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ProTheRaMon - a GATE simulation framework for proton therapy range monitoring using PET imaging.
Borys, Damian; Baran, Jakub; Brzezinski, Karol W; Gajewski, Jan; Chug, Neha; Coussat, Aurelien; Czerwinski, Eryk; Dadgar, Meysam; Dulski, Kamil; Eliyan, Kavya Valsan; Gajos, Aleksander; Kacprzak, Krzysztof; Kaplon, Lukasz; Klimaszewski, Konrad; Konieczka, Pawel; Kopec, Renata; Korcyl, Grzegorz; Kozik, Tomasz; Krzemien, Wojciech; Kumar, Deepak; Lomax, Antony John; McNamara, Keegan; Niedzwiecki, Szymon; Olko, Pawel; Panek, Dominik; Parzych, Szymon; Del Río, Elena Pérez; Raczynski, Lech; Sharma, Sushil; Shivani, Shivani; Shopa, Roman Y; Skóra, Tomasz; Skurzok, Magdalena; Stasica, Paulina; Stepien, Ewa; Tayefi Ardebili, Keyvan; Tayefi, Faranak; Weber, Damien Charles; Winterhalter, Carla; Wislicki, Wojciech; Moskal, Pawel; Rucinski, Antoni.
Afiliação
  • Borys D; Department of Systems Biology and Engineering, Silesian University of Technology, ul. Akademicka 16, Gliwice, 44-100, POLAND.
  • Baran J; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Brzezinski KW; Institute of Nuclear Physics Polish Academy of Science, Radzikowskiego 152, Krakow, Krakow, Malopolska, 31-342, POLAND.
  • Gajewski J; Institute of Nuclear Physics Polish Academy of Science, Radzikowskiego 152, Krakow, Krakow, Malopolska, 31-342, POLAND.
  • Chug N; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, 30-348, POLAND.
  • Coussat A; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Czerwinski E; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Dadgar M; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Dulski K; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Eliyan KV; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Gajos A; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Kacprzak K; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Kaplon L; Faculty of Physics, Astronomy and Applied Computer Science, Jagiellonian University in Krakow, Lojasiewicza 11, Krakow, Malopolskie, 31-007, POLAND.
  • Klimaszewski K; National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Konieczka P; Department of Complex Systems, National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Kopec R; Institute of Nuclear Physics Polish Academy of Science, Radzikowskiego 152, Krakow, 31-342, POLAND.
  • Korcyl G; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Kozik T; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Krzemien W; National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Kumar D; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Lomax AJ; Department of Radiation Medicine, Paul Scherrer Institute, CH-5232 Villigen PSI, Villigen, 5232, SWITZERLAND.
  • McNamara K; Center for Proton Therapy, Paul Scherrer Institute PSI, Forschungsstrasse 111, Villigen, Aargau, 5232, SWITZERLAND.
  • Niedzwiecki S; Institute of Physics, Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Olko P; PAN, Institute of Nuclear Physics Polish Academy of Science, ul Radzikowskiego 152, Krakow, Kraków, 31-342, POLAND.
  • Panek D; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Parzych S; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Del Río EP; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Raczynski L; National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Sharma S; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Shivani S; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Shopa RY; National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Skóra T; Radiotherapy, Maria Sklodowska-Curie National Research Institute of Oncology in Warsaw, Krakow Branch, Walerego Eljasza, Radzikowskiego 152, Kraków, 31-342, POLAND.
  • Skurzok M; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Stasica P; Institute of Nuclear Physics Polish Academy of Science, Radzikowskiego 152, Krakow, PL 31-342, POLAND.
  • Stepien E; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Tayefi Ardebili K; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Tayefi F; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Weber DC; Center for Proton Therapy, Paul Scherrer Institute, Forschungsstrasse 111, Villigen, 5232, SWITZERLAND.
  • Winterhalter C; Paul Scherrer Institute PSI, Forschungsstrasse 111, Villigen, Aargau, 5232, SWITZERLAND.
  • Wislicki W; National Centre for Nuclear Research, 7 Andrzeja Soltana str., Otwock, 05-400, POLAND.
  • Moskal P; Jagiellonian University in Krakow Faculty of Physics Astronomy and Applied Computer Science, Lojasiewicza 11, Krakow, Malopolskie, 30-348, POLAND.
  • Rucinski A; Institute of Nuclear Physics PAS, Radzikowskiego 152, Krakow, 31-342, POLAND.
Phys Med Biol ; 2022 Sep 22.
Article em En | MEDLINE | ID: mdl-36137551
ABSTRACT

OBJECTIVE:

This paper reports on the implementation and shows examples of the use of the ProTheRaMon framework for simulating the delivery of proton therapy treatment plans and range monitoring using positron emission tomography (PET). ProTheRaMon offers complete processing of proton therapy treatment plans, patient CT geometries, and intra-treatment PET imaging, taking into account therapy and imaging coordinate systems and activity decay during the PET imaging protocol specific to a given proton therapy facility. We present the ProTheRaMon framework and illustrate its potential use case and data processing steps for a patient treated at the Cyclotron Centre Bronowice (CCB) proton therapy center in Krakow, Poland.

APPROACH:

The ProTheRaMon framework is based on GATE Monte Carlo software, the CASToR reconstruction package and in-house developed Python and bash scripts. The framework consists of five separated simulation and data processing steps, that can be further optimized according to the user's needs and specific settings of a given proton therapy facility and PET scanner design. MAIN

RESULTS:

ProTheRaMon is presented using example data from a patient treated at CCB and the J-PET scanner to demonstrate the application of the framework for proton therapy range monitoring. The output of each simulation and data processing stage is described and visualized.

SIGNIFICANCE:

We demonstrate that the ProTheRaMon simulation platform is a high-performance tool, capable of running on a computational cluster and suitable for multi-parameter studies, with databases consisting of large number of patients, as well as different PET scanner geometries and settings for range monitoring in a clinical environment. Due to its modular structure, the ProTheRaMon framework can be adjusted for different proton therapy centers and/or different PET detector geometries. It is available to the community via github.
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Texto completo: 1 Bases de dados: MEDLINE Tipo de estudo: Guideline Idioma: En Revista: Phys Med Biol Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Polônia

Texto completo: 1 Bases de dados: MEDLINE Tipo de estudo: Guideline Idioma: En Revista: Phys Med Biol Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Polônia