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1.
Anal Chem ; 96(21): 8576-8585, 2024 May 28.
Artigo em Inglês | MEDLINE | ID: mdl-38712678

RESUMO

Quinolones, a widely used class of antibiotics, present significant environmental and health concerns if they excessively remain in the environment and in food. Aptamers specific to quinolones can be applied as bioreceptors for the detection of quinolone residues in the environment and food. The quinolone family contains dozens of different individuals that share the same core structure coupled with various substituents at six different positions. The diversity and complexity of the substitution sites make it a challenge to choose a set of representative molecules that encompass all the desired sites and preserve the core molecular framework for the screening of quinolone-specific aptamers via systematic evolution of ligands by exponential enrichment (SELEX). To address this challenge, we introduce a novel parallel-series strategy guided by Liebig's law for isolating quinolone-specific cross-reactive aptamers by using the library-immobilized SELEX method. Through this approach, we successfully identified 5 aptamers (Apt.AQ01-Apt.AQ05) with high binding affinity and excellent specificity to 24 different quinolone individuals. Among them, Apt.AQ03 showcased optimal performance with affinities ranging from 0.14 to 1.07 µM across the comprehensive set of 24 quinolones, exhibiting excellent specificity against nontarget interferents. The binding performance of Apt.AQ03 was further characterized with microscale thermophoresis, circular dichroism spectra, and an exonuclease digestion assay. By using Apt.AQ03 as a bioreceptor, a fluorescence resonance energy transfer (FRET) aptasensor was developed for the detection of 24 quinolones in milk, achieving a remarkable detection limit of 14.5-21.8 ng/mL. This work not only establishes a robust and effective strategy for selecting cross-reactive aptamers applicable to other small-molecule families but also provides high-quality aptamers for developing various high-throughput and reliable methods for the detection of multiple quinolone residues in food.


Assuntos
Aptâmeros de Nucleotídeos , Quinolonas , Técnica de Seleção de Aptâmeros , Aptâmeros de Nucleotídeos/química , Quinolonas/análise , Quinolonas/química , Técnica de Seleção de Aptâmeros/métodos , Animais , Leite/química
2.
J Environ Sci (China) ; 143: 35-46, 2024 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-38644022

RESUMO

Selenium (Se) in paddy rice is one of the significant sources of human Se nutrition. However, the effect of arsenic (As) pollution in soil on the translocation of Se species in rice plants is unclear. In this research, a pot experiment was designed to examine the effect of the addition of 50 mg As/kg soil as arsenite or arsenate on the migration of Se species from soil to indica Minghui 63 and Luyoumingzhan. The results showed that the antagonism between inorganic As and Se was closely related to the rice cultivar and Se oxidation state in soil. Relative to the standalone selenate treatment, arsenite significantly (p < 0.05) decreased the accumulation of selenocystine, selenomethionine and selenate in the roots, stems, sheaths, leaves, brans and kernels of both cultivars by 21.4%-100.0%, 40.0%-100.0%, 41.0%-100%, 5.4%-96.3%, 11.3%-100.0% and 26.2%-39.7% respectively, except for selenocystine in the kernels of indica Minghui 63 and selenomethionine in the leaves of indica Minghui 63 and the stems of indica Luyoumingzhan. Arsenate also decreased (p < 0.05) the accumulation of selenocystine, selenomethionine and selenate in the roots, stems, brans and kernels of both cultivars by 34.9%-100.0%, 30.2%-100.0%, 11.3%-100.0% and 5.6%-39.6% respectively, except for selenate in the stems of indica Minghui 63. However, relative to the standalone selenite treatment, arsenite and arsenate decreased (p < 0.05) the accumulation of selenocystine, selenomethionine and selenite only in the roots of indica Minghui 63 by 45.5%-100.0%. Our results suggested that arsenite and arsenate had better antagonism toward Se species in selenate-added soil than that in selenite-added soil; moreover, arsenite had a higher inhibiting effect on the accumulation of Se species than arsenate.


