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1.
Phys Chem Chem Phys ; 23(15): 9512-9523, 2021 Apr 22.
Artigo em Inglês | MEDLINE | ID: mdl-33885062

RESUMO

Cesium and iodine, which are formed during a fission process in a nuclear reactor, are considered as major fission products responsible for the environmental burden in case of a nuclear accident. From the safety point of view, it is thus important to understand their release mechanism when overheating of the reactor core occurs. This work presents an experimental investigation of the behaviour of caesium iodide and caesium fluoride in fluoride based molten salt reactor fuel during high temperature events. It has been demonstrated that CsF will be retained in the fuel salt and thus its volatility will be significantly reduced, while CsI will not dissolve in the fluoride-based fuel matrix and will thus remain more volatile. The influence of the presence of CsI and CsF on the melting behaviour of the fuel has been investigated using calorimetry, revealing their negligible effects.

2.
Phys Chem Chem Phys ; 23(18): 11091-11103, 2021 May 14.
Artigo em Inglês | MEDLINE | ID: mdl-33949518

RESUMO

The short-range structures of LiF-ThF4, NaF-AnF4, KF-AnF4, and Cs-AnF4 (An = Th, U), were probed using in situ high temperature Extended X-ray Absorption Fine Structure (EXAFS) spectroscopy. Signally, the EXAFS spectra of pure molten ThF4 and UF4 were measured for the first time. The data were interpreted with the aid of Molecular Dynamics (MD) and standard fitting of the EXAFS equation. As in related studies, a speciation distribution dominated by [AnFx]4-x (x = 7, 8, 9) coordination complexes was observed. The average coordination number was found to decrease with the increasing size of the alkali cation, and increase with AnF4 content. An average coordination number close to 6, which had not been detected before in melts of alkali actinide fluorides, was seen when CsF was used as solvent.

3.
Tijdschr Psychiatr ; 60(7): 449-453, 2018.
Artigo em Holandês | MEDLINE | ID: mdl-30019739

RESUMO

BACKGROUND: During their specialty training program residents are stimulated to think and work in a goal-oriented way. Patient 'no shows' are quite common in the mental healthcare system, consequently causing the ineffective use of healthcare services.
AIM: To reduce the amount of 'no shows' in an outpatient clinic for hospital psychiatry by sending reminders via text messaging.
METHOD: A quasi-experimental study was conducted at an outpatient clinic for hospital-psychiatry in 2016, in which 101 patients were included. Eventually, 50 patients received a text message to remind them of their appointment, while 46 did not. We used a χ2 test to evaluate group differences. The effect size was expressed in the 'number needed to cash' (nnc), similar to the number needed to treat (nnt). Routinely available hospital-data was used to estimate lost revenue per year.
RESULTS: A significant group difference was found in the number of outpatient clinic visits in favour of sending a text message reminder (74% vs. 92%, p = 0.018). This corresponded to a nnc of 5.53, i.e. 6 text messages need to be sent in order to accomplish one extra patient showing up for their intake. Based on hospital-data from 2016 the estimated lost revenue was € 53.017,38 / year at our outpatient clinic.
CONCLUSION: Sending reminders via text messaging is effective in reducing the number of 'no shows' at an outpatient clinic for hospital psychiatry.


Assuntos
Pacientes Ambulatoriais/psicologia , Cooperação do Paciente , Envio de Mensagens de Texto , Agendamento de Consultas , Hospitais Psiquiátricos , Humanos , Países Baixos , Pacientes Ambulatoriais/estatística & dados numéricos
4.
Inorg Chem ; 53(1): 375-82, 2014 Jan 06.
Artigo em Inglês | MEDLINE | ID: mdl-24350659

