis S; Intelligent Systems Engineering, Indiana University Bloomington, Indiana, USA.
  • Endres S; Leibniz Institute for Materials Engineering - IWT, Faculty of Production Engineering, University of Bremen, Bremen, Germany.
  • Rokem A; Department of Psychology and the eScience Institute, University of Washington, Seattle, WA USA.
  • Garyfallidis E; Intelligent Systems Engineering, Indiana University Bloomington, Indiana, USA.
  • Sanchez I; QMENTA Inc, Boston, USA.
  • Prchkovska V; QMENTA Inc, Boston, USA.
  • Rodrigues P; QMENTA Inc, Boston, USA.
  • Landman BA; Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, USA.
  • Schilling KG; Vanderbilt University Institute of Imaging Science, Vanderbilt University, Nashville, USA; Department of Radiology and Radiological Science, Vanderbilt University Medical Center, Nashville, USA.
Neuroimage ; 240: 118367, 2021 10 15.
Article em En | MEDLINE | ID: mdl-34237442
Diffusion MRI (dMRI) has become an invaluable tool to assess the microstructural organization of brain tissue. Depending on the specific acquisition settings, the dMRI signal encodes specific properties of the underlying diffusion process. In the last two decades, several signal representations have been proposed to fit the dMRI signal and decode such properties. Most methods, however, are tested and developed on a limited amount of data, and their applicability to other acquisition schemes remains unknown. With this work, we aimed to shed light on the generalizability of existing dMRI signal representations to different diffusion encoding parameters and brain tissue types. To this end, we organized a community challenge - named MEMENTO, making available the same datasets for fair comparisons across algorithms and techniques. We considered two state-of-the-art diffusion datasets, including single-diffusion-encoding (SDE) spin-echo data from a human brain with over 3820 unique diffusion weightings (the MASSIVE dataset), and double (oscillating) diffusion encoding data (DDE/DODE) of a mouse brain including over 2520 unique data points. A subset of the data sampled in 5 different voxels was openly distributed, and the challenge participants were asked to predict the remaining part of the data. After one year, eight participant teams submitted a total of 80 signal fits. For each submission, we evaluated the mean squared error, the variance of the prediction error and the Bayesian information criteria. The received submissions predicted either multi-shell SDE data (37%) or DODE data (22%), followed by cartesian SDE data (19%) and DDE (18%). Most submissions predicted the signals measured with SDE remarkably well, with the exception of low and very strong diffusion weightings. The prediction of DDE and DODE data seemed more challenging, likely because none of the submissions explicitly accounted for diffusion time and frequency. Next to the choice of the model, decisions on fit procedure and hyperparameters play a major role in the prediction performance, highlighting the importance of optimizing and reporting such choices. This work is a community effort to highlight strength and limitations of the field at representing dMRI acquired with trending encoding schemes, gaining insights into how different models generalize to different tissue types and fiber configurations over a large range of diffusion encodings.
Assuntos

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Processamento de Imagem Assistida por Computador / Encéfalo / Bases de Dados Factuais / Redes Neurais de Computação / Imagem de Difusão por Ressonância Magnética Tipo de estudo: Prognostic_studies Limite: Animals / Humans Idioma: En Revista: Neuroimage Assunto da revista: DIAGNOSTICO POR IMAGEM Ano de publicação: 2021 Tipo de documento: Article

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Processamento de Imagem Assistida por Computador / Encéfalo / Bases de Dados Factuais / Redes Neurais de Computação / Imagem de Difusão por Ressonância Magnética Tipo de estudo: Prognostic_studies Limite: Animals / Humans Idioma: En Revista: Neuroimage Assunto da revista: DIAGNOSTICO POR IMAGEM Ano de publicação: 2021 Tipo de documento: Article