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Dynamic spatiotemporal determinants modulate GPCR:G protein coupling selectivity and promiscuity.
Sandhu, Manbir; Cho, Aaron; Ma, Ning; Mukhaleva, Elizaveta; Namkung, Yoon; Lee, Sangbae; Ghosh, Soumadwip; Lee, John H; Gloriam, David E; Laporte, Stéphane A; Babu, M Madan; Vaidehi, Nagarajan.
Afiliação
  • Sandhu M; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA. msandhu@stjude.org.
  • Cho A; Department of Structural Biology, Center for Data Driven Discovery, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA. msandhu@stjude.org.
  • Ma N; Department of Medicine, Research Institute of the McGill University Health Centre, Montreal, QC, H4A 3J1, Canada.
  • Mukhaleva E; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Namkung Y; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Lee S; Irell and Manella Graduate School of Biological Sciences, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Ghosh S; Department of Medicine, Research Institute of the McGill University Health Centre, Montreal, QC, H4A 3J1, Canada.
  • Lee JH; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Gloriam DE; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Laporte SA; Department of Computational and Quantitative Medicine, Beckman Research Institute of the City of Hope, Duarte, CA, 91010, USA.
  • Babu MM; Department of Drug Design and Pharmacology, Faculty of Health and Medical Sciences, University of Copenhagen, 2100, Copenhagen, Denmark.
  • Vaidehi N; Department of Medicine, Research Institute of the McGill University Health Centre, Montreal, QC, H4A 3J1, Canada.
Nat Commun ; 13(1): 7428, 2022 12 02.
Article em En | MEDLINE | ID: mdl-36460632
Recent studies have shown that G protein coupled receptors (GPCRs) show selective and promiscuous coupling to different Gα protein subfamilies and yet the mechanisms of the range of coupling preferences remain unclear. Here, we use Molecular Dynamics (MD) simulations on ten GPCR:G protein complexes and show that the location (spatial) and duration (temporal) of intermolecular contacts at the GPCR:Gα protein interface play a critical role in how GPCRs selectively interact with G proteins. We identify that some GPCR:G protein interface contacts are common across Gα subfamilies and others specific to Gα subfamilies. Using large scale data analysis techniques on the MD simulation snapshots we derive a spatio-temporal code for contacts that confer G protein selective coupling and validated these contacts using G protein activation BRET assays. Our results demonstrate that promiscuous GPCRs show persistent sampling of the common contacts more than G protein specific contacts. These findings suggest that GPCRs maintain contact with G proteins through a common central interface, while the selectivity comes from G protein specific contacts at the periphery of the interface.
Assuntos

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Bioensaio / Simulação de Dinâmica Molecular Tipo de estudo: Prognostic_studies Idioma: En Revista: Nat Commun Assunto da revista: BIOLOGIA / CIENCIA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos

Texto completo: 1 Bases de dados: MEDLINE Assunto principal: Bioensaio / Simulação de Dinâmica Molecular Tipo de estudo: Prognostic_studies Idioma: En Revista: Nat Commun Assunto da revista: BIOLOGIA / CIENCIA Ano de publicação: 2022 Tipo de documento: Article País de afiliação: Estados Unidos