RESUMO

The valence state of uranium has been confirmed for the three sodium uranates NaU(V)O3/[Rn](5f(1)), Na4U(VI)O5/[Rn](5f(0)), and Na2U(VI)2O7/[Rn](5f(0)), using X-ray absorption near-edge structure (XANES) spectroscopy. Solid-state (23)Na magic angle spinning nuclear magnetic resonance (MAS NMR) measurements have been performed for the first time, yielding chemical shifts at -29.1 (NaUO3), 15.1 (Na4UO5), and -14.1 and -19 ppm (Na1 8-fold coordinated and Na2 7-fold coordinated in Na2U2O7), respectively. The [Rn]5f(1) electronic structure of uranium in NaUO3 causes a paramagnetic shift in comparison to Na4UO5 and Na2U2O7, where the electronic structure is [Rn]5f(0). A (23)Na multi quantum magic angle spinning (MQMAS) study on Na2U2O7 has confirmed a monoclinic rather than rhombohedral structure with evidence for two distinct Na sites. DFT calculations of the NMR parameters on the nonmagnetic compounds Na4UO5 and Na2U2O7 have permitted the differentiation between the two Na sites of the Na2U2O7 structure. The linear thermal expansion coefficients of all three compounds have been determined using high-temperature X-ray diffraction: αa = 22.7 × 10(-6) K(-1), αb = 12.9 × 10(-6) K(-1), αc = 16.2 × 10(-6) K(-1), and αvol = 52.8 × 10(-6) K(-1) for NaUO3 in the range 298-1273 K; αa = 37.1 × 10(-6) K(-1), αc = 6.2 × 10(-6) K(-1), and αvol = 81.8 × 10(-6) K(-1) for Na4UO5 in the range 298-1073 K; αa = 6.7 × 10(-6) K(-1), αb = 14.4 × 10(-6) K(-1), αc = 26.8 × 10(-6) K(-1), αß = -7.8 × 10(-6) K(-1), and αvol = -217.6 × 10(-6) K(-1) for Na2U2O7 in the range 298-573 K. The α to ß phase transition reported for the last compound above about 600 K was not observed in the present studies, either by high-temperature X-ray diffraction or by differential scanning calorimetry.

5.
Inorg Chem ; 52(5): 2404-11, 2013 Mar 04.
Artigo em Inglês | MEDLINE | ID: mdl-23421448

RESUMO

Using drop calorimetry, we measured enthalpy increments of the LiF-KF, LiF-RbF, and LiF-CsF binary systems at temperatures above the melting point. Ten samples with different compositions (four compositions for LiF-KF, one composition for LiF-RbF, and five compositions for LiF-CsF) were prepared and measured between 884 K and 1382 K. To protect the calorimeter from corrosive fluoride vapor at high temperature, an encapsulating technique developed for this purpose was used. The samples were filled in nickel containers that were sealed by laser welding and afterward used for the measurements. From the obtained results, we derived the molar heat capacity functions of the respective samples. The heat capacities of the samples, having different compositions of the same binary system, were compared with the values for ideal behavior and the excess heat capacity function was determined for the entire composition range of the liquid solution. It was found that the excess heat capacities clearly depend on the cation radius and increase in the following order: LiF-NaF < LiF-KF < LiF-RbF < LiF-CsF.

6.
Inorg Chem ; 50(20): 10102-6, 2011 Oct 17.
Artigo em Inglês | MEDLINE | ID: mdl-21913692

RESUMO

The low temperature heat capacity of UF(3) has been measured using an adiabatic low temperature calorimeter in the temperature range from 10 to 350 K. These data are complemented at the lowest temperature region with data obtained with a Quantum Design PPMS-14 device in the temperature range from 0.5 to 20 K. Good agreement between both techniques has been found, and from these experimental results the absolute entropy of UF(3) at 298.15 K has been determined as 126.8 ± 2.5 J K(-1) mol(-1). On the basis of the specific heat data and the magnetization measurements performed on a SQUID device, a transition at 1.59 K attributed to Curie temperature of a ferromagnetic transition has been found in this study. This observation makes UF(3) a unique compound with an unusually low ferromagnetic ordering temperature.

