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1.
FASEB J ; 37(3): e22786, 2023 03.
Artigo em Inglês | MEDLINE | ID: mdl-36786724

RESUMO

Adherens junctions (AJs) are a defining feature of all epithelial cells. They regulate epithelial tissue architecture and integrity, and their dysregulation is a key step in tumor metastasis. AJ remodeling is crucial for cancer progression, and it plays a key role in tumor cell survival, growth, and dissemination. Few studies have examined AJ remodeling in cancer cells consequently, it remains poorly understood and unleveraged in the treatment of metastatic carcinomas. Fascin1 is an actin-bundling protein that is absent from the normal epithelium but its expression in colon cancer is linked to metastasis and increased mortality. Here, we provide the molecular mechanism of AJ remodeling in colon cancer cells and identify for the first time, fascin1's function in AJ remodeling. We show that in colon cancer cells fascin1 remodels junctional actin and actomyosin contractility which makes AJs less stable but more dynamic. By remodeling AJs fascin1 drives mechanoactivation of WNT/ß-catenin signaling and generates "collective plasticity" which influences the behavior of cells during cell migration. The impact of mechanical inputs on WNT/ß-catenin activation in cancer cells remains poorly understood. Our findings highlight the role of AJ remodeling and mechanosensitive WNT/ß-catenin signaling in the growth and dissemination of colorectal carcinomas.


Assuntos
Junções Aderentes , Neoplasias do Colo , Humanos , Junções Aderentes/metabolismo , Actinas/metabolismo , beta Catenina/metabolismo , Proteínas dos Microfilamentos/metabolismo , Neoplasias do Colo/metabolismo , Caderinas/metabolismo
2.
PLoS Comput Biol ; 19(1): e1010243, 2023 01.
Artigo em Inglês | MEDLINE | ID: mdl-36649322

RESUMO

A small fraction of infectious bacteria use persistence as a strategy to survive exposure to antibiotics. Periodic pulse dosing of antibiotics has long been considered a potentially effective strategy towards eradication of persisters. Recent studies have demonstrated through in vitro experiments that it is indeed feasible to achieve such effectiveness. However, systematic design of periodic pulse dosing regimens to treat persisters is currently lacking. Here we rigorously develop a methodology for the systematic design of optimal periodic pulse dosing strategies for rapid eradication of persisters. A key outcome of the theoretical analysis, on which the proposed methodology is based, is that bactericidal effectiveness of periodic pulse dosing depends mainly on the ratio of durations of the corresponding on and off parts of the pulse. Simple formulas for critical and optimal values of this ratio are derived. The proposed methodology is supported by computer simulations and in vitro experiments.


Assuntos
Antibacterianos , Bactérias , Antibacterianos/farmacologia
3.
Soft Matter ; 20(4): 837-847, 2024 Jan 24.
Artigo em Inglês | MEDLINE | ID: mdl-38170621

RESUMO

Porous media used in many practical applications contain natural spatial variations in composition and surface charge that lead to heterogeneous physicochemical attractions between the media and transported particles. We performed Stokesian dynamics (SD) simulations to examine the effects of heterogeneous attractions on quiescent diffusion and hydrodynamic dispersion of particles within geometrically ordered arrays of nanoposts. We find that transport under quiescent conditions occurs by two mechanisms, diffusion through the void space and intermittent hopping between the attractive wells of different nanoposts. As the attraction heterogeneity increases, the latter mechanism becomes dominant, resulting in an increase in the particle trajectory tortuosity, deviations from Gaussian behavior in the particle displacement distributions, and a decrease in the long-time particle diffusivity. Similarly, under flow conditions corresponding to low Péclet number (Pe), increased attraction heterogeneity leads to transient localization near the nanoposts, resulting in a broadening of the particle distribution and enhanced longitudinal dispersion in the direction of flow. At high Pe where advection strongly dominates, however, the longitudinal dispersion coefficient is insensitive to attraction heterogeneity and exhibits Taylor-Aris dispersion behavior. Our findings provide insight into how heterogeneous interactions may influence particle transport in complex 3-D porous media.