Assuntos
Arsênio , Oryza , Selênio , Poluentes do Solo , Solo , Oryza/metabolismo , Poluentes do Solo/análise , Poluentes do Solo/metabolismo , Selênio/análise , Selênio/metabolismo , Arsênio/análise , Arsênio/metabolismo , Solo/química , Arsenitos
3.
Anal Chem ; 95(27): 10438-10447, 2023 07 11.
Artigo em Inglês | MEDLINE | ID: mdl-37382204

RESUMO

It is an urgent need to develop simple and high-throughput methods for simultaneously screening and detecting multiple or groups of sulfonamides (SAs) in animal-derived foods since various SAs were alternately used in animal husbandry to avoid generating drug resistance. We herein developed a novel HCl-reduced nicotinamide adenine dinucleotide I (NADH)-ascorbic acid (AA)-mediated gold nanobipyramids (AuNBPs) growth system, which can precisely regulate the growth rate of AuNBPs, to generate two colorful and stable AA-corresponding multicolor signal channels with different sensitivities. Based on the HCl-NADH-AA-mediated AuNBP growth system, we further developed a dual-channel multicolor immunoassay for simultaneously realizing rapid screening and detection of 5 SAs (sulfamethazine, sulfamethoxydiazine, sulfisomidine, sulfamerazine, and sulfamonomethoxine) by using a paper-based analytical device for sensitively and stably reading out the signal and a broad-specificity anti-SAs antibody as a bio-receptor. The developed immunoassay has more color changes, a wider linear range, excellent specificity and stability, and two multicolor signal channels (L-channel and H-channel) with different sensitivities. The H-channel exhibited 7-8 SAs-corresponding color changes and can be used to detect 5 target SAs with a visual detection limit of 0.1-0.5 ng/mL and a spectrometry detection limit of 0.05-0.16 ng/mL. The L-channel exhibited 7-9 SAs-corresponding color changes and can be used to detect 5 target SAs with a visual detection limit of 2.0-6.0 ng/mL and a spectrometry detection limit of 0.40-1.47 ng/mL. The developed immunoassay was successfully used to simultaneously screen and detect low-concentration and high-concentration of target SAs in milk and fish muscle samples with a recovery of 85-110% and an RSD (n = 5) < 8%. The visual detection limit of our immunoassay is much lower than the maximum residue limit of total SAs in edible tissue. All above features make our immunoassay a promising assay for simultaneously realizing the rapid screening and quantitative determination of multiple SA residues in food by bare eye observation. It must be mentioned that our immunoassay may be expended as a general method for the simultaneous visual screening and detection of other drugs using the corresponding antibody as a recognition probe.


Assuntos
NAD , Sulfonamidas , Animais , Sulfonamidas/química , Ouro/química , Colorimetria , Ácido Ascórbico/química , Anticorpos , Sulfanilamida , Imunoensaio/métodos , Limite de Detecção
4.
Anal Chem ; 95(11): 5024-5033, 2023 03 21.
Artigo em Inglês | MEDLINE | ID: mdl-36942461

RESUMO

Enzyme mimics now play a significant role in biochemistry. Especially, peroxidase mimics have been widely used for developing colorimetric sensors of blood glucose. The peroxidase mimics previously reported could not be recycled for reusing and may generate scattering to cause unwanted optical interference when it was used for fabricating colorimetric sensors. We herein prepared a broad-applicable and reusable magnetic enzyme-loading nanoplatform with enhanced peroxidase-like activity by simultaneously loading Fe3O4 nanoparticles (Fe3O4NPs) and palladium nanoparticles (PdNPs) on graphitic carbon nitride (g-C3N4) nanosheets (Fe3O4NPs/PdNPs/g-C3N4). The prepared Fe3O4NPs/PdNPs/g-C3N4 possesses stable and enhanced peroxidase-like activity and good enzyme-loading capacity and can be used to load various natural enzymes to form highly-efficient and stable double-active nanozyme for fabricating colorimetric sensors for the visual detection of small molecules. Especially, the magnetic feature facilitates the magnetic separation of Fe3O4NPs/PdNPs/g-C3N4 from sample solution, which is in favor of recycling and eliminating the optical interference caused by nanozyme in colorimetric sensors. The prepared Fe3O4NPs/PdNPs/g-C3N4 has been successfully used to load glucose oxidase (GOx) and cholesterol oxidase (Chox) to form magnetic peroxidase-GOx and peroxidase-Chox double-active nanozymes, which can be used to fabricate colorimetric methods for the detection of glucose and cholesterol, respectively, with a visual detection limit of 15 µM and a spectrometry detection limit of 1.0 µM. With the developed glucose and cholesterol detection methods, we have successfully detected glucose and cholesterol in serum with a recovery of 98-104% and a RSD (n = 5) < 5%. With high peroxidase-like activity, good stability, reusable features, and broad applicability of loading enzyme, the developed magnetic Fe3O4NPs/PdNPs/g-C3N4 provided a promising approach for fabricating cost-effective, sensitive, and simple colorimetric sensors for the visual detection of various small molecules.