7.
J Chem Phys ; 130(13): 134716, 2009 Apr 07.
Artigo em Inglês | MEDLINE | ID: mdl-19355773

RESUMO

A multiscale modeling approach is developed to compute the phase diagram of the RbF-CsF binary system. The mixing enthalpies of the (Rb,Cs)F solid and liquid solutions are evaluated using density functional theory and classical molecular dynamics calculations, respectively. For the solid solution, 18 different configurations are studied with density functional theory and the surrounded atom model is applied in order to compute the configurational partition function. We also measure the solidus and liquidus equilibria using differential scanning calorimetry. Finally the RbF-CsF phase diagram is constructed using the calculated excess free enthalpies of the solid and liquid solutions and a very good agreement with our experimental data is found.

8.
Sci Rep ; 8(1): 5038, 2018 Mar 22.
Artigo em Inglês | MEDLINE | ID: mdl-29567942

RESUMO

Values are presented for thermal conductivity, specific heat, spectral and total hemispherical emissivity of ThO2 (a potential nuclear fuel material) in a temperature range representative of a nuclear accident - 2000 K to 3050 K. For the first time direct measurements of thermal conductivity have been carried out on ThO2 at such high temperatures, clearly showing the property does not decrease above 2000 K. This could be understood in terms of an electronic contribution (arising from defect induced donor/acceptor states) compensating the degradation of lattice thermal conductivity. The increase in total hemispherical emissivity and visible/near-infrared spectral emissivity is consistent with the formation of donor/acceptor states in the band gap of ThO2. The electronic population of these defect states increases with temperature and hence more incoming photons (in the visible and near-infrared wavelength range) can be absorbed. A solid state physics model is used to interpret the experimental results. Specific heat and thermal expansion coefficient increase at high temperatures due to the formation of defects, in particular oxygen Frenkel pairs. Prior to melting a gradual increase to a maximum value is predicted in both properties. These maxima mark the onset of saturation of oxygen interstitial sites.

9.
Mol Cell Biol ; 19(2): 967-78, 1999 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-9891033

RESUMO

Transmission of malaria depends on the successful development of the sexual stages of the parasite within the midgut of the mosquito vector. The differentiation process leading to the production of the sexual stages is delineated by several developmental switches. Arresting the progression through this sexual differentiation pathway would effectively block the spread of the disease. The successful development of such transmission-blocking agents is hampered by the lack of a detailed understanding of the program of gene expression that governs sexual differentiation of the parasite. Here we describe the isolation and functional characterization of the Plasmodium falciparum pfs16 and pfs25 promoters, whose activation marks the developmental switches executed during the sexual differentiation process. We have studied the differential activation of the pfs16 and pfs25 promoters during intraerythrocytic development by transfection of P. falciparum and during gametogenesis and early sporogonic development by transfection of the related malarial parasite P. gallinaceum. Our data indicate that the promoter of the pfs16 gene is activated at the onset of gametocytogenesis, while the activity of the pfs25 promoter is induced following the transition to the mosquito vector. Both promoters have unusual DNA compositions and are extremely A/T rich. We have identified the regions in the pfs16 and pfs25 promoters that are essential for high transcriptional activity. Furthermore, we have identified a DNA-binding protein, termed PAF-1, which activates pfs25 transcription in the mosquito midgut. The data presented here shed the first light on the details of processes of gene regulation in the important human pathogen P. falciparum.


Assuntos
DNA de Protozoário/genética , DNA de Protozoário/isolamento & purificação , Plasmodium falciparum/crescimento & desenvolvimento , Plasmodium falciparum/genética , Regiões Promotoras Genéticas , Animais , Sequência de Bases , Sítios de Ligação/genética , Mapeamento Cromossômico , Culicidae/parasitologia , Primers do DNA/genética , DNA de Protozoário/metabolismo , Feminino , Regulação da Expressão Gênica no Desenvolvimento , Genes de Protozoários , Humanos , Insetos Vetores/parasitologia , Malária Falciparum/parasitologia , Malária Falciparum/transmissão , Masculino , Dados de Sequência Molecular , Plasmodium falciparum/patogenicidade , Diferenciação Sexual/genética , Fatores de Transcrição/metabolismo , Transfecção
10.
Dalton Trans ; 46(35): 11626-11635, 2017 Sep 12.
Artigo em Inglês | MEDLINE | ID: mdl-28832053

