Detalhe da pesquisa
1.
Accurate and fast graph-based pangenome annotation and clustering with ggCaller.
Genome Res
; 33(9): 1622-1637, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37620118
2.
Pneumococcal capsule expression is controlled through a conserved, distal cis-regulatory element during infection.
PLoS Pathog
; 19(1): e1011035, 2023 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-36719895
3.
Diverse regulatory pathways modulate bet hedging of competence induction in epigenetically-differentiated phase variants of Streptococcus pneumoniae.
Nucleic Acids Res
; 51(19): 10375-10394, 2023 10 27.
Artigo
em Inglês
| MEDLINE | ID: mdl-37757859
4.
RCandy: an R package for visualizing homologous recombinations in bacterial genomes.
Bioinformatics
; 38(5): 1450-1451, 2022 02 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-34864895
5.
Pneumococcal Vaccines: Host Interactions, Population Dynamics, and Design Principles.
Annu Rev Microbiol
; 72: 521-549, 2018 09 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-30200849
6.
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae.
PLoS Biol
; 18(10): e3000878, 2020 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-33091022
7.
Analysing pneumococcal invasiveness using Bayesian models of pathogen progression rates.
PLoS Comput Biol
; 18(2): e1009389, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35176026
8.
Fast and flexible bacterial genomic epidemiology with PopPUNK.
Genome Res
; 29(2): 304-316, 2019 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-30679308
9.
Epidemiological dynamics of bacteriocin competition and antibiotic resistance.
Proc Biol Sci
; 289(1984): 20221197, 2022 10 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-36196547
10.
Genome-wide epistasis and co-selection study using mutual information.
Nucleic Acids Res
; 47(18): e112, 2019 10 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-31361894
11.
Lineage-specific evolution and gene flow in Listeria monocytogenes are independent of bacteriophages.
Environ Microbiol
; 22(12): 5058-5072, 2020 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-32483914
12.
Excision-reintegration at a pneumococcal phase-variable restriction-modification locus drives within- and between-strain epigenetic differentiation and inhibits gene acquisition.
Nucleic Acids Res
; 46(21): 11438-11453, 2018 11 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-30321375
13.
Bayesian inference of ancestral dates on bacterial phylogenetic trees.
Nucleic Acids Res
; 46(22): e134, 2018 12 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-30184106
14.
Evolution of antibiotic resistance is linked to any genetic mechanism affecting bacterial duration of carriage.
Proc Natl Acad Sci U S A
; 114(5): 1075-1080, 2017 01 31.
Artigo
em Inglês
| MEDLINE | ID: mdl-28096340
15.
Diverse evolutionary patterns of pneumococcal antigens identified by pangenome-wide immunological screening.
Proc Natl Acad Sci U S A
; 114(3): E357-E366, 2017 01 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-28053228
16.
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
PLoS Genet
; 13(2): e1006508, 2017 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-28207813
17.
Methylation Warfare: Interaction of Pneumococcal Bacteriophages with Their Host.
J Bacteriol
; 201(19)2019 10 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-31285240
18.
The Contribution of Genetic Variation of Streptococcus pneumoniae to the Clinical Manifestation of Invasive Pneumococcal Disease.
Clin Infect Dis
; 68(1): 61-69, 2019 01 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29788414
19.
Transformation Asymmetry and the Evolution of the Bacterial Accessory Genome.
Mol Biol Evol
; 35(3): 575-581, 2018 Mar 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29211859
20.
Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648.
Antimicrob Agents Chemother
; 63(6)2019 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-30885899