Assuntos
Nanopartículas Metálicas , Paládio/química , Glucose/análise , Peroxidase/química , Peroxidases/química , Colorimetria/métodos , Glucose Oxidase/química , Corantes/química , Fenômenos Magnéticos , Peróxido de Hidrogênio/análise
5.
Inorg Chem ; 62(29): 11708-11717, 2023 Jul 24.
Artigo em Inglês | MEDLINE | ID: mdl-37441738

RESUMO

A new iridium(III) complex was synthesized and characterized. Its photophysical properties and aggregation-induced emission and electrochemiluminescence in the near-infrared range were studied. The large conjugated cyclometallic ligand 1,2-phenylbenzoquinoline (pbq) was selected to form the Ir-C bond with the metal iridium(III) center and provide near-infrared emission of the complex. The auxiliary ligand 4,4'-diamino-2,2'-bipyridine (dabpy) can form hydrogen bonds, which was beneficial for the generation of aggregation-induced emission. The complex was aggregated into small spherical nanoparticles in 80% water and fascinating nanorings in 90% water. The sensing of ampicillin sodium (AMP) antibiotic by the iridium(III) complex were also investigated by photoluminescent and electrochemiluminescent methods. The complex showed a good selectivity toward AMP antibiotic compared to sodium phenylacetate and other eight antibiotics. The detection limits for AMP antibiotic was 0.76 µg/mL. This work provided a new strategy for the design of iridium(III) complex-based aggregation-induced emission and electrochemiluminescence probes for the sensing application.


Assuntos
Medições Luminescentes , Espectroscopia de Luz Próxima ao Infravermelho , Espectroscopia de Luz Próxima ao Infravermelho/métodos , Ampicilina/química , Antibacterianos/química , Irídio/química , Medições Luminescentes/métodos
6.
Inorg Chem ; 62(37): 14998-15005, 2023 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-37655478

RESUMO

Although ionic liquids (ILs) are of prime interest for the synthesis of various nanomaterials, they are scarcely utilized for the polyhydrido copper(I) [Cu(I)H] clusters. Herein, two air-stable Cu(I)H clusters, [Cu8H6(dppy)6](NTf2)2 (Cu8H6) and {Cu12H9(dppy)6[N(CN)2]3} (Cu12H9), are synthesized in high yields for the first time from the ILs-driven conversion of an unprecedented cluster [Cu7H5(dppy)6](ClO4)2 (Cu7H5) by a facile three-layers diffusion crystal (TLDC) method, strategically introducing IL-NTf2 and IL-N(CN)2 as two types of unusual interfacial crystallized templates, respectively. Their structures are fully characterized by various spectroscopic methods and X-ray crystallography, which shows that the anion of IL plays an important role as an anion template and an anion ligand in controlling the structural conversion of Cu(I)H clusters. Their photophysical properties are also investigated, and it is found that all reported clusters exhibit red luminescence with λem ranging from 600 to 690 nm.

7.
Mikrochim Acta ; 190(6): 217, 2023 05 13.
Artigo em Inglês | MEDLINE | ID: mdl-37173583

RESUMO

Serum levels of uric acid (UA) play an important role in the prevention of diseases. Developing a rapid and accurate way to detect UA is still a meaningful task. Hence, positively charged manganese dioxide nanosheets (MnO2NSs) with an average latter size of 100 nm and an ultra-thin thickness of below 1 nm have been prepared. They can be well dispersed in water and form stable yellow-brown solutions. The MnO2NSs can be decomposed by UA via redox reaction, leading to a decline of a characteristic absorption peak (374 nm) and a color fading of MnO2NSs solution. On this basis, an enzyme-free colorimetric sensing system for the detection of UA has been developed. The sensing system shows many advantages, including a wide linear range of 0.10-50.0 µmol/L, a limit of quantitation (LOQ) of 0.10 µmol/L, a low limit of detection (LOD) of 0.047 µmol/L (3σ/m), and rapid response without need of strict time control. Moreover, a simple and convenient visual sensor for UA detection has also been developed by adding an appropriate amount of phthalocyanine to provide a blue background color, which helps to increase visual discrimination. Finally, the strategy has been successfully applied to detect UA in human serum and urine samples.


