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ELIXIR biovalidator for semantic validation of life science metadata.
Liyanage, Isuru; Burdett, Tony; Droesbeke, Bert; Erdos, Karoly; Fernandez, Rolando; Gray, Alasdair; Haseeb, Muhammad; Jupp, Simon; Penim, Flavia; Pommier, Cyril; Rocca-Serra, Philippe; Courtot, Mélanie; Coppens, Frederik.
Afiliação
  • Liyanage I; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Burdett T; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Droesbeke B; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium.
  • Erdos K; VIB Center for Plant Systems Biology, 9052 Ghent, Belgium.
  • Fernandez R; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Gray A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Haseeb M; Department of Computer Science, Heriot-Watt University, Edinburgh EH14 4AS, UK.
  • Jupp S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Penim F; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Pommier C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton CB10 1SD, UK.
  • Rocca-Serra P; INRAE, BioinfOmics, Plant Bioinformatics Facility, Université Paris-Saclay, 78026 Versailles, France.
  • Courtot M; INRAE, URGI, Université Paris-Saclay, 78026 Versailles, France.
  • Coppens F; Department of Engineering Science, University of Oxford e-Research Centre, University of Oxford, Oxford OX1 3QG, UK.
Bioinformatics ; 38(11): 3141-3142, 2022 05 26.
Article em En | MEDLINE | ID: mdl-35380605
ABSTRACT

SUMMARY:

To advance biomedical research, increasingly large amounts of complex data need to be discovered and integrated. This requires syntactic and semantic validation to ensure shared understanding of relevant entities. This article describes the ELIXIR biovalidator, which extends the syntactic validation of the widely used AJV library with ontology-based validation of JSON documents. AVAILABILITY AND IMPLEMENTATION Source code https//github.com/elixir-europe/biovalidator, Release v1.9.1, License Apache License 2.0, Deployed at https//www.ebi.ac.uk/biosamples/schema/validator/validate. SUPPLEMENTARY INFORMATION Supplementary data are available at Bioinformatics online.
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Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas / Metadados Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Reino Unido
Texto completo
Adicionar na Minha BVS
Imprimir
XML
PubMed Links
Buscar no Google

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Disciplinas das Ciências Biológicas / Metadados Idioma: En Revista: Bioinformatics Assunto da revista: INFORMATICA MEDICA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Reino Unido