4.
Soft Matter ; 20(11): 2575-2583, 2024 Mar 13.
Artigo em Inglês | MEDLINE | ID: mdl-38415982

RESUMO

A fundamental assumption of the classical theories of crystal nucleation is that the individual molecules from the "old" phase associate to an emerging nucleus individually and sequentially. Numerous recent studies of crystal nucleation in solution have revealed nonclassical pathways, whereby crystal nuclei are hosted and fed by amorphous clusters pre-formed in the solution. A sizable knowledge gap has persisted, however, in the definition of the molecular-level parameters that direct a solute towards classical or nonclassical nucleation. Here we construct a suspension of colloid particles of hydrodynamic diameter 1.1 µm and monitor their individual motions towards a quasi-two-dimensional crystal by scanning confocal microscopy. We combine electrostatic repulsion and polymer-induced attraction to obtain a simple isotropic pair interaction potential with a single attractive minimum of tunable depth between 1.2kBT and 2.7kBT. We find that even the smallest aggregates that form in this system structure as hexagonal two-dimensional crystals and grow and maturate by the association and exchange of single particles from the solution, signature behaviors during classical nucleation. The particles in the suspension equilibrate with those in the clusters and the volume fractions of suspensions at equilibrium correspond to straightforward thermodynamic predictions based on depth of the interparticle attraction. These results demonstrate that classical nucleation is selected by particles interacting with a minimal potential and present a benchmark for future modifications of the molecular interactions that may induce nonclassical nucleation.

5.
Soft Matter ; 20(37): 7397-7404, 2024 Sep 25.
Artigo em Inglês | MEDLINE | ID: mdl-39021099

RESUMO

Escherichia coli expresses surface appendages including fimbriae, flagella, and curli, at various levels in response to environmental conditions and external stimuli. Previous studies have revealed an interplay between expression of fimbriae and flagella in several E. coli strains, but how this regulation between fimbrial and flagellar expression affects adhesion to interfaces is incompletely understood. Here, we investigate how the concurrent expression of fimbriae and flagella by engineered strains of E. coli MG1655 affects their adhesion at liquid-solid and liquid-liquid interfaces. We tune fimbrial and flagellar expression on the cell surface through plasmid-based inducible expression of the fim operon and fliC-flhDC genes. We show that increased fimbrial expression increases interfacial adhesion as well as bacteria-driven actuation of micron-sized objects. Co-expression of flagella in fimbriated bacteria, however, does not greatly affect either of these properties. Together, these results suggest that interfacial adhesion as well as motion actuated by adherent bacteria can be altered by controlling the expression of surface appendages.


Assuntos
Aderência Bacteriana , Proteínas de Escherichia coli , Escherichia coli , Fímbrias Bacterianas , Flagelos , Flagelos/metabolismo , Flagelos/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Fímbrias Bacterianas/metabolismo , Fímbrias Bacterianas/genética , Proteínas de Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Óperon , Regulação Bacteriana da Expressão Gênica , Flagelina , Transativadores
6.
Analyst ; 149(5): 1665, 2024 Feb 26.
Artigo em Inglês | MEDLINE | ID: mdl-38348476

RESUMO

Correction for 'Smartphone-read phage lateral flow assay for point-of-care detection of infection' by Maede Chabi, et al., Analyst, 2023, 148, 839-848, https://doi.org/10.1039/D2AN01499H.

7.
Langmuir ; 39(24): 8532-8539, 2023 Jun 20.
Artigo em Inglês | MEDLINE | ID: mdl-37290000

RESUMO

Understanding molecular transport in polyelectrolyte brushes (PEBs) is crucial for applications such as separations, drug delivery, anti-fouling, and biosensors, where structural features of the polymer control intermolecular interactions. The complex structure and local heterogeneity of PEBs, while theoretically predicted, are not easily accessed with conventional experimental methods. In this work, we use 3D single-molecule tracking to understand transport behavior within a cationic poly(2-(N,N-dimethylamino)ethyl acrylate) (PDMAEA) brush using an anionic dye, Alexa Fluor 546, as the probe. The analysis is done by a parallelized, unbiased 3D tracking algorithm. Our results explicitly demonstrate that spatial heterogeneity within the brush manifests as heterogeneity of single-molecule displacements. Two distinct populations of probe motion are identified, with anticorrelated axial and lateral transport confinement, which we believe to correspond to intra- vs inter-chain probe motion.

8.
Soft Matter ; 19(23): 4333-4344, 2023 Jun 14.
Artigo em Inglês | MEDLINE | ID: mdl-37254920

RESUMO

We use molecular simulation to investigate the pH response of sequence-controlled polyampholyte brushes (PABs) with polymer chains consisting of alternating blocks of weakly acidic and basic monomers. Changes in the ionization state, height, lateral structure, and chain conformations of PABs with pH are found to differ qualitatively from those observed for polyelectrolyte brushes. Grafting density has a relatively modest effect on PAB properties. By contrast, monomer sequence strongly affects the pH response, with the extent of the response increasing with the block size. This trend is attributed to strong electrostatic attractions between oppositely charged blocks, which lead to an increase in chain backfolding as block size increases. This behavior is consistent with that observed for polyampholytes with similar monomer sequences in solution in previous studies. Our study shows that monomer sequence can be used to tune the pH response of weak PABs to generate stimuli-responsive surfaces.