Assuntos
Colorimetria , Ácido Úrico , Humanos , Óxidos , Compostos de Manganês
8.
Anal Chem ; 94(28): 10082-10090, 2022 07 19.
Artigo em Inglês | MEDLINE | ID: mdl-35797425

RESUMO

Aptamers are single-stranded oligonucleotides isolated in vitro that bind specific targets with high affinity and are commonly used as receptors in biosensors. Aptamer-based dye-displacement assays are a promising sensing platform because they are label-free, sensitive, simple, and rapid. However, these assays can exhibit impaired sensitivity in biospecimens, which contain numerous interferents that cause unwanted absorbance, scattering, and fluorescence in the UV-vis region. Here, this problem is overcome by utilizing near-infrared (NIR) signatures of the dye 3,3'-diethylthiadicarbocyanine iodide (Cy5). Cy5 initially complexes with aptamers as monomers and dimers; aptamer-target binding displaces the dye into solution, resulting in the formation of J-aggregates that provide a detectable NIR signal. The generality of our assay is demonstrated by detecting three different small-molecule analytes with their respective DNA aptamers at clinically relevant concentrations in serum and urine. These successful demonstrations show the utility of dye-aptamer NIR biosensors for high-throughput detection of analytes in clinical specimens.


Assuntos
Aptâmeros de Nucleotídeos , Técnicas Biossensoriais , Aptâmeros de Nucleotídeos/química , Bioensaio , Técnicas Biossensoriais/métodos
9.
Analyst ; 147(12): 2802-2808, 2022 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-35611629

RESUMO

Surface enhanced Raman scattering (SERS) is an ultrasensitive analytic technique. However, the application of SERS in quantitative analysis usually suffers from poor reliability due to the limitations of currently developed SERS substrates. In the present work, aggregated gold nanoparticles (a-AuNPs) fabricated by Ca2+-mediated assembly are dispersed in polyvinyl alcohol solution to prepare a novel hydrogel SERS chip through a physical crosslinking method. Taking advantage of the uniform distribution of SERS active a-AuNPs in the three-dimension hydrogel and the excellent barrier effect of hydrogel towards oxygen and macromolecules, the obtained hydrogel SERS chips show many outstanding advantages including high sensitivity, good repeatability, long-term stability, and a robust anti-interference ability. These advantages enable hydrogel SERS chips to be used to quantitatively analyse some complex samples without complex sample preprocessing. As a model, the hydrogel SERS chips are used for the detection of triazophos and phosmet in orange samples. The good recoveries suggest good applicability of the hydrogel SERS chips in food safety detection. This work provides a reliable and convenient platform for the quick detection and on-site monitoring of chemical contaminants and would promote greatly the performance of SERS techniques in quantitative analysis.


Assuntos
Nanopartículas Metálicas , Praguicidas , Ouro/química , Hidrogéis , Nanopartículas Metálicas/química , Compostos Organofosforados , Praguicidas/análise , Reprodutibilidade dos Testes , Análise Espectral Raman/métodos
10.
Angew Chem Int Ed Engl ; 61(7): e202112237, 2022 02 07.
Artigo em Inglês | MEDLINE | ID: mdl-34882312

RESUMO

Delays in evaluating cancer response to radiotherapy (RT) usually reduce therapy effect or miss the right time for treatment optimization. Hence, exploring timely and accurate methods enabling one to gain insights of RT response are highly desirable. In this study, we have developed an apoptosis enzyme (caspase-3) activated nanoprobe for early evaluation of RT efficacy. The nanoprobe bridged the nanogapped gold nanoparticles (AuNNPs) and the second near-infrared window (NIR-II) fluorescent (FL) molecules (IR-1048) through a caspase-3 specific peptide sequence (DEVD) (AuNNP@DEVD-IR1048). After X-ray irradiation, caspase-3 was activated to cut DEVD, turning on both NIR-II FL and PA imaging signals. The increased NIR-II FL/PA signals exhibited a positive correlation with the content of caspase-3. Moreover, the amount of the activated caspase-3 was negatively correlated with the tumor size. The results underscore the role of the caspase-3 activated by X-ray irradiation in bridging the imaging signals variation and tumor inhibition rate. Overall, activatable NIR-II FL/PA imaging was successfully used to timely predict and evaluate the RT efficacy. The evaluation system based on biomarker-triggered living imaging has the capacity to guide treatment decisions for numerous cancer types.


