Figeno: multi-region genomic figures with long-read support.
Bioinformatics
; 40(6)2024 Jun 03.
Article
em En
| MEDLINE
| ID: mdl-38857451
ABSTRACT
SUMMARY:
The vast amount of publicly available genomic data requires analysis and visualization tools. Here, we present figeno, an application for generating publication-quality FIgures for GENOmics. Figeno particularly focuses on multi-region views across genomic breakpoints and on long reads with base modifications. In addition, we support epigenomic data including ATAC-seq, ChIP-seq or HiC, as well as whole genome sequencing data with copy numbers and structural variants. AVAILABILITY AND IMPLEMENTATION Figeno is available as a python package with both a command line and graphical user interface. It can be installed via PyPI and the source code is available at https//github.com/CompEpigen/figeno.
Texto completo:
1
Bases de dados:
MEDLINE
Assunto principal:
Software
/
Genômica
Limite:
Humans
Idioma:
En
Revista:
Bioinformatics
Assunto da revista:
INFORMATICA MEDICA
Ano de publicação:
2024
Tipo de documento:
Article
País de afiliação:
Alemanha