9.
Analyst ; 148(4): 839-848, 2023 Feb 13.
Artigo em Inglês | MEDLINE | ID: mdl-36645184

RESUMO

The COVID-19 pandemic has highlighted the urgent need for sensitive, affordable, and widely accessible testing at the point of care. Here we demonstrate a new, universal LFA platform technology using M13 phage conjugated with antibodies and HRP enzymes that offers high analytical sensitivity and excellent performance in a complex clinical matrix. We also report its complete integration into a sensitive chemiluminescence-based smartphone-readable lateral flow assay for the detection of SARS-CoV-2 nucleoprotein. We screened 84 anti-nucleoprotein monoclonal antibody pairs in phage LFA and identified an antibody pair that gave an LoD of 25 pg mL-1 nucleoprotein in nasal swab extract using a FluorChem gel documentation system and 100 pg mL-1 when the test was imaged and analyzed by an in-house-developed smartphone reader. The smartphone-read LFA signals for positive clinical samples tested (N = 15, with known Ct) were statistically different (p < 0.001) from signals for negative clinical samples (N = 11). The phage LFA technology combined with smartphone chemiluminescence imaging can enable the timely development of ultrasensitive, affordable point-of-care testing platforms for SARS-CoV-2 and beyond.


Assuntos
Bacteriófagos , COVID-19 , Humanos , Sistemas Automatizados de Assistência Junto ao Leito , COVID-19/diagnóstico , SARS-CoV-2 , Smartphone , Pandemias , Anticorpos , Testes Imediatos , Sensibilidade e Especificidade
10.
J Chem Phys ; 157(11): 114903, 2022 Sep 21.
Artigo em Inglês | MEDLINE | ID: mdl-36137785

RESUMO

We report a colloid-polymer model system with tunable bridging interactions for microscopic studies of structure and dynamics using confocal imaging. The interactions between trifluoroethyl methacrylate-co-tert-butyl methacrylate copolymer particles and poly(acrylic acid) (PAA) polymers were controllable via polymer concentration and pH. The strength of adsorption of PAA on the particles, driven by pH-dependent interactions with polymer brush stabilizers on the particle surfaces, was tuned via solution pH. Particle-polymer suspensions formulated at low pH, where polymers strongly adsorbed to the particles, contained clusters or weak gels at particle volume fractions of ϕ = 0.15 and ϕ = 0.40. At high pH, where the PAA only weakly adsorbed to the particle surface, particles largely remained dispersed, and the suspensions behaved as a dense fluid. The ability to visualize the suspension structure is likely to provide insight into the role of polymer-driven bridging interactions in the behavior of colloidal suspensions.

11.
Phys Biol ; 18(5)2021 06 23.
Artigo em Inglês | MEDLINE | ID: mdl-33462162

RESUMO

Bacterial biofilms are communities of bacteria that exist as aggregates that can adhere to surfaces or be free-standing. This complex, social mode of cellular organization is fundamental to the physiology of microbes and often exhibits surprising behavior. Bacterial biofilms are more than the sum of their parts: single-cell behavior has a complex relation to collective community behavior, in a manner perhaps cognate to the complex relation between atomic physics and condensed matter physics. Biofilm microbiology is a relatively young field by biology standards, but it has already attracted intense attention from physicists. Sometimes, this attention takes the form of seeing biofilms as inspiration for new physics. In this roadmap, we highlight the work of those who have taken the opposite strategy: we highlight the work of physicists and physical scientists who use physics to engage fundamental concepts in bacterial biofilm microbiology, including adhesion, sensing, motility, signaling, memory, energy flow, community formation and cooperativity. These contributions are juxtaposed with microbiologists who have made recent important discoveries on bacterial biofilms using state-of-the-art physical methods. The contributions to this roadmap exemplify how well physics and biology can be combined to achieve a new synthesis, rather than just a division of labor.