Assuntos
Caspase 3/química , Nanocompostos/química , Neoplasias/radioterapia , Caspase 3/metabolismo , Humanos , Neoplasias/metabolismo , Raios X
11.
Anal Chem ; 93(28): 9744-9751, 2021 07 20.
Artigo em Inglês | MEDLINE | ID: mdl-34241995

RESUMO

Surface-enhanced Raman Scattering (SERS) is a sensitive and nondestructive technique that provides fingerprint structural information of molecules. Designing and constructing sensitive and stable SERS substrates is of great significance for the application of the technique. In this study, single-layer carbon-based dots (CDs) are used as capping agents to synthesize gold nanoparticles (AuNPs/CDs) and manganese dioxide nanosheets (MnO2/CDs), which are then hybridized through a simple cocentrifugation method. After the hybridization, the monodispersive AuNPs/CDs aggregate obviously into some clusters exhibiting strong SERS activity due to the electromagnetic "hot spots" effect, and the MnO2/CDs also show outstanding SERS activity due to the charge-transfer resonance effect. The obtained nanohybrids (MnO2/CDs/AuNPs) with robust chemical stability combine well with the electromagnetic enhancement of AuNPs/CDs and chemical enhancement of MnO2/CDs, leading to an ultrahigh enhancement factor of 3.9 × 108. Based on the novel SERS substrate, a sensitive and rapid sensing system for the detection of malachite green is developed, with a low detection limit of 1 × 10-9 M. This work provides a valuable model for designing and fabricating high-performance SERS substrates.


Assuntos
Ouro , Nanopartículas Metálicas , Carbono , Dióxido de Carbono , Manganês , Compostos de Manganês , Óxidos , Análise Espectral Raman
12.
Chemistry ; 27(42): 10925-10931, 2021 Jul 26.
Artigo em Inglês | MEDLINE | ID: mdl-33998071

RESUMO

The effects of defect states on the fluorescence (FL) and electrochemiluminescence (ECL) properties of graphite phase carbon nitride (g-CN) are systematically investigated for the first time. The g-CN nanosheets (CNNSs) obtained at different condensation temperatures are used as the study models. It can be found that all the CNNSs have two kinds of defect states, one is originated from the edge of CNNSs (labeled as CN-defect) and the other is attributed to the partially carbonization regions (labeled as C-defect). Both two kinds of defect states substantially affect the luminescent properties of CNNSs. Both the FL and ECL signals of CNNSs contain a band gap emission and two defect emissions. For the FL of CNNSs, decreasing the density of defect states can increase efficiently the FL quantum yield, while increasing the density of defect states can make the FL spectra red shift. For the ECL of CNNSs, increasing the density of CN-defect states and decreasing the density of C-defect states are greatly important to improve the ECL activity. This work provides a deep insight into the FL and ECL mechanisms of g-CN, and is of significance in tuning the FL and ECL properties of g-CN. Also, it will greatly promote the applications of CNNSs based on the FL and ECL properties.

13.
Nucleic Acids Res ; 47(12): e71, 2019 07 09.
Artigo em Inglês | MEDLINE | ID: mdl-30926988

RESUMO

Class-specific bioreceptors are highly desirable for recognizing structurally similar small molecules, but the generation of such affinity elements has proven challenging. We here develop a novel 'parallel-and-serial' selection strategy for isolating class-specific oligonucleotide-based receptors (aptamers) in vitro. This strategy first entails parallel selection to selectively enrich cross-reactive binding sequences, followed by serial selection that enriches aptamers binding to a designated target family. As a demonstration, we isolate a class-specific DNA aptamer against a family of designer drugs known as synthetic cathinones. The aptamer binds to 12 diverse synthetic cathinones with nanomolar affinity and does not respond to 11 structurally similar non-target compounds, some of which differ from the cathinone targets by a single atom. This is the first account of an aptamer exhibiting a combination of broad target cross-reactivity, high affinity and remarkable specificity. Leveraging the qualities of this aptamer, instantaneous colorimetric detection of synthetic cathinones at nanomolar concentrations in biological samples is achieved. Our findings significantly expand the binding capabilities of aptamers as class-specific bioreceptors and further demonstrate the power of rationally designed selection strategies for isolating customized aptamers with desired binding profiles. We believe that our aptamer isolation approach can be broadly applied to isolate class-specific aptamers for various small molecule families.