RESUMO

A new double neptunium zirconium phosphate of the type MxZr2(PO4)3 (M = Np), crystallizing in the structure type NaZr2(PO4)3 (NZP, NASICON), was synthesized by solid state reactions at high temperatures and characterized by X-ray diffraction, infrared spectroscopy and Mössbauer spectroscopy. The Rietveld refinement of the XRD pattern together with the analysis of the IR spectra of the sample confirmed the space group P3[combining macron]c, the same as that for the lanthanide analogues Ln0.33Zr2(PO4)3. However, Mössbauer studies revealed the presence of neptunium in the two oxidation states +3 and +4, indicating a two-phase NZP system with different crystallographic environments of the neptunium atoms. The thermal behaviour of the sample was followed up to 1400 °C by thermogravimetric analysis.

11.
Biochim Biophys Acta ; 1089(2): 183-92, 1991 Jun 13.
Artigo em Inglês | MEDLINE | ID: mdl-1905158

RESUMO

With the aid of a binary plasmid in vivo testsystem it was demonstrated that the single-stranded DNA binding protein encoded by gene V of bacteriophage M13 not only regulates the synthesis of its cognate DNA replication proteins at the level of translation, but also of the assembly proteins and the coat proteins encoded by genes I and II, respectively. Furthermore, gene V protein functions as a translational autoregulator of its own synthesis. Comparison of the mRNA levels of genes I and X in the presence and absence of wild-type gene V protein indicated that gene V protein augments the physical stability of these mRNAs. The expression of the Escherichia coli beta-galactosidase gene and of a gene X mutant containing a deletion in the nontranslated mRNA leader sequence was not influenced by gene V protein, lending support to the conclusion that gene V protein exerts its regulatory effect via a specific nucleotide sequence in the leader sequences of the respective M13 mRNAs. We conclude that gene V protein functions as a master regulatory protein of the expression and replication of the M13 genome.


Assuntos
Bacteriófagos/genética , Genes Virais , Biossíntese de Proteínas , RNA Mensageiro/genética , Proteínas Virais/genética , Autorradiografia , Sequência de Bases , Western Blotting , Proteínas de Ligação a DNA/genética , Eletroforese em Gel de Poliacrilamida , Escherichia coli/enzimologia , Regulação Viral da Expressão Gênica , Dados de Sequência Molecular , Mutação , Plasmídeos , RNA Viral/genética , Homologia de Sequência do Ácido Nucleico , Proteínas Virais/biossíntese , beta-Galactosidase/genética
12.
Biochim Biophys Acta ; 521(1): 27-44, 1978 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-363158

RESUMO

It is demonstrated that after infection of the appropriate minicell-producing strain of Escherichia coli with the filamentous bacteriophage M13, its replicative form DNA is segregated into minicells. Consequently these minicells have acquired the capability to direct the synthesis of phage-specific RNA and protein. Comparision of the electrophoretic mobilities of phage-specific RNA species made in vitro with those made in M13 replicative form DNA harbouring minicells, have indicated that almost all in vitro synthesized G-start RNAs have an equivalent among the in vivo synthesized RNA products. Furthermore it could be demonstrated that in M13 replicative form DNA harbouring minicells the phage-specific proteins encoded by genes III, IV, V and VIII are made. In addition the synthesis of a phage-specific polypeptide (molecular weight approx. 3000) co-migrating with the recently discovered capsid protein (designated C-protein) could be demonstrated. The meaning of these results for the resolution of the regulatory mechanisms operative during the life cycle of this phage will be discussed.