Assuntos
Aderência Bacteriana/fisiologia , Fenômenos Fisiológicos Bacterianos , Biofilmes , Percepção de Quorum/fisiologia , Biofilmes/crescimento & desenvolvimento
12.
Soft Matter ; 17(37): 8474-8482, 2021 Sep 29.
Artigo em Inglês | MEDLINE | ID: mdl-34586147

RESUMO

We identify factors leading to aggregation of bacteria in the presence of a surfactant using absorbance and microscopy. Two marine bacteria, Marinobacter hydrocarbonoclasticus SP17 and Halomonas titanicae Bead 10BA, formed aggregates of a broad size distribution in synthetic sea water in the presence of an anionic surfactant, dioctyl sodium sulfosuccinate (DOSS). Both DOSS at high concentrations and calcium ions were necessary for aggregate formation, but DOSS micelles were not required for aggregation. Addition of proteinase K but not DNase1 eliminated aggregate formation over two hours. Finally, swimming motility also enhanced aggregate formation.


Assuntos
Cálcio , Tensoativos , Bactérias , Halomonas , Íons , Marinobacter
13.
Analyst ; 146(15): 4835-4840, 2021 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-34198311

RESUMO

We introduce analyte-dependent exclusion of reporter reagents from restricted-access adsorbents as the basis of an isocratic reporter-exclusion immunoassay for viruses, proteins, and other analytes. Capto™ Core 700 and related resins possess a noninteracting size-selective outer layer surrounding a high-capacity nonspecific mixed-mode capture adsorbent core. In the absence of analyte, antibody-enzyme reporter conjugates can enter the adsorbent and be captured, and their signal is lost. In the presence of large or artificially-expanded analytes, reporter reagents bind to analyte species to form complexes large enough to be excluded from the adsorbent core, allowing their signal to be observed. This assay principle is demonstrated using M13 bacteriophage virus and human chorionic gonadotropin as model analytes. The simple isocratic detection approach described here allows a rapid implementation of immunoassay for detection of a wide range of analytes and uses inexpensive, generally-applicable, and stable column materials instead of costly analyte-specific immunoaffinity adsorbents.


Assuntos
Bacteriófago M13 , Gonadotropina Coriônica , Humanos , Imunoensaio , Indicadores e Reagentes
14.
Langmuir ; 36(31): 9153-9159, 2020 Aug 11.
Artigo em Inglês | MEDLINE | ID: mdl-32678607

RESUMO

We investigate the mobility of polystyrene particles ranging from 100 to 790 nm in diameter in dilute and semidilute sodium polystyrene sulfonate (NaPSS) solutions using fluorescence microscopy. We tune the polymer conformations by varying the ionic strength of the solution. The nanoparticle mean-squared displacements evolve linearly with time at all time scales, indicating Fickian diffusive dynamics. In solutions of high ionic strength, chains adopt a random walk conformation and particle dynamics couple to the bulk zero-shear rate viscosity, according to the Stokes-Einstein picture. In solutions of low ionic strength, however, particle dynamics nonmonotonically deviate from bulk predictions as polymer concentration increases and are not accurately predicted by the available models. These nonmonotonic dynamics directly correlate with the non-Gaussianity in distributions of particle displacements, suggesting the emergence of a local confining length scale as polyelectrolyte concentration increases.

15.
Soft Matter ; 16(35): 8237-8244, 2020 Sep 16.
Artigo em Inglês | MEDLINE | ID: mdl-32935718

RESUMO

Adhesion of bacteria to liquid-liquid interfaces can play a role in the biodegradation of dispersed hydrocarbons and in biochemical and bioprocess engineering. Whereas thermodynamic factors underpinning adhesion are well studied, the role of bacterial activity on adhesion is less explored. Here, we show that bacterial motility enhances adhesion to surfactant-decorated oil droplets dispersed in artificial sea water. Motile Halomonas titanicae adhered to hexadecane droplets stabilized with dioctyl sodium sulfosuccinate (DOSS) more rapidly and at greater surface densities compared to nonmotile H. titanicae, whose flagellar motion was arrested through addition of a proton uncoupler. Increasing the concentration of DOSS reduced the surface density of both motile and nonmotile bacteria as a result of the reduced interfacial tension.