Assuntos
Aptâmeros de Nucleotídeos , Técnica de Seleção de Aptâmeros/métodos , Alcaloides/química , Aptâmeros de Nucleotídeos/química , Aptâmeros de Nucleotídeos/isolamento & purificação , Aptâmeros de Nucleotídeos/metabolismo , Sequenciamento de Nucleotídeos em Larga Escala , Análise de Sequência de DNA
14.
Anal Chem ; 92(1): 1534-1540, 2020 01 07.
Artigo em Inglês | MEDLINE | ID: mdl-31790576

RESUMO

Many studies have demonstrated that the extracellular domain of human epidermal growth factor receptor 2 (HER2 ECD) level in serum can act as a breast cancer biomarker and serve as a monitoring neoadjuvant therapy of breast cancer. In this study, we developed a sensitive ascorbic acid (AA)-mediated AuNBPs (gold nanobipyramids) growth method with NADH (reduced nicotinamide adenine dinucleotide I) assistance, and we further fabricated a high-resolution multicolor immunosensor for sensitive visual detection of HER2 ECD in serum by using AuNBPs as signal and antibody as recognition probe. The NADH-assisted AA-mediated method effectively suppressed color formation in the blank and greatly improved the sensitivity of mediating AuNBPs growth, allowing us to use a low concentration of AA to mediate AuNBPs growth to generate more colorful and clearer color changes. The proposed multicolor immunosensor has higher resolution and more color changes corresponding to HER2 ECD concentrations. It can be used to detect as low as 0.5 ng/mL of HER2 ECD by bare eye observation and 0.05 ng/mL of HER2 ECD by UV-visible spectrophotometry. Using the immunosensor, we have successfully detected HER2 ECD in human serum with a recovery of 94%-96% and an RSD (n = 5) < 5%. The results obtained with our immunosensor were consistent with those obtained with ELISA, verifying the immunosensor has good accuracy. The immunosensor exhibited a vivid multicolor change, has low visual detection limit, excellent specificity and reproducibility, and robust resistance to matrix. All the above features makes our immunosensor a promising assay for the early diagnosis of HER2-dependent breast cancers in clinical diagnosis.


Assuntos
Biomarcadores Tumorais/sangue , Técnicas Biossensoriais , Neoplasias da Mama/sangue , Corantes Fluorescentes/química , Imunoensaio , Receptor ErbB-2/sangue , Ácido Ascórbico/química , Corantes Fluorescentes/síntese química , Ouro/química , Humanos , Nanopartículas Metálicas/química , Estrutura Molecular , NAD/química , Tamanho da Partícula , Propriedades de Superfície
15.
Nucleic Acids Res ; 46(13): e81, 2018 07 27.
Artigo em Inglês | MEDLINE | ID: mdl-29718419

RESUMO

We report a broadly applicable enzyme digestion strategy for introducing structure-switching functionality into small-molecule-binding aptamers. This procedure is based on our discovery that exonuclease III (Exo III) digestion of aptamers is greatly inhibited by target binding. As a demonstration, we perform Exo III digestion of a pre-folded three-way-junction (TWJ)-structured cocaine-binding aptamer and a stem-loop-structured ATP-binding aptamer. In the absence of target, Exo III catalyzes 3'-to-5' digestion of both aptamers to form short, single-stranded products. Upon addition of target, Exo III digestion is halted four bases prior to the target-binding domain, forming a major target-bound aptamer digestion product. We demonstrated that target-binding is crucial for Exo III inhibition. We then determine that the resulting digestion products of both aptamers exhibit a target-induced structure-switching functionality that is absent in the parent aptamer, while still retaining high target-binding affinity. We confirm that these truncated aptamers have this functionality by using an exonuclease I-based digestion assay and further evaluate this characteristic in an electrochemical aptamer-based cocaine sensor and a fluorophore-quencher ATP assay. We believe our Exo III-digestion method should be applicable for the generation of structure-switching aptamers from other TWJ- or stem-loop-containing small-molecule-binding aptamers, greatly simplifying the generation of functionalized sensor elements for folding-based aptasensors.