Assuntos
Colífagos/metabolismo , Escherichia coli/metabolismo , RNA Viral/biossíntese , Proteínas Virais/biossíntese , Proteínas de Bactérias/biossíntese , Cloranfenicol/farmacologia , Genótipo , Cinética , Peso Molecular , Hibridização de Ácido Nucleico , Biossíntese de Proteínas/efeitos dos fármacos , RNA Bacteriano/biossíntese , Rifampina/farmacologia , Especificidade da Espécie , Transcrição Gênica/efeitos dos fármacos
13.
Biochim Biophys Acta ; 1327(1): 5-16, 1997 Jul 05.
Artigo em Inglês | MEDLINE | ID: mdl-9247162

RESUMO

A mutant of bacteriophage M13 was prepared in which a cysteine residue was introduced at position 25 of the major coat protein. The mutant coat protein was spin-labeled with a nitroxide derivative of maleimide and incorporated at different lipid-to-protein (L/P) ratios in DOPC or DOPG. The rotational dynamics of the reconstituted mutant coat protein was studied using EPR and saturation transfer (ST) EPR techniques. The spectra are indicative for an anisotropic motion of the maleimide spin label with a high order parameter (S = 0.94). This is interpreted as a wobbling motion of the spin label with a correlation time of about 10(-6) to 10(-5) s within a cone, and a rotation of the spin label about its long molecular axis with a correlation time of about l0(-7) s. The wobbling motion is found to correspond generally to the overall rotational motion of a coat protein monomer about the normal to the bilayer. This motion is found to be sensitive to the temperature and L/P ratio. The high value of the order parameter implies that the spin label experiences a strong squeezing effect by its local environment, that reduces the amplitude of the wobbling motion. This squeezing effect is suggested to arise from a turn structure in the coat protein from Gly23 to Glu20.


Assuntos
Proteínas do Capsídeo , Capsídeo/química , Bicamadas Lipídicas/química , Proteínas de Membrana/química , Fosfolipídeos/química , Capsídeo/genética , Espectroscopia de Ressonância de Spin Eletrônica , Proteínas de Membrana/genética , Modelos Moleculares , Mutação , Conformação Proteica , Marcadores de Spin
14.
J Mol Biol ; 169(1): 197-215, 1983 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-6312049

RESUMO

A DNA binding protein encoded by the filamentous single-stranded DNA phage IKe has been isolated from IKe-infected Escherichia coli cells. Fluorescence and in vitro binding studies have shown that the protein binds co-operatively and with a high specificity to single-stranded but not to double-stranded DNA. From titration of the protein to poly(dA) it has been calculated that approximately four bases of the DNA are covered by one monomer of protein. These binding characteristics closely resemble those of gene V protein encoded by the F-specific filamentous phages M13 and fd. The nucleotide sequence of the gene specifying the IKe DNA binding protein has been established. When compared to the nucleotide sequence of gene V of phage M13 it shows an homology of 58%, indicating that these two phages are evolutionarily related. The IKe DNA binding protein is 88 amino acids long which is one amino acid residue larger than the gene V protein sequence. When the IKe DNA binding protein sequence is compared with that of gene V protein it was found that 39 amino acid residues have identical positions in both proteins. The positions of all five tyrosine residues, a number of which are known to be involved in DNA binding, are conserved. Secondary structure predictions indicate that the two proteins contain similar structural domains. It is proposed that the tyrosine residues which are involved in DNA binding are the ones in or next to a beta-turn, at positions 26, 41 and 56 in gene V protein and at positions 27, 42 and 57 in the IKe DNA binding protein.


Assuntos
Colífagos/genética , Proteínas de Ligação a DNA/metabolismo , Genes Virais , Sequência de Aminoácidos , Aminoácidos/análise , Sequência de Bases , Colífagos/análise , Enzimas de Restrição do DNA , DNA Viral/metabolismo , Proteínas de Ligação a DNA/isolamento & purificação
15.
J Mol Biol ; 181(1): 27-39, 1985 Jan 05.
Artigo em Inglês | MEDLINE | ID: mdl-3981635

