Detalhe da pesquisa
1.
COMO: a pipeline for multi-omics data integration in metabolic modeling and drug discovery.
Brief Bioinform
; 24(6)2023 09 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-37930022
2.
Addressing barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology.
Brief Bioinform
; 23(4)2022 07 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-35671510
3.
Essential role of systemic iron mobilization and redistribution for adaptive thermogenesis through HIF2-α/hepcidin axis.
Proc Natl Acad Sci U S A
; 118(40)2021 10 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34593646
4.
A practical guide to mechanistic systems modeling in biology using a logic-based approach.
Brief Bioinform
; 22(4)2021 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33064138
5.
Setting the basis of best practices and standards for curation and annotation of logical models in biology-highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.
Brief Bioinform
; 22(2): 1848-1859, 2021 03 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-32313939
6.
SysMod: the ISCB community for data-driven computational modelling and multi-scale analysis of biological systems.
Bioinformatics
; 37(21): 3702-3706, 2021 11 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-34179955
7.
A multi-approach and multi-scale platform to model CD4+ T cells responding to infections.
PLoS Comput Biol
; 17(8): e1009209, 2021 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34343169
8.
Recent applications of quantitative systems pharmacology and machine learning models across diseases.
J Pharmacokinet Pharmacodyn
; 49(1): 19-37, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-34671863
9.
Two heads are better than one: current landscape of integrating QSP and machine learning : An ISoP QSP SIG white paper by the working group on the integration of quantitative systems pharmacology and machine learning.
J Pharmacokinet Pharmacodyn
; 49(1): 5-18, 2022 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-35103884
10.
Automated inference of Boolean models from molecular interaction maps using CaSQ.
Bioinformatics
; 36(16): 4473-4482, 2020 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32403123
11.
ccNetViz: a WebGL-based JavaScript library for visualization of large networks.
Bioinformatics
; 36(16): 4527-4529, 2020 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-32516383
12.
SBML Level 3: an extensible format for the exchange and reuse of biological models.
Mol Syst Biol
; 16(8): e9110, 2020 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-32845085
13.
Combined TLR4 and TLR9 agonists induce distinct phenotypic changes in innate immunity in vitro and in vivo.
Cell Immunol
; 355: 104149, 2020 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-32619809
14.
Changes in lipid profiles of epileptic mouse model.
Metabolomics
; 16(10): 106, 2020 10 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-33021695
15.
Cooperative development of logical modelling standards and tools with CoLoMoTo.
Bioinformatics
; 31(7): 1154-9, 2015 Apr 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-25619997
16.
Integrating interactive computational modeling in biology curricula.
PLoS Comput Biol
; 11(3): e1004131, 2015 Mar.
Artigo
em Inglês
| MEDLINE | ID: mdl-25790483
17.
Augusta: From RNA-Seq to gene regulatory networks and Boolean models.
Comput Struct Biotechnol J
; 23: 783-790, 2024 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-38312198
18.
The simulation experiment description markup language (SED-ML): language specification for level 1 version 5.
J Integr Bioinform
; 2024 Apr 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-38613325
19.
Forum on immune digital twins: a meeting report.
NPJ Syst Biol Appl
; 10(1): 19, 2024 Feb 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-38365857
20.
Toward mechanistic medical digital twins: some use cases in immunology.
Front Digit Health
; 6: 1349595, 2024.
Artigo
em Inglês
| MEDLINE | ID: mdl-38515550