Assuntos
Aptâmeros de Nucleotídeos/química , Exodesoxirribonucleases , Trifosfato de Adenosina/análise , Cocaína/análise , Mutação , Espectrometria de Fluorescência
16.
Ecotoxicol Environ Saf ; 206: 111229, 2020 Dec 15.
Artigo em Inglês | MEDLINE | ID: mdl-32889310

RESUMO

Arsenite is the predominant arsenic species in flooded paddy soil, and arsenite bioaccumulation in rice grains has been identified as a major problem in many Asian countries. Lowering arsenite level in rice plants and grain via accelerating arsenite oxidation is a potential strategy to help populations, who depended on rice consumption, to reduce the internal exposure level of arsenic. We herein isolated a strain, Achromobacter xylosoxidans GD03, with the high arsenite-oxidizing ability and plant growth-promoting traits. We observed that arsenite exposure could promote A. xylosoxidans GD03 to excrete indole-3-acetic acid and thus promoted rice growth. The pot culture experiments of Indica rice cultivar Guang You Ming 118 (GYM118) demonstrated that A. xylosoxidans GD03 inoculation of paddy soil (4.5-180 × 108 CFU GD03/kg soil) significantly accelerated arsenite oxidation in flooded soil. The daily arsenic oxidation rate with GD03 inoculation was 1.5-3.3 times as that without strain GD03 inoculation within the whole growth period of Indica GYM118 in the presence of the native microflora. It thus led to a 34-69%, 43-74%, 24-76% and 35-57% decrease in arsenite concentration of the stems, leaves, bran and grain of Indica GYM118 respectively and a 59-96% increase in rice grain yield. The paddy soil inoculated with 40.0 mL/kg of A. xylosoxidans GD03 resulted in a lowest As(III) concentrations in all rice organs of Indica GYM118, which equivalent to only 24-50% of the As(III) concentrations in the group without GD03 inoculation. The results highlight that a highly arsenite-oxidizing bacterium could accelerate arsenite oxidation of paddy soil when facing competition with the native microflora, thus decrease arsenic toxicity and bioavailable soil arsenic.


Assuntos
Achromobacter denitrificans/crescimento & desenvolvimento , Arsenitos/metabolismo , Bioacumulação , Grão Comestível/crescimento & desenvolvimento , Oryza/crescimento & desenvolvimento , Poluentes do Solo/metabolismo , Achromobacter denitrificans/metabolismo , Arsenitos/análise , Ásia , Biomassa , Grão Comestível/metabolismo , Inundações , Oryza/metabolismo , Oryza/microbiologia , Oxirredução , Solo/química , Poluentes do Solo/análise
17.
Anal Chem ; 91(1): 1171-1177, 2019 01 02.
Artigo em Inglês | MEDLINE | ID: mdl-30501169

RESUMO

The high-throughput and rapid screening of cancer cells in blood is one of the most effective ways to realize clinical early diagnosis of cancer. We herein developed an inductively coupled plasma mass-spectrometry (ICP-MS)-based method for simultaneously counting two cancer cells, human hepatocellular carcinoma cell (SMMC-7721) and human lung carcinoma cell (A549), with high sensitivity and specificity. The method employed a magnetic-beads (MBs)-based dual aptamers-dual metal nanoparticles labeling technique for simultaneously recognizing and labeling different metal nanoparticles (AuNPs and AgNPs) on SMMC-7721 and A549 cancer cells, respectively, to generate ICP-MS signals, and a DNA hybridization chain reaction strategy for realizing "one SMMC-7721 cell-to-massive AuNPs" and "one A549 cell-to-massive AgNPs" amplification effect to improve sensitivity. The employment of ICP-MS detection and MBs not only simplified the experimental operation but also greatly enhanced the resistance of the method to the complicated matrix. The method can be used to simultaneously detect as few as 50 SMMC-7721 and A549 cancer cells in serum within 1 h with a recovery of 93-108% and a relative standard deviation (RSD, n = 5) < 5%. The method has notable advantages such as high sensitivity, excellent stability, high throughput, shorter analysis time, and strong resistibility to the complex matrix. Especially, the method can also be used to detect various cancer cells via altering aptamers and designing appropriate link/signal probes according to the target cells. The success of this study offers a potential approach for the high-throughput and rapid screening of cancer cells in clinical early diagnosis of cancer.


Assuntos
Neoplasias Hepáticas/diagnóstico , Neoplasias Pulmonares/diagnóstico , Nanopartículas Metálicas/química , Hibridização de Ácido Nucleico , Células A549 , Linhagem Celular Tumoral , Ensaios de Triagem em Larga Escala , Humanos , Campos Magnéticos , Espectrometria de Massas
18.
Anal Chem ; 91(13): 8280-8288, 2019 07 02.
Artigo em Inglês | MEDLINE | ID: mdl-31199622