RESUMO

The nucleotide sequence and genetic organization of the genome of the N-specific filamentous single-stranded DNA phage IKe has been established and compared with that of the F-specific filamentous phages M13, fd and f1 (Ff). The IKe DNA sequence comprises 6883 nucleotides, which is 476 (475) nucleotides more than the nucleotide sequence of the Ff genome. The data indicate that IKe and Ff have evolved from a common ancestor (overall homology approx. 55%) and that their genomes contain ten homologous genes, the order of which is identical. Similar to Ff, the major coat protein and the gene III-encoded pilot protein of IKe are synthesized via precursor molecules. The extent of homology between the genes of IKe and Ff differs significantly from one gene to another. Genes that code for viral capsid proteins are less homologous than genes whose products are involved in the processes of DNA replication and phage morphogenesis. During evolution, large nucleotide sequence rearrangements have occurred in the gene (gene III) whose product is needed for the attachment of the virion to the conjugative pili of the host cell, suggesting that these rearrangements have led to phages with different host specificities. Extensive nucleotide sequence homology was noted between the structural elements involved in DNA replication and phage morphogenesis, indicating that the mechanisms involved in DNA replication and morphogenesis are highly conserved.


Assuntos
Colífagos/genética , DNA de Cadeia Simples/genética , DNA Viral/genética , Genes Virais , Sequência de Bases , Sítios de Ligação , Regulação da Expressão Gênica , Óperon , Biossíntese de Proteínas , RNA Ribossômico , Regiões Terminadoras Genéticas , Transcrição Gênica , Proteínas Virais
16.
J Mol Biol ; 206(1): 119-32, 1989 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-2704037

RESUMO

Two-dimensional nuclear magnetic resonance techniques were used to obtain residue- and sequence-specific assignments in the 1H spectrum of the single-stranded DNA-binding protein encoded by gene V of the filamentous phage IKe (IKe GVP). The residue-specific assignments are based on the analysis of J-correlated spectra, i.e. correlated spectroscopy and homonuclear-Hartmann-Hahn total correlated spectroscopy. Complete assignments of side-chain spin systems, e.g. long side-chains, were, to a major part, derived from two-dimensional spectra obtained by means of the latter technique. Sequence-specific residue assignments were obtained for the two neighbouring residues V41 and Y42, and the amino acid sequence segment encompassing residues S17 through I29. The structure of this segment, a beta-loop, was deduced from the interresidue nuclear Overhauser effect pattern. Residues S17 through V19 and P26 through I29 form an anti-parallel beta-ladder segment, whereas residues Q21 to K25 constitute the loop region. The beta-loop is expected to project into the solution and is intimately involved in binding to single-stranded DNA; it is therefore designated the "DNA-binding wing". By analogy with the structure of the DNA-binding wing deduced from IKe GVP, a similar structure is proposed for the corresponding domain of the gene V protein encoded by the filamentous phage Ff for which, from X-ray diffraction studies, a three-dimensional structure has been deduced. Essential differences appear to exist between the DNA-binding domain in the X-ray structure and that proposed in this paper. Possible reasons for these differences are discussed.


Assuntos
Bacteriófagos/metabolismo , DNA de Cadeia Simples , DNA Viral , Proteínas de Ligação a DNA , Genes Virais , Sequência de Aminoácidos , Aminoácidos , Fenômenos Químicos , Química , Espectroscopia de Ressonância Magnética , Dados de Sequência Molecular
17.
J Mol Biol ; 240(4): 341-57, 1994 Jul 22.
Artigo em Inglês | MEDLINE | ID: mdl-8035458

RESUMO

A contact analysis and a series of restrained molecular dynamics simulations were employed to derive a model of the complex between single-stranded DNA and the single-stranded DNA-binding protein encoded by gene V of the filamentous phage M13. The study is based on the recently elucidated solution structure of the Tyr41-->His mutant of the protein. Electron microscopy studies, indicating that the complex forms a flexible, left-handed helical coil with a diameter of 8 to 9 nm and an average pitch of 9 nm, were taken into consideration. The contact analysis served to determine the helix parameters that permit the energetically most favourable packing of protein molecules. Then a protein super-helix was built, into which two extended strands of DNA were modelled using restrained molecular dynamics. Specific constraints were included to ensure that the DNA would position itself into the binding groove of the protein. These constraints are based on recent NMR spin label experiments which offered a direct identification of the amino acids of the protein present in the DNA-binding domain. We present a model for the complex which is in full agreement with the existing reliable biophysical and biochemical data. A description of the protein-protein interface is given and the protein-DNA interaction is discussed in view of the derived model. In addition, we demonstrate that, on the basis of the available experimental data, and not imposing the left-handedness of the nucleoprotein complex, it is feasible to build also a plausible model for the complex which exhibits the opposite, i.e. right-handed, helical sense. This nucleoprotein structure features characteristics highly similar to those of the left-handed helix.