Assuntos
Ácido Dioctil Sulfossuccínico , Halomonas , Bactérias , Tensoativos
16.
Analyst ; 145(14): 4942-4949, 2020 Jul 21.
Artigo em Inglês | MEDLINE | ID: mdl-32500871

RESUMO

We have developed an immuno-PCR based diagnostic platform which couples detection antibodies to self-assembled, ultra-detectable DNA-avidin nanoparticles stabilized with poly(ethylene glycol) to link DNA amplification to target protein concentration. Electrostatic neutralization and cloaking of the PCR-amplifiable DNA labels by avidin and PEG coating reduces non-specific "stickiness" and enhances assay sensitivity. We further optimized the detectability of the nanoparticles by incorporating four repeats of a unique synthetic DNA PCR target into each nanoparticle. Using human chorionic gonadotropin hormone (hCG) as a model analyte, this platform was able to quantitate the target hCG protein in femtomolar concentrations using only standard laboratory equipment.


Assuntos
Avidina , Nanopartículas , Anticorpos , DNA/genética , Humanos , Reação em Cadeia da Polimerase
17.
J Ind Microbiol Biotechnol ; 47(9-10): 725-738, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-32743734

RESUMO

Motivated by the need for improved understanding of physical processes involved in bacterial biodegradation of catastrophic oil spills, we review biophysical methods to probe bacterial motility and adhesion at oil-water interfaces. This review summarizes methods that probe bulk, average behaviors as well as local, microscopic behaviors, and highlights opportunities for future work to bridge the gap between biodegradation and biophysics.


Assuntos
Bactérias , Biodegradação Ambiental , Poluição por Petróleo , Bactérias/metabolismo , Biofísica , Poluição por Petróleo/análise , Água
18.
Phys Rev Lett ; 122(22): 228003, 2019 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-31283281

RESUMO

Increased shear thinning arising due to strong attractive interactions between colloidal particles is thought to obscure shear thickening. Here, we demonstrate how moderate attractions, induced by adding a nonadsorbing polymer, can instead enhance shear thickening. We measure the rheology of colloidal suspensions at a constant particle volume fraction of ϕ=0.40 with dilute to weakly semidilute concentrations of three polyacrylamide depletants of different molecular weights. Suspensions containing large polymer exhibit increased shear thickening and positive first normal stress differences at high shear stress, and increased heterogeneous fluctuations in the boundary stress. These results are consistent with a friction-based model for shear thickening, suggesting that the presence of large, extended polymers induces the formation of near-spanning networks of interparticle contacts.

19.
Soft Matter ; 15(45): 9368-9375, 2019 Dec 07.
Artigo em Inglês | MEDLINE | ID: mdl-31693048

RESUMO

We show that oil droplets suspended near a liquid-solid interface can be driven to rotate by motile bacteria adhered to the droplet surface. Droplets rotate clockwise when viewed from the liquid side, due to symmetry-breaking hydrodynamic interactions of bacteria with the interface. The angular speed of rotation for droplets decreases as their size is increased. Differences in the speed of rotation driven by Escherichia coli, Shewanella haliotis, and Halomonas titanicae bacteria reflects differences in the number of bacteria adhered at the droplet surface and their interfacial affinity. Adding surfactant reduces the number of adherent bacteria and hence lowers the speed of rotation. Together, these results demonstrate that bacterial activity can be used to manipulate suspended droplets.


Assuntos
Fenômenos Fisiológicos Bacterianos , Hidrodinâmica , Movimento , Óleos/química , Rotação , Tensão Superficial
20.
Soft Matter ; 15(6): 1260-1268, 2019 Feb 06.
Artigo em Inglês | MEDLINE | ID: mdl-30444237

RESUMO

The hierarchical structure and dynamics of polymer solutions control the transport of nanoparticles (NPs) through them. Here, we perform multi-particle collision dynamics simulations of solutions of semiflexible polymer chains with tunable persistence length lp to investigate the effect of chain stiffness on NP transport. The NPs exhibit two distinct dynamical regimes - subdiffusion on short time scales and diffusion on long time scales. The long-time NP diffusivities are compared with predictions from the Stokes-Einstein relation (SER), mode-coupling theory (MCT), and a recent polymer coupling theory (PCT). Increasing deviations from the SER as the polymer chains become more rigid (i.e. as lp increases) indicate that the NP motions become decoupled from the bulk viscosity of the polymer solution. Likewise, polymer stiffness leads to deviations from PCT, which was developed for fully flexible chains. Independent of lp, however, the long-time diffusion behavior is well-described by MCT, particularly at high polymer concentration. We also observed that the short-time subdiffusive dynamics are strongly dependent on polymer flexibility. As lp is increased, the NP dynamics become more subdiffusive and decouple from the dynamics of the polymer chain center-of-mass. We posit that these effects are due to differences in the segmental mobility of the semiflexible chains.

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