RESUMO

Surface-enhanced Raman spectroscopy (SERS), as a nondestructive and fast detection technique, is a promising alternative approach for arsenic detection, particularly for in situ applications. SERS-based speciation analysis according to the fingerprint SERS signals of different arsenicals has the potential to provide a superior technique in species preservation over the conventional chromatographic separation methods, albeit with some difficulties due to the similarity in SERS patterns. In this study, we explored a novel SERS method for arsenic speciation by using the separation potential of the coffee ring effect on negatively charged silver nanofilms (AgNFs). Four arsenic species, including arsenite (AsIII), arsenate (AsV), monomethylarsonic acid (MMAV), and dimethylarsinic acid (DMAV), were measured for fingerprint SERS signals in solution and on the films. Significant enhancement of SERS signals on the dried coffee ring stains by the AgNFs were observed except for AsIII, and more importantly, arsenicals migrated varying distances during coffee ring development, promoting better speciation. Sodium dodecyl sulfate was then introduced into the droplet to reduce the droplet surface tension, facilitating the migration of solution into the peripheral region. Under the combined interactions of arsenicals with the AgNFs, solvent, and surfactant, enhanced separation between arsenicals was observed as a result of the formation of two concentric rings. Combining the SERS fingerprint signals and physical separation of arsenicals on the surface, arsenic speciation was achieved using the AgNFs substrate-based SERS technology, demonstrating the potential of the coffee ring effect for rapid separation and analysis of small molecules by SERS.


Assuntos
Arsênio/análise , Nanopartículas Metálicas/química , Arsênio/química , Arsenicais/análise , Arsenicais/isolamento & purificação , Prata , Análise Espectral Raman/métodos
19.
J Nanosci Nanotechnol ; 19(7): 4220-4227, 2019 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-30764996

RESUMO

Boron- and phenyl-doped graphitic carbon nitride nanosheets (BPCN NSs) were prepared by thermal polymerization of cyanamide with 3-aminobenzeneboronic acid followed by ultrasonic exfoliation. BPCN NSs exhibited enhanced peroxidase-like activity and catalyzed the oxidation of 3,3',5,5'-tetramethylbenzidine (TMB), 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) and o-phenylenediamine by H2O2. A simple sensitive colorimetric senor was developed for H2O2 by utilizing TMB as the substrate and BPCN NSs as enzyme mimetic. The linear relations between the absorbance and H2O2 concentration over the range from 0 to 280 µmol L-1 and from 280 to 1000 µmol L-1 were obtained with the limit of detection of 1.0 µmol L-1 according to the 3σ rule. The colorimetric sensor was applied for the detection of H2O2 residue in simulated soaked foods with satisfied results. Finally, the portable test kits for H2O2 were prepared and applied for the semi-quantitative assay of H2O2 residues in soaked chicken feet.

20.
J Am Chem Soc ; 140(31): 9961-9971, 2018 08 08.
Artigo em Inglês | MEDLINE | ID: mdl-30011200

RESUMO

The binding of small molecules to double-stranded DNA can modulate its susceptibility to digestion by exonucleases. Here, we show that the digestion of aptamers by exonuclease III can likewise be inhibited upon binding of small-molecule targets and exploit this finding for the first time to achieve sensitive, label-free small-molecule detection. This approach does not require any sequence engineering and employs prefolded aptamers which have higher target-binding affinities than structure-switching aptamers widely used in current small-molecule detecting assays. We first use a dehydroisoandrosterone-3-sulfate-binding aptamer to show that target binding halts exonuclease III digestion four bases prior to the binding site. This leaves behind a double-stranded product that retains strong target affinity, whereas digestion of nontarget-bound aptamer produces a single-stranded product incapable of target binding. Exonuclease I efficiently eliminates these single-stranded products but is unable to digest the target-bound double-stranded product. The remaining products can be fluorescently quantified with SYBR Gold to determine target concentrations. We demonstrate that this dual-exonuclease-mediated approach can be broadly applied to other aptamers with differing secondary structures to achieve sensitive detection of various targets, even in biological matrices. Importantly, each aptamer digestion product has a unique sequence, enabling the creation of multiplex assays, and we successfully demonstrate simultaneous detection of cocaine and ATP in a single microliter volume sample in 25 min via sequence-specific molecular beacons. Due to the generality and simplicity of this assay, we believe that different DNA signal-reporting or amplification strategies can be adopted into our assay for target detection in diverse analytical contexts.


Assuntos
Aptâmeros de Nucleotídeos/química , Exodesoxirribonucleases/química , Calorimetria/métodos , Cocaína/química , DNA/química , Corantes Fluorescentes/química
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