Assuntos
Bacteriófago M13 , DNA de Cadeia Simples/química , Proteínas de Ligação a DNA/química , Proteínas Virais/química , Bacteriófago M13/química , Bacteriófago M13/genética , Gráficos por Computador , Proteínas de Ligação a DNA/genética , Genes Virais , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Estereoisomerismo , Proteínas Virais/genética
18.
J Mol Biol ; 236(1): 229-46, 1994 Feb 11.
Artigo em Inglês | MEDLINE | ID: mdl-8107108

RESUMO

The solution structure of mutant Tyr41-->His of the single-stranded DNA binding protein encoded by gene V of the filamentous bacteriophage M13 has been investigated by nuclear magnetic resonance spectroscopy. Two- and three-dimensional NMR experiments have been employed with a variety of NMR samples of gene V protein, some of which were uniformly enriched with either 15N or 13C. The structure of mutant Tyr41-->His of the M13 gene V protein which occurs in solution as a symmetric dimer was calculated using a two-stage procedure. The first step of the procedure involved the calculation of a set of individual monomer structures using the distance geometry program DIANA. This was then followed by the calculation of dimer structures employing "simulated annealing" protocols with the program X-PLOR. Hereby, the problem of assignment of intra- and inter-subunit NOEs of the symmetric dimer was circumvented through use of a target function that correctly deals with the intra- and inter-subunit contributions to the NOE peaks. Furthermore, a pseudo energy term was employed to restrain the symmetry of the dimer. In addition to this novel calculation strategy, we have incorporated distance information for a set of NOEs which were unambiguously identified as inter-subunit NOEs using an NMR strategy based on asymmetric labelling. A total of 20 structures were calculated for the M13 gene V protein mutant Tyr41-->His based on approximately 1000 experimental restraints derived from the NMR data. The structure of residues 1 to 15 and 29 to 87 of both monomers is reasonably well determined with an average atomic r.m.s. difference between the individual structures and the respective mean structure of approximately 0.9 A for the backbone atoms and approximately 1.4 A for all atoms. The orientation of the exposed anti-parallel beta-loop (residues 16 to 28) with respect to the core could not be determined. The molecular architecture of each of the monomers includes a five-stranded beta-barrel enclosing a hydrophobic core and two-antiparallel beta-loops. The dimer structure is stabilized predominantly by hydrophobic residues primarily involving the symmetry-related dyad domains (residues 64 to 82) of the monomers. Residues which are close to bound single-stranded DNA were identified previously from binding experiments with spin-labelled oligonucleotides. The solution structure of mutant Tyr41-->His of the M13 gene V protein is consistent with these binding data and provides a clear view of the protein's single-stranded DNA binding path.


Assuntos
Bacteriófago M13/metabolismo , Proteínas de Ligação a DNA/química , Genes Virais , Histidina , Mutação Puntual , Conformação Proteica , Estrutura Secundária de Proteína , Tirosina , Sequência de Aminoácidos , Bacteriófago M13/genética , Sítios de Ligação , Calorimetria , Isótopos de Carbono , Clonagem Molecular , Gráficos por Computador , Proteínas de Ligação a DNA/biossíntese , Proteínas de Ligação a DNA/genética , Escherichia coli/metabolismo , Substâncias Macromoleculares , Espectroscopia de Ressonância Magnética/métodos , Modelos Moleculares , Dados de Sequência Molecular , Nitrogênio , Proteínas Recombinantes/biossíntese , Proteínas Recombinantes/química
19.
J Mol Biol ; 282(2): 401-19, 1998 Sep 18.
Artigo em Inglês | MEDLINE | ID: mdl-9735296

RESUMO

The three-dimensional structure of the major coat protein of bacteriophage M13, solubilized in detergent micelles, has been determined using heteronuclear multidimensional NMR and restrained molecular dynamics. The protein consists of two alpha-helices, running from residues 8 to 16 and 25 to 45, respectively. These two helices are connected by a flexible and distorted helical hinge region. The structural properties of the coat protein make it resemble a flail, in which the hydrophobic helix (residues 25 to 45) is the handle and the other, amphipathic, helix the swingle. In this metaphor, the hinge region is the connecting piece of leather. The mobility of the residues in the hinge region is likely to enable a smooth transformation from the membrane-bound form, mimicked by the structure in detergent micelles, into the structure in the mature phage. A specific distribution of the residues over the surface of the two helices was observed in the presented high-resolution structure of the membrane-bound form of the major coat protein as well as in the structure in the mature phage. All data suggest that this arrangement of residues is important for the interactions of the protein with the membrane, for correct protein-DNA and protein-protein interactions in the phage and for a proper growth of the phage during the assembly process. By combining our findings with earlier NMR results on the major coat protein in detergent micelles, we were able to construct a model that addresses the role of specific residues in the assembly process.


Assuntos
Bacteriófago M13/química , Bacteriófago M13/fisiologia , Proteínas do Capsídeo , Capsídeo/química , Proteínas de Membrana/química , Modelos Biológicos , Montagem de Vírus , Sequência de Aminoácidos , Capsídeo/fisiologia , Cristalografia por Raios X , Detergentes , Proteínas de Membrana/fisiologia , Micelas , Dados de Sequência Molecular , Ressonância Magnética Nuclear Biomolecular
20.
J Mol Biol ; 206(1): 133-52, 1989 Mar 05.
Artigo em Inglês | MEDLINE | ID: mdl-2704038

RESUMO

The DNA-binding domain of the single-stranded DNA-binding protein IKe GVP was studied by means of 1H nuclear magnetic resonance, through use of oligonucleotides of two and three adenyl residues in length, that were spin-labelled at their 3' and/or 5' termini. These spin-labelled ligands were found to cause line broadening of specific protein resonances when bound to the protein, although they were present in small quantities, i.e. of the order of 0.04 molar equivalent and less. The line broadening of protein resonances was made manifest by means of difference one and two-dimensional spectroscopy. Difference one-dimensional experiments revealed line broadening of the same protein resonances upon binding of either 3' or 5' spin-labelled oligonucleotides. Evidence in favour of the existence of a fixed 5' to 3' orientation in the binding of oligonucleotides to the protein surface was therefore not obtained from the spin-labelled oligonucleotide binding studies. Residue-specific assignments of broadened resonances could not, or could only sparsely, be derived from the difference one-dimensional spectra, because of the tremendous overlap in the aliphatic region of the spectrum. In contrast, such assignments were easily obtained from the difference two-dimensional spectra, which were recorded by means of both total correlated spectroscopy and nuclear Overhauser effect spectroscopy. Difference signals were detected for 15 spin systems; ten out of these were assigned to the residues I29, Y27, S20, G18, R16, T28, K22, Q21, V19 and S17 in the amino acid sequence of IKe GVP; the other five spin systems could be assigned to a phenylalanyl residue, an arginyl or lysyl residue, an aspartic acid or asparagyl residue, a glycyl residue and a glutamic acid or glutamyl residue. From the evaluation of the relative difference signals, it was concluded that the direct surroundings of the spin-label group of the labelled oligonucleotide in the bound state is composed of the first five residues in the former group of residues and the five residues in the latter group.(ABSTRACT TRUNCATED AT 400 WORDS)


Assuntos
Bacteriófagos/metabolismo , DNA de Cadeia Simples , DNA Viral , Proteínas de Ligação a DNA , Genes Virais , Sequência de Aminoácidos , Aminoácidos , Sítios de Ligação , Espectroscopia de Ressonância Magnética , Modelos Estruturais , Dados de Sequência Molecular , Oligonucleotídeos
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